Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1244100 Malus domestica HOM05D003593 ORTHO05D004064 2.2e-97 359.0 185 100.0
MD13G1238800 Malus domestica HOM05D003593 ORTHO05D004064 7.1e-56 221.1 135 85.9
Prupe.1G071200 Prunus persica HOM05D003593 ORTHO05D004064 8.7e-54 214.2 135 84.4
Prupe.2G148000 Prunus persica HOM05D003593 ORTHO05D004064 4.3e-53 211.8 135 82.2
MD08G1104600 Malus domestica HOM05D003593 ORTHO05D004064 9.6e-53 210.7 146 79.5
RcHm_v2.0_Chr6g0268981 Rosa chinensis HOM05D003593 ORTHO05D004064 4.1e-51 205.3 135 77.0
RcHm_v2.0_Chr5g0056791 Rosa chinensis HOM05D003593 ORTHO05D004064 1.5e-50 203.4 135 76.3
FvH4_2g10880 Fragaria vesca HOM05D003593 ORTHO05D004064 1.0e-49 200.7 136 74.3
FAN15G1423 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.3e-49 200.3 135 74.8
FAN24G3005 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.3e-49 200.3 136 74.3
FAN20G0230 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.2e-49 199.5 135 74.8
Potri.018G133700 Populus trichocarpa HOM05D003593 ORTHO05D004064 2.1e-39 166.4 135 64.4
Thecc.09G252700 Theobroma cacao HOM05D003593 ORTHO05D004064 1.0e-38 164.1 143 62.2
QL03p003697 Quercus lobata HOM05D003593 ORTHO05D004064 1.4e-38 163.7 135 65.2
Gohir.D10G156600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 1.8e-38 163.3 146 60.3
Gorai.011G174800 Gossypium raimondii HOM05D003593 ORTHO05D004064 1.8e-38 163.3 146 60.3
Gohir.A10G111600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 2.3e-38 162.9 146 60.3
Duzib068G0242 Durio zibethinus HOM05D003593 ORTHO05D004064 3.0e-38 162.5 143 62.2
CiPaw.07G199700 Carya illinoinensis HOM05D003593 ORTHO05D004064 8.8e-38 161.0 135 63.0
GSVIVG01029263001 Vitis vinifera HOM05D003593 ORTHO05D004064 8.8e-38 161.0 134 62.7
GSVIVG01025934001 Vitis vinifera HOM05D003593 ORTHO05D004064 1.1e-37 160.6 131 63.4
Sabra18G0113300 Salix brachista HOM05D003593 ORTHO05D004064 3.3e-37 159.1 139 64.0
Actinidia21188 Actinidia chinensis HOM05D003593 ORTHO05D004064 4.4e-37 158.7 141 63.8
CSS0014982 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 9.7e-37 157.5 112 73.2
Ciclev10021956m.g Citrus clementina HOM05D003593 ORTHO05D004064 1.7e-36 156.8 136 60.3
GSVIVG01033604001 Vitis vinifera HOM05D003593 ORTHO05D004064 4.8e-36 155.2 131 61.1
CANSAT01G0027 Cannabis sativa HOM05D003593 ORTHO05D004064 8.2e-36 154.5 140 62.1
COL.COLO4_13717 Corchorus olitorius HOM05D003593 ORTHO05D004064 8.2e-36 154.5 147 59.2
Atru.chr1.1670 Acer truncatum HOM05D003593 ORTHO05D004064 1.1e-35 154.1 139 60.4
Ciclev10032601m.g Citrus clementina HOM05D003593 ORTHO05D004064 1.4e-35 153.7 136 59.6
HanXRQChr04g0113781 Helianthus annuus HOM05D003593 ORTHO05D004064 4.1e-35 152.1 157 56.1
QL02p059634 Quercus lobata HOM05D003593 ORTHO05D004064 5.3e-35 151.8 163 55.2
Dinv34117 Davidia involucrata HOM05D003593 ORTHO05D004064 4.5e-34 148.7 133 63.2
CiPaw.08G030900 Carya illinoinensis HOM05D003593 ORTHO05D004064 5.9e-34 148.3 134 61.9
CSS0019003 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.0e-33 147.5 126 64.3
