Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1246300 Malus domestica HOM05D005890 ORTHO05D006717 2.9e-244 848.2 451 100.0
MD13G1240600 Malus domestica HOM05D005890 ORTHO05D006717 1.3e-167 593.6 444 76.6
Prupe.1G073000 Prunus persica HOM05D005890 ORTHO05D006717 1.1e-107 394.4 487 55.4
FAN12G2329 Fragaria x ananassa HOM05D005890 ORTHO05D006717 2.0e-99 367.1 463 52.9
FAN07G1770 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.2e-96 357.8 456 52.4
FAN17G2561 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.9e-94 350.5 463 51.8
RcHm_v2.0_Chr4g0398981 Rosa chinensis HOM05D005890 ORTHO05D006717 1.8e-84 317.4 489 47.4
QL07p048247 Quercus lobata HOM05D005890 ORTHO05D006717 1.5e-75 287.7 506 43.9
Cfa013466 Carpinus fangiana HOM05D005890 ORTHO05D006717 2.5e-70 270.4 499 43.3
Dinv41195 Davidia involucrata HOM05D005890 ORTHO05D006717 3.6e-69 266.5 594 39.4
Duzib170G1164 Durio zibethinus HOM05D005890 ORTHO05D006717 2.0e-67 260.8 534 40.1
FvH4_4g06950 Fragaria vesca HOM05D005890 ORTHO05D006717 4.4e-67 259.6 407 46.9
Potri.018G140200 Populus trichocarpa HOM05D005890 ORTHO05D006717 1.4e-65 254.6 499 41.1
ClCG06G013720 Citrullus lanatus HOM05D005890 ORTHO05D006717 5.4e-65 252.7 456 43.0
Dinv25461 Davidia involucrata HOM05D005890 ORTHO05D006717 1.2e-64 251.5 533 39.6
MELO3C006422.2 Cucumis melo HOM05D005890 ORTHO05D006717 1.7e-63 247.7 467 42.6
CANSAT01G0113 Cannabis sativa HOM05D005890 ORTHO05D006717 3.3e-62 243.4 453 42.4
Sed0014693 Sechium edule HOM05D005890 ORTHO05D006717 2.8e-61 240.4 468 42.3
Thecc.09G191500 Theobroma cacao HOM05D005890 ORTHO05D006717 1.8e-60 237.7 510 39.6
CsaV3_3G012070 Cucumis sativus L. HOM05D005890 ORTHO05D006717 4.0e-60 236.5 464 41.4
Eucgr.C02214 Eucalyptus grandis HOM05D005890 ORTHO05D006717 8.9e-60 235.3 494 39.3
TWI32G1283 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 2.0e-59 234.2 491 40.3
Medtr4g127160 Medicago truncatula HOM05D005890 ORTHO05D006717 9.9e-59 231.9 437 41.2
Glyma.13G101600 Glycine max HOM05D005890 ORTHO05D006717 4.9e-58 229.6 448 40.2
Phvul.003G140452 Phaseolus vulgaris HOM05D005890 ORTHO05D006717 4.9e-58 229.6 445 39.3
Glyma.17G058000 Glycine max HOM05D005890 ORTHO05D006717 8.3e-58 228.8 413 42.6
VMungo1215G0729 Vigna mungo HOM05D005890 ORTHO05D006717 1.1e-57 228.4 445 40.4
Ciclev10008727m.g Citrus clementina HOM05D005890 ORTHO05D006717 4.1e-57 226.5 273 54.6
Hma1.2p1_0235F.1_g098760 Hydrangea macrophylla HOM05D005890 ORTHO05D006717 2.1e-56 224.2 483 39.1
Nn8g40670 Nelumbo nucifera HOM05D005890 ORTHO05D006717 6.0e-56 222.6 601 34.4
CiPaw.07G198700 Carya illinoinensis HOM05D005890 ORTHO05D006717 1.3e-55 221.5 439 41.2
Atru.BG.17.p Acer truncatum HOM05D005890 ORTHO05D006717 3.0e-55 220.3 433 40.9
Rhsim01G0114500 Rhododendron simsii HOM05D005890 ORTHO05D006717 3.0e-55 220.3 525 36.8
GSVIVG01029286001 Vitis vinifera HOM05D005890 ORTHO05D006717 3.0e-55 220.3 490 38.6
