Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1246600 Malus domestica HOM05D005274 ORTHO05D006485 1.3e-108 396.4 198 100.0
MD09G1264600 Malus domestica HOM05D005274 ORTHO05D006485 2.5e-91 339.0 191 90.6
MD08G1181300 Malus domestica HOM05D005274 ORTHO05D006485 1.3e-87 326.6 191 86.4
FAN27G1266 Fragaria x ananassa HOM05D005274 ORTHO05D006485 3.9e-76 288.5 188 75.5
FAN24G2993 Fragaria x ananassa HOM05D005274 ORTHO05D006485 8.7e-76 287.3 188 75.5
RcHm_v2.0_Chr6g0267991 Rosa chinensis HOM05D005274 ORTHO05D006485 1.1e-75 287.0 188 75.5
FvH4_2g10500 Fragaria vesca HOM05D005274 ORTHO05D006485 1.9e-75 286.2 188 75.0
FAN15G2064 Fragaria x ananassa HOM05D005274 ORTHO05D006485 3.3e-75 285.4 188 74.5
Prupe.5G024800 Prunus persica HOM05D005274 ORTHO05D006485 1.2e-69 266.9 194 69.1
PGSC0003DMG400005779 Solanum tuberosum HOM05D005274 ORTHO05D006485 2.7e-61 239.2 184 63.0
QL02p069234 Quercus lobata HOM05D005274 ORTHO05D006485 1.3e-60 236.9 185 64.9
Peaxi162Scf00102g01534 Petunia axillaris HOM05D005274 ORTHO05D006485 5.1e-60 235.0 184 62.5
CAN.G792.79 Capsicum annuum HOM05D005274 ORTHO05D006485 6.7e-60 234.6 184 63.0
Solyc08g008040.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 6.7e-60 234.6 184 61.4
Sopen08g003920 Solanum pennellii HOM05D005274 ORTHO05D006485 6.7e-60 234.6 184 61.4
GSVIVG01032972001 Vitis vinifera HOM05D005274 ORTHO05D006485 1.5e-59 233.4 196 60.7
Nitab4.5_0004836g0020 Nicotiana tabacum HOM05D005274 ORTHO05D006485 1.9e-59 233.0 184 63.0
Cc00_g24660 Coffea canephora HOM05D005274 ORTHO05D006485 7.4e-59 231.1 187 61.0
Cpa.g.sc70.54 Carica papaya HOM05D005274 ORTHO05D006485 2.8e-58 229.2 190 60.0
MSTRG.20092 Avicennia marina HOM05D005274 ORTHO05D006485 6.3e-58 228.0 196 57.7
Nitab4.5_0006090g0030 Nicotiana tabacum HOM05D005274 ORTHO05D006485 6.3e-58 228.0 189 61.4
Cfa007146 Carpinus fangiana HOM05D005274 ORTHO05D006485 2.4e-57 226.1 186 60.8
Cc06_g13990 Coffea canephora HOM05D005274 ORTHO05D006485 2.4e-57 226.1 187 60.4
Medtr2g097630 Medicago truncatula HOM05D005274 ORTHO05D006485 2.4e-57 226.1 181 61.3
SGA_v2.0_scaffold32G13165 Striga asiatica HOM05D005274 ORTHO05D006485 2.4e-57 226.1 184 60.3
VMungo1309G1271 Vigna mungo HOM05D005274 ORTHO05D006485 4.1e-57 225.3 195 59.0
Medtr5g071380 Medicago truncatula HOM05D005274 ORTHO05D006485 6.9e-57 224.6 181 60.8
HanXRQChr07g0200241 Helianthus annuus HOM05D005274 ORTHO05D006485 1.2e-56 223.8 184 59.2
Oeu020806.2 Olea europaea HOM05D005274 ORTHO05D006485 1.2e-56 223.8 184 59.8
Dinv33272 Davidia involucrata HOM05D005274 ORTHO05D006485 2.0e-56 223.0 185 59.5
Oeu034171.3 Olea europaea HOM05D005274 ORTHO05D006485 2.0e-56 223.0 186 59.7
CiPaw.04G000800 Carya illinoinensis HOM05D005274 ORTHO05D006485 2.6e-56 222.6 184 63.0
Migut.B00249 Erythranthe guttata HOM05D005274 ORTHO05D006485 7.6e-56 221.1 184 59.8
Lsat_1_v5_gn_2_86720 Lactuca sativa HOM05D005274 ORTHO05D006485 7.6e-56 221.1 184 58.7