ClCG06G013760 Citrullus lanatus HOM05D003593 ORTHO05D004064 1.0e-33 147.5 137 61.3
Lj1C63T22 Lonicera japonica HOM05D003593 ORTHO05D004064 1.0e-33 147.5 134 61.9
FAN05G2468 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.2e-33 146.4 155 52.9
FvH4_6g47540 Fragaria vesca HOM05D003593 ORTHO05D004064 2.9e-33 146.0 155 52.9
Cpa.g.sc103.74 Carica papaya HOM05D003593 ORTHO05D004064 3.8e-33 145.6 117 67.5
ECA236G3417 Erigeron canadensis HOM05D003593 ORTHO05D004064 3.8e-33 145.6 156 51.9
Nitab4.5_0010661g0020 Nicotiana tabacum HOM05D003593 ORTHO05D004064 3.8e-33 145.6 134 60.4
FAN14G2581 Fragaria x ananassa HOM05D003593 ORTHO05D004064 5.0e-33 145.2 126 61.1
Lj4g0003900 Lotus japonicus HOM05D003593 ORTHO05D004064 5.0e-33 145.2 135 62.2
Manes.03G101800 Manihot esculenta HOM05D003593 ORTHO05D004064 6.5e-33 144.8 129 61.2
CsaV3_3G012080 Cucumis sativus L. HOM05D003593 ORTHO05D004064 8.5e-33 144.4 137 61.3
FAN02G4054 Fragaria x ananassa HOM05D003593 ORTHO05D004064 8.5e-33 144.4 155 52.3
Solyc02g069380.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 8.5e-33 144.4 135 61.5
Sopen02g018530 Solanum pennellii HOM05D003593 ORTHO05D004064 8.5e-33 144.4 135 61.5
AL5G36800 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 2.5e-32 142.9 154 54.5
CSS0033341 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 4.2e-32 142.1 112 68.8
CSS0039493 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 4.2e-32 142.1 112 68.8
Cfa013477 Carpinus fangiana HOM05D003593 ORTHO05D004064 4.2e-32 142.1 136 57.4
AT3G55600 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 5.5e-32 141.7 154 53.9
Eucgr.F03860 Eucalyptus grandis HOM05D003593 ORTHO05D004064 7.2e-32 141.4 134 56.7
FAN09G1792 Fragaria x ananassa HOM05D003593 ORTHO05D004064 7.2e-32 141.4 154 51.9
FAN09G2125 Fragaria x ananassa HOM05D003593 ORTHO05D004064 7.2e-32 141.4 154 51.9
FAN09G2587 Fragaria x ananassa HOM05D003593 ORTHO05D004064 7.2e-32 141.4 154 51.9
Nitab4.5_0000630g0070 Nicotiana tabacum HOM05D003593 ORTHO05D004064 7.2e-32 141.4 134 59.7
VMungo1215G1259 Vigna mungo HOM05D003593 ORTHO05D004064 7.2e-32 141.4 135 60.0
Glyma.17G056700 Glycine max HOM05D003593 ORTHO05D004064 9.4e-32 141.0 135 60.7
Nn8g40907 Nelumbo nucifera HOM05D003593 ORTHO05D004064 9.4e-32 141.0 108 70.4
Sc03g0009620 Simmondsia chinensis HOM05D003593 ORTHO05D004064 9.4e-32 141.0 160 54.4
Carub.0003s3082 Capsella rubella HOM05D003593 ORTHO05D004064 1.2e-31 140.6 154 54.5
Phvul.003G138826 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 1.2e-31 140.6 135 59.3
Phvul.003G139226 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 1.2e-31 140.6 135 59.3
Glyma.14G032100 Glycine max HOM05D003593 ORTHO05D004064 1.6e-31 140.2 135 60.7
Phvul.003G138700 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 1.6e-31 140.2 135 59.3
PGR142G0083 Punica granatum HOM05D003593 ORTHO05D004064 1.6e-31 140.2 134 56.7
Sed0017744 Sechium edule HOM05D003593 ORTHO05D004064 1.6e-31 140.2 148 53.4
Lsat_1_v5_gn_8_91320 Lactuca sativa HOM05D003593 ORTHO05D004064 2.1e-31 139.8 159 52.2
