Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1238500 Malus domestica HOM05D007796 ORTHO05D009853 8.6e-34 146.4 71 100.0
MD13G1233500 Malus domestica HOM05D007796 ORTHO05D009853 6.1e-32 140.2 71 94.4
Prupe.1G064700 Prunus persica HOM05D007796 ORTHO05D009853 7.3e-25 116.7 71 85.9
FAN07G1080 Fragaria x ananassa HOM05D007796 ORTHO05D009853 3.5e-19 97.8 72 72.2
FvH4_4g06110 Fragaria vesca HOM05D007796 ORTHO05D009853 4.6e-19 97.4 72 72.2
FAN12G2913 Fragaria x ananassa HOM05D007796 ORTHO05D009853 4.6e-19 97.4 72 72.2
FAN17G0402 Fragaria x ananassa HOM05D007796 ORTHO05D009853 4.6e-19 97.4 72 72.2
THA.LOC104822455 Tarenaya hassleriana HOM05D007796 ORTHO05D009853 8.6e-18 93.2 71 54.9
FAN22G0383 Fragaria x ananassa HOM05D007796 ORTHO05D009853 1.1e-17 92.8 71 67.6
RcHm_v2.0_Chr4g0397691 Rosa chinensis HOM05D007796 ORTHO05D009853 1.1e-17 92.8 72 68.1
AL3G18920 Arabidopsis lyrata HOM05D007796 ORTHO05D009853 4.3e-17 90.9 71 60.6
CiPaw.13G057300 Carya illinoinensis HOM05D007796 ORTHO05D009853 4.3e-17 90.9 69 62.3
Thhalv10021850m.g Eutrema salsugineum HOM05D007796 ORTHO05D009853 5.6e-17 90.5 71 60.6
CARHR082260 Cardamine hirsuta HOM05D007796 ORTHO05D009853 7.3e-17 90.1 71 60.6
AT3G07568 Arabidopsis thaliana HOM05D007796 ORTHO05D009853 9.5e-17 89.7 71 59.2
Cfa010674 Carpinus fangiana HOM05D005998 ORTHO05D007664 9.5e-17 89.7 65 61.5
Carub.0003s0713 Capsella rubella HOM05D007796 ORTHO05D009853 1.2e-16 89.4 71 59.2
Haze_03600 Corylus avellana HOM05D007796 ORTHO05D009853 2.1e-16 88.6 54 70.4
Eucgr.H00678 Eucalyptus grandis HOM05D007796 ORTHO05D009853 2.8e-16 88.2 68 63.2
Aa31LG5G18120 Aethionema arabicum HOM05D007796 ORTHO05D009853 6.2e-16 87.0 68 61.8
PGR083G0658 Punica granatum HOM05D007796 ORTHO05D009853 6.2e-16 87.0 69 63.8
C05p59740 Brassica napus HOM05D007796 ORTHO05D009853 1.1e-15 86.3 68 57.4
BcaC05g29552 Brassica carinata HOM05D000328 ORTHO05D000191 1.4e-15 85.9 68 57.4
A05p40630 Brassica napus HOM05D007796 ORTHO05D009853 1.4e-15 85.9 69 56.5
BolC5t34628H Brassica oleracea HOM05D007796 ORTHO05D009853 1.4e-15 85.9 68 57.4
BraA05t22794Z Brassica rapa HOM05D007796 ORTHO05D009853 1.4e-15 85.9 69 56.5
Sp3g06500 Schrenkiella parvula HOM05D007796 ORTHO05D009853 1.8e-15 85.5 68 57.4
Ciclev10018341m.g Citrus clementina HOM05D007796 ORTHO05D009853 2.3e-15 85.1 57 68.4
Atru.chr6.3486 Acer truncatum HOM05D007796 ORTHO05D009853 3.1e-15 84.7 58 65.5
TPR.G5064 Trifolium pratense HOM05D007796 ORTHO05D009853 4.0e-15 84.3 70 57.1
TWI36G1414 Tripterygium wilfordii HOM05D007796 ORTHO05D009853 4.0e-15 84.3 71 54.9
Manes.12G058902 Manihot esculenta HOM05D007796 ORTHO05D009853 5.2e-15 84.0 69 60.9
Gohir.A07G088800 Gossypium hirsutum HOM05D007796 ORTHO05D009853 6.8e-15 83.6 69 56.5
Psat4g158920 Pisum sativum HOM05D007796 ORTHO05D009853 6.8e-15 83.6 70 57.1
Gohir.D07G093800 Gossypium hirsutum HOM05D007796 ORTHO05D009853 1.2e-14 82.8 69 56.5
Gorai.001G100500 Gossypium raimondii HOM05D007796 ORTHO05D009853 1.2e-14 82.8 69 56.5
Lj3g0021991 Lotus japonicus HOM05D007796 ORTHO05D009853 1.2e-14 82.8 71 59.2
Thecc.01G204800 Theobroma cacao HOM05D007796 ORTHO05D009853 1.2e-14 82.8 69 60.9
Medtr8g028085 Medicago truncatula HOM05D007796 ORTHO05D009853 3.4e-14 81.3 70 57.1
COL.COLO4_04515 Corchorus olitorius HOM05D007796 ORTHO05D009853 1.3e-13 79.3 69 59.4
Nn7g37568 Nelumbo nucifera HOM05D007796 ORTHO05D009853 6.4e-13 77.0 54 64.8
CANSAT35G1173 Cannabis sativa HOM05D007796 ORTHO05D009853 1.1e-12 76.3 54 63.0
Lalb_Chr17g0342271 Lupinus albus HOM05D007796 ORTHO05D009853 1.1e-12 76.3 62 59.7
