Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 1.2e-58 229.6 114 100.0
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 5.4e-46 187.6 110 87.3
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 1.7e-36 156.0 112 76.8
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 9.5e-35 150.2 114 69.3
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.8e-34 148.7 114 68.4
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 6.2e-34 147.5 117 68.4
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 8.1e-34 147.1 119 68.1
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 1.2e-32 143.3 119 66.4
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 4.9e-23 111.3 119 58.8
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 3.0e-20 102.1 103 54.4
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 1.1e-19 100.1 99 60.6
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 1.5e-19 99.8 103 54.4
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 5.6e-19 97.8 110 59.1
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 5.6e-19 97.8 104 55.8
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 7.3e-19 97.4 107 53.3
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 9.6e-19 97.1 103 52.4
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 3.6e-18 95.1 105 53.3
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 4.8e-18 94.7 107 49.5
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 4.8e-18 94.7 103 54.4
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 3.1e-17 92.0 111 53.2
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 3.1e-17 92.0 113 53.1
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 5.3e-17 91.3 112 52.7
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 2.0e-16 89.4 111 56.8
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 2.0e-16 89.4 105 50.5
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 2.6e-16 89.0 103 48.5
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 3.4e-16 88.6 105 54.3
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 4.5e-16 88.2 105 49.5
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 4.5e-16 88.2 105 49.5
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 5.8e-16 87.8 114 50.0
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 5.8e-16 87.8 108 50.9
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 5.8e-16 87.8 119 47.1
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 9.9e-16 87.0 118 50.8
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 9.9e-16 87.0 118 50.8
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 1.3e-15 86.7 108 51.9
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 1.7e-15 86.3 106 49.1
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.7e-15 86.3 119 47.1
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 2.9e-15 85.5 99 52.5
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 3.8e-15 85.1 118 49.2
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 4.9e-15 84.7 101 50.5
FAN26G1611 Fragaria x ananassa HOM05D003940 ORTHO05D004461 4.9e-15 84.7 84 57.1
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 6.4e-15 84.3 106 48.1
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 6.4e-15 84.3 106 49.1
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 6.4e-15 84.3 108 49.1
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 6.4e-15 84.3 112 49.1
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 8.4e-15 84.0 110 50.0
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 8.4e-15 84.0 104 49.0
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.1e-14 83.6 104 49.0
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.1e-14 83.6 104 49.0
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 1.1e-14 83.6 113 45.1
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 1.4e-14 83.2 113 44.2
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.9e-14 82.8 113 46.9
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 2.4e-14 82.4 112 50.0
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 3.2e-14 82.0 78 55.1
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 5.4e-14 81.3 107 50.5
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 5.4e-14 81.3 112 44.6
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 5.4e-14 81.3 112 44.6
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.4e-14 81.3 118 49.2
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 5.4e-14 81.3 115 47.8
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 5.4e-14 81.3 103 49.5
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 9.3e-14 80.5 106 47.2
FAN17G0281 Fragaria x ananassa HOM05D003940 ORTHO05D004461 9.3e-14 80.5 89 53.9
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 1.2e-13 80.1 98 52.0
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.6e-13 79.7 104 50.0
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 2.1e-13 79.3 117 48.7
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 2.1e-13 79.3 110 48.2
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 2.7e-13 79.0 107 47.7
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 2.7e-13 79.0 113 44.2
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 3.5e-13 78.6 110 45.5
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.5e-13 78.6 105 48.6
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 6.0e-13 77.8 102 48.0
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 7.9e-13 77.4 107 47.7
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 7.9e-13 77.4 105 47.6
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 7.9e-13 77.4 102 50.0
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.0e-12 77.0 105 46.7
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 1.8e-12 76.3 113 45.1
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.8e-12 76.3 105 46.7
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.8e-12 76.3 110 49.1
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.8e-12 76.3 110 49.1
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 2.3e-12 75.9 110 45.5
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 2.3e-12 75.9 108 47.2
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 2.3e-12 75.9 110 41.8
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 3.0e-12 75.5 106 45.3
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 3.0e-12 75.5 110 45.5
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 3.0e-12 75.5 106 46.2