Manes.06G017800 Manihot esculenta HOM05D005890 ORTHO05D006717 1.5e-54 218.0 487 38.6
Lj4g0027857 Lotus japonicus HOM05D005890 ORTHO05D006717 6.2e-53 212.6 456 37.5
Sabra06G0054500 Salix brachista HOM05D005890 ORTHO05D006717 5.2e-52 209.5 488 38.7
Sed0024384 Sechium edule HOM05D005890 ORTHO05D006717 5.2e-52 209.5 418 40.4
Gorai.012G008900 Gossypium raimondii HOM05D005890 ORTHO05D006717 1.5e-51 208.0 472 38.3
Cc03_g15250 Coffea canephora HOM05D005890 ORTHO05D006717 3.4e-51 206.8 503 36.0
DCAR_018014 Daucus carota HOM05D005890 ORTHO05D006717 4.4e-51 206.5 429 38.7
Atru.chr7.926 Acer truncatum HOM05D005890 ORTHO05D006717 1.4e-49 201.4 200 59.0
HanXRQChr03g0065401 Helianthus annuus HOM05D005890 ORTHO05D006717 9.2e-49 198.7 440 38.2
Lalb_Chr13g0299851 Lupinus albus HOM05D005890 ORTHO05D006717 1.2e-48 198.4 444 38.5
Potri.006G073100 Populus trichocarpa HOM05D005890 ORTHO05D006717 1.2e-48 198.4 493 36.9
CSS0049336 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 1.6e-48 198.0 406 40.9
Peaxi162Scf00046g00417 Petunia axillaris HOM05D005890 ORTHO05D006717 2.7e-48 197.2 453 37.3
Nitab4.5_0000028g0410 Nicotiana tabacum HOM05D005890 ORTHO05D006717 3.0e-47 193.7 437 37.8
arahy.Tifrunner.gnm1.ann1.V3N0NP Arachis hypogaea HOM05D005890 ORTHO05D006717 8.7e-47 192.2 466 36.3
arahy.Tifrunner.gnm1.ann1.CB00ZF Arachis hypogaea HOM05D005890 ORTHO05D006717 1.5e-46 191.4 467 37.5
unitig_8.g3553 Utricularia gibba HOM05D005890 ORTHO05D006717 2.5e-46 190.7 462 34.8
Actinidia02494 Actinidia chinensis HOM05D005890 ORTHO05D006717 3.3e-46 190.3 507 36.7
Sopen07g004220 Solanum pennellii HOM05D005890 ORTHO05D006717 5.6e-46 189.5 441 36.3
Gohir.A05G408300 Gossypium hirsutum HOM05D005890 ORTHO05D006717 7.3e-46 189.1 461 36.4
Migut.L01872 Erythranthe guttata HOM05D005890 ORTHO05D006717 9.6e-46 188.7 440 36.1
SGA_v2.0_scaffold41G15805 Striga asiatica HOM05D005890 ORTHO05D006717 1.3e-45 188.3 511 35.0
TWI34G1560 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 2.1e-45 187.6 452 37.8
PGR044G2166 Punica granatum HOM05D005890 ORTHO05D006717 3.6e-45 186.8 505 36.8
PGSC0003DMG400019897 Solanum tuberosum HOM05D005890 ORTHO05D006717 4.0e-44 183.3 452 36.7
vmacro20806 Vaccinium macrocarpon HOM05D005890 ORTHO05D006717 5.3e-44 183.0 325 44.3
Solyc07g008330.3 Solanum lycopersicum HOM05D005890 ORTHO05D006717 6.9e-44 182.6 439 35.8
COL.COLO4_08570 Corchorus olitorius HOM05D005890 ORTHO05D006717 1.2e-43 181.8 587 32.5
ECA240G0208 Erigeron canadensis HOM05D005890 ORTHO05D006717 2.6e-43 180.6 505 33.9
MSTRG.26556 Avicennia marina HOM05D005890 ORTHO05D006717 5.8e-43 179.5 478 32.2
THA.LOC104817770 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 9.9e-43 178.7 463 35.0
CAN.G403.1 Capsicum annuum HOM05D005890 ORTHO05D006717 1.7e-42 177.9 447 34.9
Oeu063100.1 Olea europaea HOM05D005890 ORTHO05D006717 3.8e-42 176.8 165 61.8