Ciclev10016162m.g Citrus clementina HOM05D005274 ORTHO05D006485 1.0e-55 220.7 190 61.6
vmacro18391 Vaccinium macrocarpon HOM05D005274 ORTHO05D006485 1.0e-55 220.7 186 57.0
CSS0033174 Camellia sinensis var. sinensis HOM05D005274 ORTHO05D006485 1.3e-55 220.3 188 59.0
Glyma.14G044800 Glycine max HOM05D005274 ORTHO05D006485 1.3e-55 220.3 195 57.9
TPR.G27812 Trifolium pratense HOM05D005274 ORTHO05D006485 1.3e-55 220.3 183 59.6
TAR381G1230 Trochodendron aralioides HOM05D005274 ORTHO05D006485 1.3e-55 220.3 184 58.7
Eucgr.I01592 Eucalyptus grandis HOM05D005274 ORTHO05D006485 1.7e-55 219.9 196 57.7
Lj9A368G50 Lonicera japonica HOM05D005274 ORTHO05D006485 1.7e-55 219.9 180 58.9
Manes.11G112500 Manihot esculenta HOM05D005274 ORTHO05D006485 2.2e-55 219.5 194 55.2
unitig_744.g24245 Utricularia gibba HOM05D005274 ORTHO05D006485 2.2e-55 219.5 190 58.4
Rhsim08G0038500 Rhododendron simsii HOM05D005274 ORTHO05D006485 5.0e-55 218.4 186 57.5
Gohir.D11G068400 Gossypium hirsutum HOM05D005274 ORTHO05D006485 8.4e-55 217.6 183 59.6
Glyma.02G271800 Glycine max HOM05D005274 ORTHO05D006485 1.1e-54 217.2 195 57.9
TAR624G0372 Trochodendron aralioides HOM05D005274 ORTHO05D006485 1.1e-54 217.2 198 57.6
Gorai.007G073200 Gossypium raimondii HOM05D005274 ORTHO05D006485 1.4e-54 216.9 183 59.6
ECA238G2078 Erigeron canadensis HOM05D005274 ORTHO05D006485 2.5e-54 216.1 184 58.2
Gohir.A11G064100 Gossypium hirsutum HOM05D005274 ORTHO05D006485 4.2e-54 215.3 183 59.6
SalBow6G6215 Salvia bowleyana HOM05D005274 ORTHO05D006485 5.5e-54 214.9 185 57.8
Potri.004G197200 Populus trichocarpa HOM05D005274 ORTHO05D006485 7.2e-54 214.5 183 56.3
Sabra04G0133600 Salix brachista HOM05D005274 ORTHO05D006485 9.3e-54 214.2 183 57.4
LjContig00564g0024425 Lotus japonicus HOM05D005274 ORTHO05D006485 1.2e-53 213.8 181 58.0
SalBow6G5022 Salvia bowleyana HOM05D005274 ORTHO05D006485 1.2e-53 213.8 185 57.3
Atru.chr6.2707 Acer truncatum HOM05D005274 ORTHO05D006485 2.1e-53 213.0 190 58.4
Duzib187G0989 Durio zibethinus HOM05D005274 ORTHO05D006485 2.1e-53 213.0 189 56.6
Psat2g056880 Pisum sativum HOM05D005274 ORTHO05D006485 2.7e-53 212.6 181 56.9
Ca_26258_v3 Cicer arietinum L. HOM05D005274 ORTHO05D006485 3.5e-53 212.2 188 55.9
Nn8g40353 Nelumbo nucifera HOM05D005274 ORTHO05D006485 3.5e-53 212.2 190 54.2
Lalb_Chr10g0096401 Lupinus albus HOM05D005274 ORTHO05D006485 7.9e-53 211.1 190 55.8
Thecc.04G049000 Theobroma cacao HOM05D005274 ORTHO05D006485 7.9e-53 211.1 183 58.5
PSO063G1622 Papaver somniferum HOM05D005274 ORTHO05D006485 2.3e-52 209.5 182 58.2
PGSC0003DMG400011003 Solanum tuberosum HOM05D005274 ORTHO05D006485 5.1e-52 208.4 184 57.1
THA.LOC104802536 Tarenaya hassleriana HOM05D005274 ORTHO05D006485 8.7e-52 207.6 190 56.3
arahy.Tifrunner.gnm1.ann1.5GP605 Arachis hypogaea HOM05D005274 ORTHO05D006485 3.3e-51 205.7 195 52.8