Rhsim01G0049400 Rhododendron simsii HOM05D003593 ORTHO05D004064 2.7e-31 139.4 110 67.3
Peaxi162Scf00195g00123 Petunia axillaris HOM05D003593 ORTHO05D004064 3.6e-31 139.0 135 58.5
CAN.G1497.5 Capsicum annuum HOM05D003593 ORTHO05D004064 4.7e-31 138.7 157 52.2
Glyma.13G102300 Glycine max HOM05D003593 ORTHO05D004064 4.7e-31 138.7 135 58.5
Sed0025908 Sechium edule HOM05D003593 ORTHO05D004064 4.7e-31 138.7 134 59.7
CAN.G675.9 Capsicum annuum HOM05D003593 ORTHO05D004064 6.1e-31 138.3 135 59.3
TWI39G0804 Tripterygium wilfordii HOM05D003593 ORTHO05D004064 6.1e-31 138.3 147 53.7
SGA_v2.0_scaffold10G05150 Striga asiatica HOM05D003593 ORTHO05D004064 1.0e-30 137.5 132 61.4
Rhsim01G0266500 Rhododendron simsii HOM05D003593 ORTHO05D004064 1.4e-30 137.1 131 60.3
CARHR165650 Cardamine hirsuta HOM05D003593 ORTHO05D004064 1.8e-30 136.7 136 58.1
Migut.D00405 Erythranthe guttata HOM05D003593 ORTHO05D004064 3.9e-30 135.6 133 60.9
THA.LOC104810051 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 3.9e-30 135.6 136 58.1
QL03p003406 Quercus lobata HOM05D003593 ORTHO05D004064 5.2e-30 135.2 198 44.4
Cc07_g18270 Coffea canephora HOM05D003593 ORTHO05D004064 6.7e-30 134.8 104 66.3
arahy.Tifrunner.gnm1.ann1.HDC0J8 Arachis hypogaea HOM05D003593 ORTHO05D004064 1.1e-29 134.0 138 58.0
arahy.Tifrunner.gnm1.ann1.PB4QPE Arachis hypogaea HOM05D003593 ORTHO05D004064 1.1e-29 134.0 138 58.0
THA.LOC104810053 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 1.5e-29 133.7 136 58.1
AUR62029320 Chenopodium quinoa HOM05D003593 ORTHO05D004064 2.0e-29 133.3 133 54.1
AUR62035376 Chenopodium quinoa HOM05D003593 ORTHO05D004064 2.0e-29 133.3 133 54.1
Sp1g35080 Schrenkiella parvula HOM05D003593 ORTHO05D004064 2.0e-29 133.3 133 58.6
Aqoxy5G00845 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 5.7e-29 131.7 123 61.0
Thhalv10011761m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 5.7e-29 131.7 154 51.3
MBI14_g31143_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 5.7e-29 131.7 115 62.6
Ca_21268_v3 Cicer arietinum L. HOM05D003593 ORTHO05D004064 7.4e-29 131.3 135 57.0
EL10Ac5g11509 Beta vulgaris HOM05D003593 ORTHO05D004064 1.3e-28 130.6 150 48.7
Lsat_1_v5_gn_9_9120 Lactuca sativa HOM05D003593 ORTHO05D004064 1.7e-28 130.2 134 57.5
Aa31LG5G19840 Aethionema arabicum HOM05D003593 ORTHO05D004064 2.8e-28 129.4 112 62.5
CSS0006561 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 3.7e-28 129.0 142 53.5
AT1G54110 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 4.8e-28 128.6 159 49.1
CDE06G1796 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 1.4e-27 127.1 125 58.4
Medtr4g126960 Medicago truncatula HOM05D003593 ORTHO05D004064 1.4e-27 127.1 136 56.6
AUR62029138 Chenopodium quinoa HOM05D003593 ORTHO05D004064 2.4e-27 126.3 123 56.1
Thhalv10010672m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 2.4e-27 126.3 154 49.4
MSTRG.21503 Avicennia marina HOM05D003593 ORTHO05D004064 3.1e-27 125.9 133 56.4
Medtr8g027710 Medicago truncatula HOM05D003593 ORTHO05D004064 3.1e-27 125.9 136 56.6
ATR0580G077 Amborella trichopoda HOM05D003593 ORTHO05D004064 9.1e-27 124.4 106 63.2