AUR62027422 Chenopodium quinoa HOM05D005890 ORTHO05D006717 6.4e-42 176.0 451 36.1
Lsat_1_v5_gn_7_55781 Lactuca sativa HOM05D005890 ORTHO05D006717 1.4e-41 174.9 465 34.8
Aqoxy7G02888 Aquilegia oxysepala HOM05D005890 ORTHO05D006717 7.1e-41 172.6 478 36.0
Thhalv10013871m.g Eutrema salsugineum HOM05D005890 ORTHO05D006717 1.6e-40 171.4 452 34.5
Hund24378 Selenicereus undatus HOM05D005890 ORTHO05D006717 1.6e-40 171.4 462 33.3
Nitab4.5_0004916g0020 Nicotiana tabacum HOM05D005890 ORTHO05D006717 4.6e-40 169.9 457 34.8
EL10Ac8g19296 Beta vulgaris HOM05D005890 ORTHO05D006717 1.0e-39 168.7 458 32.5
Aa31LG3G13020 Aethionema arabicum HOM05D005890 ORTHO05D006717 1.3e-39 168.3 456 33.6
Sp6g18850 Schrenkiella parvula HOM05D005890 ORTHO05D006717 1.3e-39 168.3 455 34.3
HPP92_018699 Vanilla planifolia HOM05D005890 ORTHO05D006717 4.3e-38 163.3 453 35.3
ECA234G0353 Erigeron canadensis HOM05D005890 ORTHO05D006717 9.6e-38 162.2 137 65.7
AUR62031274 Chenopodium quinoa HOM05D005890 ORTHO05D006717 1.3e-37 161.8 437 35.0
SGA_v2.0_scaffold392G50652 Striga asiatica HOM05D005890 ORTHO05D006717 2.1e-37 161.0 286 40.2
TPR.G5393 Trifolium pratense HOM05D005890 ORTHO05D006717 2.1e-37 161.0 442 36.7
ATR1098G092 Amborella trichopoda HOM05D005890 ORTHO05D006717 4.8e-37 159.8 270 41.9
CDE02G0471 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 4.8e-37 159.8 472 34.3
TAR637G0001 Trochodendron aralioides HOM05D005890 ORTHO05D006717 1.1e-36 158.7 87 83.9
MBI18_g10586_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 2.4e-36 157.5 520 33.1
HanXRQChr10g0308981 Helianthus annuus HOM05D005890 ORTHO05D006717 3.1e-36 157.1 424 33.7
Lsat_1_v5_gn_5_83860 Lactuca sativa HOM05D005890 ORTHO05D006717 5.3e-36 156.4 107 72.0
THA.LOC104813501 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 2.0e-35 154.5 415 36.1
PSO063G0609 Papaver somniferum HOM05D005890 ORTHO05D006717 3.4e-35 153.7 468 32.7
Os12g0613500 Oryza sativa ssp. japonica HOM05D005890 ORTHO05D006717 4.5e-35 153.3 420 35.5
Psat4g014480 Pisum sativum HOM05D005890 ORTHO05D006717 4.5e-35 153.3 147 61.2
CARHR270890 Cardamine hirsuta HOM05D005890 ORTHO05D006717 6.4e-34 149.4 453 32.9
CiPaw.08G031700 Carya illinoinensis HOM05D005890 ORTHO05D006717 6.4e-34 149.4 462 33.5
Ca_21262_v3 Cicer arietinum L. HOM05D005890 ORTHO05D006717 6.4e-34 149.4 437 31.4
Haze_22044 Corylus avellana HOM05D005890 ORTHO05D006717 5.4e-33 146.4 221 46.2
MBI14_g15782_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 1.2e-32 145.2 262 41.6
SEGI_20539 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 3.5e-32 143.7 153 51.6
PSO170G0082 Papaver somniferum HOM05D005890 ORTHO05D006717 6.0e-32 142.9 475 32.2
Zm00001eb136110 Zea mays HOM05D005890 ORTHO05D006717 1.0e-31 142.1 324 35.5
BcaB05g22318 Brassica carinata HOM05D005890 ORTHO05D006717 2.3e-31 141.0 452 31.6