Phvul.005G158400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 5.7e-51 204.9 195 53.3
Sc14g0002660 Simmondsia chinensis HOM05D005274 ORTHO05D006485 7.4e-51 204.5 184 54.9
arahy.Tifrunner.gnm1.ann1.T7P6Q4 Arachis hypogaea HOM05D005274 ORTHO05D006485 9.7e-51 204.1 195 51.8
DCAR_022112 Daucus carota HOM05D005274 ORTHO05D006485 2.2e-50 203.0 195 51.8
PSO017G0788 Papaver somniferum HOM05D005274 ORTHO05D006485 2.2e-50 203.0 182 56.6
PGR142G3427 Punica granatum HOM05D005274 ORTHO05D006485 4.8e-50 201.8 192 54.2
CsaV3_5G024970 Cucumis sativus L. HOM05D005274 ORTHO05D006485 1.1e-49 200.7 183 54.1
ClCG01G008500 Citrullus lanatus HOM05D005274 ORTHO05D006485 4.1e-49 198.7 183 53.0
MELO3C005096.2 Cucumis melo HOM05D005274 ORTHO05D006485 4.1e-49 198.7 183 53.6
Hma1.2p1_0474F.1_g160740 Hydrangea macrophylla HOM05D005274 ORTHO05D006485 4.1e-49 198.7 179 58.1
Sed0000255 Sechium edule HOM05D005274 ORTHO05D006485 4.1e-49 198.7 182 53.3
AL4G30540 Arabidopsis lyrata HOM05D005274 ORTHO05D006485 1.5e-48 196.8 183 54.6
AT2G34570 Arabidopsis thaliana HOM05D005274 ORTHO05D006485 2.0e-48 196.4 183 54.1
AUR62017870 Chenopodium quinoa HOM05D005274 ORTHO05D006485 1.0e-47 194.1 194 53.1
CANSAT54G1155 Cannabis sativa HOM05D005274 ORTHO05D006485 1.3e-47 193.7 180 52.8
Thhalv10017887m.g Eutrema salsugineum HOM05D005274 ORTHO05D006485 1.3e-47 193.7 183 52.5
AUR62009346 Chenopodium quinoa HOM05D005274 ORTHO05D006485 2.9e-47 192.6 194 53.1
Carub.0004s1624 Capsella rubella HOM05D005274 ORTHO05D006485 3.8e-47 192.2 183 51.9
SHI33526 Sapria himalayana HOM05D005274 ORTHO05D006485 1.1e-46 190.7 189 50.8
SHI31386 Sapria himalayana HOM05D005274 ORTHO05D006485 3.2e-46 189.1 187 50.8
CARHR128660 Cardamine hirsuta HOM05D005274 ORTHO05D006485 7.2e-46 188.0 183 50.3
EL10Ac6g13414 Beta vulgaris HOM05D005274 ORTHO05D006485 9.4e-46 187.6 193 51.8
Sp4g16830 Schrenkiella parvula HOM05D005274 ORTHO05D006485 1.2e-45 187.2 183 52.5
Aa31LG10G6820 Aethionema arabicum HOM05D005274 ORTHO05D006485 3.6e-45 185.7 215 46.5
Hund29750 Selenicereus undatus HOM05D005274 ORTHO05D006485 4.6e-45 185.3 191 51.3
Hund29752 Selenicereus undatus HOM05D005274 ORTHO05D006485 4.6e-45 185.3 191 51.3
BcaB01g06368 Brassica carinata HOM05D005274 ORTHO05D006485 6.1e-45 184.9 183 50.3
Aqoxy5G02491 Aquilegia oxysepala HOM05D005274 ORTHO05D006485 1.0e-44 184.1 185 50.8
A03p19190 Brassica napus HOM05D005274 ORTHO05D006485 1.8e-44 183.3 183 50.3
BraA03t11174Z Brassica rapa HOM05D005274 ORTHO05D006485 1.8e-44 183.3 183 50.3
BcaC01g05789 Brassica carinata HOM05D005274 ORTHO05D006485 5.1e-44 181.8 183 50.3
BolC3t14622H Brassica oleracea HOM05D005274 ORTHO05D006485 5.1e-44 181.8 183 50.3
C03p22390 Brassica napus HOM05D005274 ORTHO05D006485 6.7e-44 181.4 183 50.3
Potri.009G159400 Populus trichocarpa HOM05D005274 ORTHO05D006485 2.0e-43 179.9 176 51.1
Os02g0468200 Oryza sativa ssp. japonica HOM05D005274 ORTHO05D006485 1.4e-41 173.7 184 49.5
