Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 1.2e-196 689.9 403 100.0
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 1.7e-139 500.0 359 83.0
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 2.3e-115 419.9 361 72.9
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 9.6e-114 414.5 275 90.2
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 6.2e-113 411.8 361 72.0
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 6.2e-113 411.8 361 72.0
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 4.0e-112 409.1 361 69.0
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 6.9e-112 408.3 361 68.4
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 2.0e-111 406.8 361 68.1
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 5.8e-111 405.2 358 70.9
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 6.0e-108 395.2 358 65.1
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 3.0e-107 392.9 358 65.4
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 7.4e-106 388.3 358 65.1
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.8e-105 386.3 360 66.1
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 6.9e-104 381.7 356 68.3
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 2.0e-103 380.2 360 62.8
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 3.4e-103 379.4 361 67.9
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 1.1e-101 374.4 359 62.4
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 1.9e-101 373.6 358 65.4
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 1.9e-101 373.6 358 65.4
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 2.5e-98 363.2 361 61.5
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 9.6e-98 361.3 358 62.0
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 1.4e-96 357.5 360 60.8
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 1.2e-95 354.4 359 62.1
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 2.0e-95 353.6 362 58.8
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 2.0e-95 353.6 359 60.4
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 3.4e-95 352.8 347 64.6
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.3e-94 350.9 352 64.5
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 1.7e-94 350.5 361 59.6
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 1.7e-94 350.5 361 59.6
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 2.9e-94 349.7 359 59.9
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 4.9e-94 349.0 359 61.6
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 8.4e-94 348.2 361 59.3
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 9.3e-93 344.7 357 61.9
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 1.6e-92 344.0 364 61.0
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 3.5e-92 342.8 366 60.7
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 3.9e-91 339.3 361 57.9
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 8.7e-91 338.2 360 61.4
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 8.7e-91 338.2 360 61.4
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 2.8e-89 333.2 366 58.2
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 3.7e-89 332.8 346 63.9
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 4.8e-89 332.4 355 61.4
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 4.1e-88 329.3 358 60.1
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 5.3e-88 328.9 356 55.9
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 1.2e-87 327.8 362 56.9
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.3e-86 324.3 358 62.3
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 3.8e-86 322.8 360 56.9
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 5.0e-86 322.4 359 57.7
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 8.5e-86 321.6 369 54.7
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 1.9e-85 320.5 362 57.5
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 7.2e-85 318.5 345 60.6
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 9.3e-85 318.2 359 58.8
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 2.3e-83 313.5 363 54.5
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 8.7e-83 311.6 368 54.1
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 1.5e-82 310.8 354 54.5
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 2.5e-82 310.1 360 54.2
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 4.3e-82 309.3 360 57.5
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 8.2e-81 305.1 361 53.7
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 1.8e-80 303.9 346 55.8
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 2.6e-79 300.1 376 51.1
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 3.4e-79 299.7 357 53.8
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 3.4e-79 299.7 357 53.8
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 1.0e-78 298.1 370 52.2
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 1.7e-78 297.4 341 54.3
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 2.9e-78 296.6 378 51.6
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 1.4e-77 294.3 345 53.9
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 1.4e-77 294.3 345 53.9
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 1.4e-77 294.3 379 51.2
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 2.5e-77 293.5 363 52.3
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 3.2e-77 293.1 364 52.5
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 3.2e-77 293.1 356 54.5
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 4.2e-77 292.7 352 54.3
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 5.5e-77 292.4 342 58.2
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 1.6e-76 290.8 344 55.8
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 2.7e-76 290.0 335 52.2
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 1.4e-75 287.7 364 51.1