Ah.14g085350 Amaranthus hybridus HOM05D005890 ORTHO05D006717 3.9e-31 140.2 434 32.3
BcaB08g36002 Brassica carinata HOM05D005890 ORTHO05D006717 6.7e-31 139.4 117 63.2
Sabra18G0114500 Salix brachista HOM05D005890 ORTHO05D006717 8.7e-31 139.0 445 33.0
CDE05G3513 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 3.3e-30 137.1 454 32.2
BcaC03g14182 Brassica carinata HOM05D005890 ORTHO05D006717 2.8e-29 134.0 454 32.2
C02p14590 Brassica napus HOM05D005890 ORTHO05D006717 2.8e-29 134.0 454 32.2
BolC2t07586H Brassica oleracea HOM05D005890 ORTHO05D006717 2.8e-29 134.0 454 32.2
BcaC04g20011 Brassica carinata HOM05D005890 ORTHO05D006717 1.2e-27 128.6 411 31.1
Cpa.g.sc115.65 Carica papaya HOM05D005890 ORTHO05D006717 2.6e-27 127.5 300 40.0
C09p48820 Brassica napus HOM05D005890 ORTHO05D006717 4.5e-27 126.7 410 30.7
BolC9t57729H Brassica oleracea HOM05D005890 ORTHO05D006717 4.5e-27 126.7 410 30.7
Pp3c3_34440 Physcomitrium patens HOM05D005890 ORTHO05D006717 4.5e-27 126.7 161 50.3
Pp3c3_34441 Physcomitrium patens HOM05D005890 ORTHO05D006717 4.5e-27 126.7 161 50.3
BraA02t05941Z Brassica rapa HOM05D005890 ORTHO05D006717 2.2e-26 124.4 454 31.9
A02p08710 Brassica napus HOM05D005890 ORTHO05D006717 3.8e-26 123.6 452 30.8
Mapoly0009s0141 Marchantia polymorpha HOM05D005890 ORTHO05D006717 1.1e-25 122.1 97 58.8
Zm00001eb172010 Zea mays HOM05D005890 ORTHO05D006717 3.2e-25 120.6 87 65.5
AT5G57120 Arabidopsis thaliana HOM05D005890 ORTHO05D006717 1.2e-24 118.6 101 62.4
Gohir.D04G007200 Gossypium hirsutum HOM05D005890 ORTHO05D006717 2.1e-24 117.9 419 32.0
CBR_g20282 Chara braunii HOM05D000019 ORTHO05D000002 3.9e-23 113.6 73 68.5
CSS0049604 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 5.1e-23 113.2 413 33.7
AagrBONN_evm.TU.Sc2ySwM_368.973 Anthoceros agrestis HOM05D005890 ORTHO05D006717 1.1e-22 112.1 236 38.1
Carub.0008s1762 Capsella rubella HOM05D005890 ORTHO05D006717 1.1e-22 112.1 97 64.9
AL8G33040 Arabidopsis lyrata HOM05D005890 ORTHO05D006717 1.1e-20 105.5 101 58.4
SEGI_22268 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 1.4e-20 105.1 62 77.4
Cre01.g055400 Chlamydomonas reinhardtii HOM05D005890 ORTHO05D006717 3.7e-13 80.5 94 55.3
Cpa.g.c33129.1 Carica papaya HOM05D005890 ORTHO05D006717 4.8e-13 80.1 143 39.2
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 1.4e-12 78.6 365 28.2
DCAR_029041 Daucus carota HOM05D005890 ORTHO05D006717 6.9e-12 76.3 254 34.3
MCO09G065 Micromonas commoda HOM05D005890 ORTHO05D006717 4.5e-11 73.6 81 56.8
Zm00001eb394450 Zea mays HOM05D014690 ORTHO05D006717 4.5e-11 73.6 55 63.6
A10p14440 Brassica napus HOM05D005890 ORTHO05D006717 2.3e-07 61.2 34 79.4
BraA10t43535Z Brassica rapa HOM05D005890 ORTHO05D006717 2.3e-07 61.2 34 79.4
DCAR_001127 Daucus carota HOM05D000703 ORTHO05D006717 2.0e-06 58.2 76 50.0


User provided reference genes

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