BcaB01g00076 Brassica carinata HOM05D003593 ORTHO05D004064 9.1e-27 124.4 154 47.4
CSS0030751 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 9.1e-27 124.4 127 57.5
Sopen02g013070 Solanum pennellii HOM05D003593 ORTHO05D004064 9.1e-27 124.4 158 49.4
TPR.G16420 Trifolium pratense HOM05D003593 ORTHO05D004064 9.1e-27 124.4 125 57.6
TPR.G5405 Trifolium pratense HOM05D003593 ORTHO05D004064 9.1e-27 124.4 136 55.1
BolC8t50717H Brassica oleracea HOM05D003593 ORTHO05D004064 2.0e-26 123.2 157 47.1
HanXRQChr10g0281101 Helianthus annuus HOM05D003593 ORTHO05D004064 2.0e-26 123.2 122 57.4
MBI16_g31002_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 2.0e-26 123.2 96 68.8
Sp5g06880 Schrenkiella parvula HOM05D003593 ORTHO05D004064 2.0e-26 123.2 154 48.7
BcaC07g39887 Brassica carinata HOM05D002600 ORTHO05D003013 2.6e-26 122.9 139 51.8
Oeu035605.1 Olea europaea HOM05D003593 ORTHO05D004064 2.6e-26 122.9 127 55.9
A09p48590 Brassica napus HOM05D003593 ORTHO05D004064 4.5e-26 122.1 139 51.8
BraA09t40311Z Brassica rapa HOM05D003593 ORTHO05D004064 4.5e-26 122.1 139 51.8
PSO170G4544 Papaver somniferum HOM05D003593 ORTHO05D004064 4.5e-26 122.1 106 65.1
Peaxi162Scf00956g00310 Petunia axillaris HOM05D003593 ORTHO05D004064 4.5e-26 122.1 156 48.7
Hund02205 Selenicereus undatus HOM05D003593 ORTHO05D004064 5.9e-26 121.7 112 57.1
Zm00001eb252050 Zea mays HOM05D003593 ORTHO05D004064 5.9e-26 121.7 111 63.1
AUR62015608 Chenopodium quinoa HOM05D003593 ORTHO05D004064 7.7e-26 121.3 162 46.9
Rhsim08G0153900 Rhododendron simsii HOM05D003593 ORTHO05D004064 7.7e-26 121.3 172 45.3
Zm00001eb036800 Zea mays HOM05D003593 ORTHO05D004064 1.0e-25 120.9 144 52.8
AL1G48760 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 1.3e-25 120.6 112 60.7
PSO063G1703 Papaver somniferum HOM05D003593 ORTHO05D004064 1.3e-25 120.6 106 64.2
AL6G40520 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 2.2e-25 119.8 112 60.7
C08p30910 Brassica napus HOM05D003593 ORTHO05D004064 2.9e-25 119.4 108 62.0
C08p30920 Brassica napus HOM05D003593 ORTHO05D004064 2.9e-25 119.4 159 45.9
unitig_22.g5286 Utricularia gibba HOM05D003593 ORTHO05D004064 5.0e-25 118.6 135 51.1
Os08g0533700 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 6.5e-25 118.2 108 62.0
PSO782G1623 Papaver somniferum HOM05D003593 ORTHO05D004064 1.5e-24 117.1 106 63.2
SalBow4G0244 Salvia bowleyana HOM05D003593 ORTHO05D004064 1.5e-24 117.1 132 54.5
MELO3C006423.2 Cucumis melo HOM05D003593 ORTHO05D004064 3.2e-24 115.9 109 60.6
Hma1.2p1_1219F.1_g267880 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 4.2e-24 115.5 135 51.9
Atru.chr10.1467 Acer truncatum HOM05D003593 ORTHO05D004064 7.2e-24 114.8 86 69.8
Thecc.10G141700 Theobroma cacao HOM05D003593 ORTHO05D004064 8.0e-23 111.3 109 56.0
Lalb_Chr12g0199721 Lupinus albus HOM05D003593 ORTHO05D004064 3.0e-22 109.4 136 48.5
MSTRG.18306 Avicennia marina HOM05D003593 ORTHO05D004064 5.2e-22 108.6 135 52.6
CSS0041369 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 5.2e-22 108.6 106 56.6