HPP92_002470 Vanilla planifolia HOM05D005274 ORTHO05D006485 1.0e-39 167.5 138 55.8
AUR62037816 Chenopodium quinoa HOM05D005274 ORTHO05D006485 1.7e-39 166.8 194 47.4
TWI32G1102 Tripterygium wilfordii HOM05D005274 ORTHO05D006485 5.0e-39 165.2 210 43.3
Zm00001eb319780 Zea mays HOM05D005274 ORTHO05D006485 5.0e-39 165.2 184 46.2
Sopen10g034190 Solanum pennellii HOM05D005274 ORTHO05D006485 2.1e-37 159.8 163 52.8
Cc00_g27920 Coffea canephora HOM05D005274 ORTHO05D006485 1.0e-36 157.5 163 49.1
Ah.10g032810 Amaranthus hybridus HOM05D005274 ORTHO05D006485 1.8e-36 156.8 188 45.2
BcaC02g11519 Brassica carinata HOM05D005274 ORTHO05D006485 6.7e-36 154.8 138 53.6
BolC4t23029H Brassica oleracea HOM05D005274 ORTHO05D006485 2.0e-35 153.3 141 52.5
ATR1136G175 Amborella trichopoda HOM05D005274 ORTHO05D006485 2.6e-35 152.9 184 42.9
COL.COLO4_13388 Corchorus olitorius HOM05D005274 ORTHO05D006485 7.4e-35 151.4 183 45.4
Pp3c2_27880 Physcomitrium patens HOM05D005274 ORTHO05D006485 2.4e-33 146.4 188 42.0
Mapoly0006s0036 Marchantia polymorpha HOM05D005274 ORTHO05D006485 7.0e-33 144.8 183 40.4
SMO347G0017 Selaginella moellendorffii HOM05D005274 ORTHO05D006485 6.5e-31 138.3 185 43.2
AagrBONN_evm.TU.Sc2ySwM_228.2974 Anthoceros agrestis HOM05D005274 ORTHO05D006485 3.2e-30 136.0 191 36.1
Nitab4.5_0000568g0280 Nicotiana tabacum HOM05D005274 ORTHO05D006485 2.6e-27 126.3 195 37.9
Solyc10g084740.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 3.3e-27 125.9 209 38.3
SEGI_17090 Sequoiadendron giganteum HOM05D005274 ORTHO05D006485 6.3e-26 121.7 132 45.5
Actinidia19548 Actinidia chinensis HOM05D005274 ORTHO05D006485 2.4e-25 119.8 109 56.0
C04p14460 Brassica napus HOM05D005274 ORTHO05D006485 5.3e-25 118.6 141 45.4
CBR_g8346 Chara braunii HOM05D005274 ORTHO05D006485 1.2e-24 117.5 189 36.5
Cc00_g29040 Coffea canephora HOM05D005274 ORTHO05D006485 3.8e-23 112.5 88 59.1
Phvul.005G025400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 1.4e-17 94.0 169 34.9
MCO15G315 Micromonas commoda HOM05D005274 ORTHO05D006485 4.5e-16 89.0 187 32.1
Sabra02G0148900 Salix brachista HOM05D005274 ORTHO05D006485 3.2e-14 82.8 111 37.8
Sabra10G0082800 Salix brachista HOM05D005274 ORTHO05D006485 3.2e-14 82.8 111 37.8
PGR142G3154 Punica granatum HOM05D005274 ORTHO05D006485 1.7e-10 70.5 113 36.3
Cre11.g480800 Chlamydomonas reinhardtii HOM05D005274 ORTHO05D006485 2.8e-10 69.7 210 25.2
CDE04G1865 Ceratophyllum demersum HOM05D000386 ORTHO05D000406 6.3e-10 68.6 57 56.1
Sabra07G0096200 Salix brachista HOM05D005274 ORTHO05D006765 1.8e-09 67.0 91 41.8
CSS0005176 Camellia sinensis var. sinensis HOM05D005274 ORTHO05D006485 4.5e-08 62.4 55 58.2
Nn8g41301 Nelumbo nucifera HOM05D005274 ORTHO05D006485 1.7e-07 60.5 55 56.4
PRCOL_00002591 Prasinoderma coloniale HOM05D005274 ORTHO05D006485 9.5e-06 54.7 159 27.7


User provided reference genes

Program Settings