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 1.4e-75 287.7 358 51.4
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 8.8e-75 285.0 359 56.8
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 2.6e-74 283.5 393 48.9
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 2.6e-74 283.5 359 53.8
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 2.2e-70 270.4 378 50.0
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 8.5e-70 268.5 357 52.4
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 1.6e-68 264.2 341 51.3
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 2.7e-68 263.5 334 50.6
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 8.0e-68 261.9 367 52.0
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 1.3e-65 254.6 334 49.7
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 1.3e-65 254.6 376 48.4
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 4.1e-64 249.6 357 47.9
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 2.5e-61 240.4 357 46.8
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 2.5e-61 240.4 366 46.4
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 2.5e-61 240.4 370 44.3
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 2.7e-60 236.9 374 48.4
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 2.7e-60 236.9 359 46.2
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 2.3e-59 233.8 375 48.0
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 1.2e-58 231.5 347 47.0
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 5.7e-58 229.2 374 46.5
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 7.5e-58 228.8 361 45.4
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 9.7e-58 228.4 370 48.1
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 9.7e-58 228.4 374 45.7
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 1.3e-57 228.0 353 49.6
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 2.2e-57 227.3 375 45.3
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 8.2e-57 225.3 350 49.7
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 2.4e-56 223.8 356 44.7
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 7.0e-56 222.2 349 44.4
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 2.7e-55 220.3 346 44.5
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 1.0e-54 218.4 368 41.8
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 1.7e-54 217.6 341 46.6
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 3.8e-54 216.5 350 43.4
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 1.1e-53 214.9 314 46.2
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 3.0e-51 206.8 371 45.3
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 4.4e-50 203.0 350 46.3
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 4.4e-50 203.0 350 46.3
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 7.5e-50 202.2 335 43.6
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 4.1e-48 196.4 325 40.3
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 3.6e-44 183.3 356 38.8
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 1.8e-43 181.0 276 50.4
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 9.8e-42 175.3 363 38.3
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 5.4e-40 169.5 352 38.9
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 1.2e-39 168.3 355 38.6
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 8.6e-38 162.2 375 39.5
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 1.9e-37 161.0 245 49.0
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 3.3e-37 160.2 309 38.2
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 2.8e-36 157.1 375 34.4
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 1.0e-35 155.2 338 34.6
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 2.9e-33 147.1 349 35.0
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 4.1e-32 143.3 143 54.5
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 5.4e-32 142.9 322 34.8
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.6e-31 141.4 311 39.2
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 1.6e-31 141.4 323 38.1
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.3e-30 138.3 108 69.4
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 6.2e-28 129.4 329 36.2
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 6.2e-28 129.4 366 34.2
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 4.4e-26 123.2 107 61.7
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 2.2e-25 120.9 196 42.9
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 2.2e-25 120.9 208 52.4
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 1.1e-21 108.6 182 46.7
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 3.3e-21 107.1 453 29.4
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 3.6e-20 103.6 254 37.8
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 1.1e-16 92.0 89 53.9
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 3.2e-16 90.5 350 32.6
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 7.1e-16 89.4 115 51.3
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 7.8e-15 85.9 90 48.9
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 1.3e-14 85.1 166 38.6
RcHm_v2.0_Chr3g0493171 Rosa chinensis HOM05D004638 ORTHO05D005443 2.1e-12 77.8 61 67.2
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 4.7e-12 76.6 157 38.9
RcHm_v2.0_Chr5g0061161 Rosa chinensis HOM05D004638 ORTHO05D005443 8.1e-12 75.9 61 65.6
Sabra08G0132300 Salix brachista HOM05D004638 ORTHO05D005443 8.9e-11 72.4 102 45.1
Medtr2g079040 Medicago truncatula HOM05D004638 ORTHO05D005443 3.2e-08 63.9 50 66.0
Nitab4.5_0000047g0220 Nicotiana tabacum HOM05D004638 ORTHO05D005443 6.0e-07 59.7 90 40.0
Lsat_1_v5_gn_9_30260 Lactuca sativa HOM05D004638 ORTHO05D005443 1.3e-06 58.5 53 58.5


User provided reference genes

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