SEGI_30783 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 5.2e-22 108.6 107 56.1
SEGI_34697 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 5.2e-22 108.6 107 56.1
Manes.15G093801 Manihot esculenta HOM05D003593 ORTHO05D004064 1.2e-21 107.5 78 73.1
Hma1.2p1_0571F.1_g180780 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 3.3e-21 105.9 135 48.1
Ah.04g164950 Amaranthus hybridus HOM05D003593 ORTHO05D004064 1.1e-19 100.9 163 39.9
CDE02G1962 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 1.4e-19 100.5 84 65.5
Peaxi162Scf00074g00739 Petunia axillaris HOM05D003593 ORTHO05D004064 2.4e-19 99.8 134 48.5
Psat2g189400 Pisum sativum HOM05D003593 ORTHO05D004064 4.1e-19 99.0 108 53.7
Os09g0272500 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 7.0e-19 98.2 108 55.6
Actinidia14176 Actinidia chinensis HOM05D003593 ORTHO05D004064 9.1e-19 97.8 94 57.4
Psat1g089640 Pisum sativum HOM05D003593 ORTHO05D004064 2.0e-18 96.7 106 51.9
DCAR_007335 Daucus carota HOM05D003593 ORTHO05D002993 4.5e-18 95.5 131 47.3
Glyma.02G282202 Glycine max HOM05D003593 ORTHO05D004064 1.0e-17 94.4 74 70.3
Nitab4.5_0005797g0010 Nicotiana tabacum HOM05D003593 ORTHO05D004064 1.3e-17 94.0 134 44.8
Manes.16G049600 Manihot esculenta HOM05D003593 ORTHO05D004064 6.5e-17 91.7 129 44.2
AL1G62820 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 1.2e-15 87.4 83 60.2
vmacro03823 Vaccinium macrocarpon HOM05D003593 ORTHO05D004064 1.8e-14 83.6 219 32.0
MBI16_g09339_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 2.0e-13 80.1 63 66.7
Oeu048106.1 Olea europaea HOM05D003593 ORTHO05D004064 3.4e-13 79.3 53 75.5
Pp3c17_5110 Physcomitrium patens HOM05D003593 ORTHO05D004064 9.8e-13 77.8 104 47.1
SMO288G0003 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 9.8e-13 77.8 77 50.6
SMO352G0089 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 9.8e-13 77.8 77 50.6
C04p36780 Brassica napus HOM05D003593 ORTHO05D004064 1.3e-12 77.4 71 60.6
HPP92_006993 Vanilla planifolia HOM05D003593 ORTHO05D004064 4.8e-12 75.5 108 44.4
MBI16_g41745_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 1.1e-11 74.3 53 71.7
PSO170G1127 Papaver somniferum HOM05D003593 ORTHO05D004064 3.1e-11 72.8 91 51.6
arahy.Tifrunner.gnm1.ann1.0CTM64 Arachis hypogaea HOM05D003593 ORTHO05D004064 1.6e-10 70.5 101 50.5
Aqoxy5G03192 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 5.9e-10 68.6 65 64.6
Lsat_1_v5_gn_7_57621 Lactuca sativa HOM05D001776 ORTHO05D001771 5.9e-10 68.6 48 72.9
CBR_g26495 Chara braunii HOM05D003593 ORTHO05D004064 8.6e-09 64.7 125 33.6
Solyc02g062120.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 8.6e-09 64.7 46 71.7
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 9.5e-08 61.2 89 42.7
AagrBONN_evm.TU.Sc2ySwM_368.144 Anthoceros agrestis HOM05D003593 ORTHO05D004064 4.7e-07 58.9 49 61.2
Mapoly0001s0213 Marchantia polymorpha HOM05D003593 ORTHO05D004064 8.0e-07 58.2 154 30.5
Haze_22055 Corylus avellana HOM05D003593 ORTHO05D004064 2.3e-06 56.6 207 27.5


User provided reference genes

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