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 3.0e-12 75.5 111 46.8
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 3.0e-12 75.5 103 48.5
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 3.0e-12 75.5 107 43.0
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 3.9e-12 75.1 110 44.5
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 3.9e-12 75.1 112 42.9
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 3.9e-12 75.1 106 47.2
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 3.9e-12 75.1 106 45.3
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 3.9e-12 75.1 106 43.4
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 5.1e-12 74.7 106 47.2
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 5.1e-12 74.7 117 48.7
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 6.7e-12 74.3 107 44.9
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 6.7e-12 74.3 106 46.2
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 6.7e-12 74.3 110 40.9
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 8.7e-12 73.9 100 48.0
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 1.1e-11 73.6 106 47.2
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 1.1e-11 73.6 106 46.2
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.1e-11 73.6 90 50.0
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.5e-11 73.2 107 44.9
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 1.9e-11 72.8 115 47.8
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 3.3e-11 72.0 115 44.3
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 3.3e-11 72.0 99 45.5
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 4.3e-11 71.6 106 46.2
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 5.6e-11 71.2 112 43.8
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 5.6e-11 71.2 118 45.8
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 5.6e-11 71.2 109 45.0
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 7.4e-11 70.9 104 44.2
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.4e-11 70.9 109 45.0
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 9.6e-11 70.5 113 41.6
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 9.6e-11 70.5 108 43.5
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 9.6e-11 70.5 111 42.3
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 9.6e-11 70.5 99 46.5
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 1.3e-10 70.1 110 40.9
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 1.3e-10 70.1 110 40.9
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 1.3e-10 70.1 110 40.9
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.3e-10 70.1 100 45.0
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.6e-10 69.7 111 45.0
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.6e-10 69.7 100 41.0
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 2.1e-10 69.3 122 45.9
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 2.1e-10 69.3 113 43.4
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 2.1e-10 69.3 103 46.6
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 2.1e-10 69.3 107 44.9
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 3.6e-10 68.6 103 42.7
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 3.6e-10 68.6 98 46.9
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 3.6e-10 68.6 113 43.4
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 4.8e-10 68.2 115 44.3
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 6.2e-10 67.8 107 43.9
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 6.2e-10 67.8 100 47.0
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 6.2e-10 67.8 110 44.5
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 8.1e-10 67.4 119 45.4
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 8.1e-10 67.4 124 42.7
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.4e-09 66.6 112 38.4
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 1.4e-09 66.6 115 37.4
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 2.4e-09 65.9 98 45.9
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 3.1e-09 65.5 118 41.5
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 4.0e-09 65.1 111 40.5
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 6.9e-09 64.3 95 44.2
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 9.0e-09 63.9 111 43.2
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 9.0e-09 63.9 98 44.9
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.5e-08 63.2 106 45.3
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 1.5e-08 63.2 96 40.6
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.5e-08 63.2 98 46.9
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 2.0e-08 62.8 98 44.9
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 2.0e-08 62.8 98 44.9
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 2.0e-08 62.8 98 44.9
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 2.0e-08 62.8 109 38.5
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 2.0e-08 62.8 97 45.4
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 2.0e-08 62.8 114 41.2
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 2.0e-08 62.8 112 41.1
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 2.6e-08 62.4 97 45.4
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 2.6e-08 62.4 98 44.9
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 4.5e-08 61.6 106 44.3
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 5.8e-08 61.2 111 40.5
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 9.9e-08 60.5 103 40.8
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 9.9e-08 60.5 112 41.1
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 1.3e-07 60.1 95 46.3
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 1.3e-07 60.1 95 46.3
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 2.2e-07 59.3 96 41.7
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 2.9e-07 58.9 106 40.6
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 6.4e-07 57.8 112 38.4
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 6.4e-07 57.8 113 40.7
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 1.1e-06 57.0 103 39.8
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 2.4e-06 55.8 117 40.2
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 3.2e-06 55.5 116 37.9
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 4.2e-06 55.1 111 39.6


User provided reference genes

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