Manes.13G057800 Manihot esculenta HOM05D007796 ORTHO05D009853 1.4e-12 75.9 69 55.1
Hma1.2p1_0487F.1_g163590 Hydrangea macrophylla HOM05D007796 ORTHO05D009853 1.9e-12 75.5 65 55.4
Ca_23572_v3 Cicer arietinum L. HOM05D007796 ORTHO05D009853 2.4e-12 75.1 56 60.7
Ca_23581_v3 Cicer arietinum L. HOM05D007796 ORTHO05D009853 2.4e-12 75.1 56 60.7
QL09p048026 Quercus lobata HOM05D007796 ORTHO05D009853 2.4e-12 75.1 68 58.8
PSO017G5834 Papaver somniferum HOM05D007796 ORTHO05D009853 3.2e-12 74.7 54 66.7
Potri.014G197400 Populus trichocarpa HOM05D007796 ORTHO05D009853 3.2e-12 74.7 71 52.1
arahy.Tifrunner.gnm1.ann1.M2QILT Arachis hypogaea HOM05D007796 ORTHO05D009853 4.1e-12 74.3 65 53.8
Actinidia27090 Actinidia chinensis HOM05D007796 ORTHO05D009853 9.2e-12 73.2 64 54.7
MELO3C012717.2 Cucumis melo HOM05D007796 ORTHO05D009853 1.6e-11 72.4 54 61.1
Lsat_1_v5_gn_2_38801 Lactuca sativa HOM05D007796 ORTHO05D009853 3.5e-11 71.2 59 59.3
CsaV3_7G027090 Cucumis sativus L. HOM05D007796 ORTHO05D009853 4.6e-11 70.9 57 61.4
vmacro00674 Vaccinium macrocarpon HOM05D007796 ORTHO05D009853 1.0e-10 69.7 69 47.8
CiPaw.14G044700 Carya illinoinensis HOM05D007796 ORTHO05D009853 3.9e-10 67.8 70 50.0
CSS0002213 Camellia sinensis var. sinensis HOM05D007796 ORTHO05D009853 5.1e-10 67.4 64 50.0
CSS0009025 Camellia sinensis var. sinensis HOM05D007796 ORTHO05D009853 5.1e-10 67.4 64 50.0
Cpa.g.sc8.20 Carica papaya HOM05D007796 ORTHO05D009853 8.6e-10 66.6 54 57.4
MBI07_g07943_MAGBIO Magnolia biondii HOM05D007796 ORTHO05D009853 1.1e-09 66.2 75 48.0
MSTRG.9748 Avicennia marina HOM05D007796 ORTHO05D009853 2.5e-09 65.1 61 47.5
Nitab4.5_0012444g0010 Nicotiana tabacum HOM05D007796 ORTHO05D009853 4.3e-09 64.3 71 45.1
Oeu022686.1 Olea europaea HOM05D007796 ORTHO05D009853 4.3e-09 64.3 68 45.6
Migut.G01293 Erythranthe guttata HOM05D007796 ORTHO05D009853 5.6e-09 63.9 62 48.4
SalBow2G2954 Salvia bowleyana HOM05D007796 ORTHO05D009853 5.6e-09 63.9 69 44.9
Nitab4.5_0000242g0120 Nicotiana tabacum HOM05D007796 ORTHO05D009853 7.3e-09 63.5 62 48.4
Nitab4.5_0001521g0060 Nicotiana tabacum HOM05D007796 ORTHO05D009853 7.3e-09 63.5 71 45.1
Rhsim09G0019700 Rhododendron simsii HOM05D007796 ORTHO05D009853 7.3e-09 63.5 68 41.2
Rhsim09G0019400 Rhododendron simsii HOM05D007796 ORTHO05D009853 1.6e-08 62.4 55 47.3
Sed0024779 Sechium edule HOM05D007796 ORTHO05D009853 4.7e-08 60.8 57 54.4
Peaxi162Scf00075g01546 Petunia axillaris HOM05D007796 ORTHO05D009853 8.1e-08 60.1 64 43.8
GSVIVG01004106001 Vitis vinifera HOM05D007796 ORTHO05D009853 8.1e-08 60.1 57 50.9
HanXRQChr12g0382011 Helianthus annuus HOM05D007796 ORTHO05D009853 1.1e-07 59.7 50 52.0
Rhsim09G0018700 Rhododendron simsii HOM05D007796 ORTHO05D009853 1.4e-07 59.3 55 45.5
Sopen08g004900 Solanum pennellii HOM05D007796 ORTHO05D009853 1.4e-07 59.3 62 43.5
ATR0743G114 Amborella trichopoda HOM05D007796 ORTHO05D009853 3.1e-07 58.2 54 50.0
EL10Ac3g06021 Beta vulgaris HOM05D007796 ORTHO05D009853 4.0e-07 57.8 54 48.1
Glyma.07G059400 Glycine max HOM05D007796 ORTHO05D009853 4.0e-07 57.8 61 44.3
unitig_0.g2392 Utricularia gibba HOM05D007796 ORTHO05D009853 1.2e-06 56.2 60 40.0
AUR62023828 Chenopodium quinoa HOM05D007796 ORTHO05D009853 2.0e-06 55.5 67 43.3
DCAR_005469 Daucus carota HOM05D007796 ORTHO05D009853 2.0e-06 55.5 54 48.1
AUR62002357 Chenopodium quinoa HOM05D007796 ORTHO05D009853 3.4e-06 54.7 67 43.3
SHI10202 Sapria himalayana HOM05D007796 ORTHO05D009853 9.9e-06 53.1 39 61.5


User provided reference genes

Program Settings