Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 2.8e-77 292.0 156 100.0
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 9.6e-70 266.9 148 95.9
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 1.3e-61 240.0 145 86.9
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.6e-61 238.4 148 87.2
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 4.8e-61 238.0 148 87.8
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 4.8e-61 238.0 148 87.8
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 6.2e-61 237.7 148 87.2
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 8.1e-61 237.3 151 85.4
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 5.3e-60 234.6 148 86.5
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 5.3e-60 234.6 148 86.5
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 5.3e-60 234.6 148 85.8
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 1.2e-59 233.4 147 83.7
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.5e-59 233.0 148 84.5
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 7.6e-59 230.7 146 85.6
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 9.9e-59 230.3 145 83.4
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 6.4e-58 227.6 153 80.4
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 6.4e-58 227.6 153 80.4
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 8.4e-58 227.3 145 82.1
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 8.4e-58 227.3 145 82.8
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 8.4e-58 227.3 146 81.5
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 1.1e-57 226.9 144 84.7
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.4e-57 226.5 145 82.1
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 2.4e-57 225.7 145 84.8
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 3.2e-57 225.3 144 84.0
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 3.2e-57 225.3 145 84.1
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 5.4e-57 224.6 145 83.4
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 5.4e-57 224.6 143 81.8
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 5.4e-57 224.6 147 82.3
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 7.1e-57 224.2 138 86.2
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 1.2e-56 223.4 145 83.4
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 1.2e-56 223.4 145 83.4
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 1.2e-56 223.4 145 81.4
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 1.6e-56 223.0 145 81.4
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 1.6e-56 223.0 145 82.1
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 1.6e-56 223.0 140 83.6
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 2.1e-56 222.6 143 79.7
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 2.1e-56 222.6 148 80.4
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 2.1e-56 222.6 145 81.4
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 2.1e-56 222.6 145 81.4
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 2.1e-56 222.6 143 79.7
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 2.1e-56 222.6 152 78.3
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 2.1e-56 222.6 141 83.7
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 3.5e-56 221.9 143 81.8
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 4.6e-56 221.5 146 82.9
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 6.0e-56 221.1 147 81.0
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 7.9e-56 220.7 146 80.1
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 7.9e-56 220.7 146 80.1
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 1.0e-55 220.3 149 77.9
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 1.0e-55 220.3 140 82.1
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 1.0e-55 220.3 145 82.1
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.3e-55 219.9 146 79.5
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 1.3e-55 219.9 150 80.0
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 1.8e-55 219.5 148 80.4
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 1.8e-55 219.5 150 80.0
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 1.8e-55 219.5 138 84.1
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 2.3e-55 219.2 138 83.3
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 2.3e-55 219.2 145 80.7
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 2.3e-55 219.2 145 80.7
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 3.0e-55 218.8 145 80.0
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 3.9e-55 218.4 138 82.6
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 5.1e-55 218.0 145 80.0
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 1.1e-54 216.9 141 83.0
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 1.5e-54 216.5 142 77.5
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 1.5e-54 216.5 149 75.8
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 1.5e-54 216.5 143 80.4
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 1.5e-54 216.5 138 84.8
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.9e-54 216.1 145 80.7
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 1.9e-54 216.1 138 81.9
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 2.5e-54 215.7 150 81.3
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 2.5e-54 215.7 145 80.7
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 2.5e-54 215.7 145 80.7
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 2.5e-54 215.7 139 81.3
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 3.3e-54 215.3 139 80.6
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 3.3e-54 215.3 143 80.4
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 4.3e-54 214.9 142 77.5
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 4.3e-54 214.9 142 80.3
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 5.6e-54 214.5 138 84.1
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 5.6e-54 214.5 145 81.4
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 5.6e-54 214.5 143 76.2
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 7.4e-54 214.2 145 80.7
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 2.8e-53 212.2 145 77.2
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 2.8e-53 212.2 143 74.1
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 3.7e-53 211.8 143 79.0
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 3.7e-53 211.8 142 81.0
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 4.8e-53 211.5 140 77.9
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 4.8e-53 211.5 140 77.1
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 6.2e-53 211.1 142 78.9
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 8.1e-53 210.7 137 78.8
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.1e-52 210.3 135 81.5
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.1e-52 210.3 135 81.5
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 1.1e-52 210.3 134 80.6
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 1.4e-52 209.9 135 82.2
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 4.0e-52 208.4 138 81.2
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 5.3e-52 208.0 140 78.6
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 9.0e-52 207.2 144 77.8
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 1.2e-51 206.8 145 73.8
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 1.5e-51 206.5 145 73.8
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 3.4e-51 205.3 142 76.8
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 9.9e-51 203.8 141 77.3
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 9.9e-51 203.8 141 77.3
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 2.2e-50 202.6 145 74.5
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 6.4e-50 201.1 123 88.6
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 8.4e-50 200.7 144 71.5
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 2.4e-49 199.1 149 69.1
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 1.0e-47 193.7 147 70.7
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.0e-47 193.7 145 70.3
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 5.1e-47 191.4 116 84.5
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 1.9e-46 189.5 145 69.7
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 1.3e-45 186.8 145 70.3
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 8.2e-45 184.1 119 80.7
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 1.4e-44 183.3 148 66.2
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 4.0e-44 181.8 148 66.2
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 9.0e-44 180.6 134 69.4
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 1.2e-43 180.3 138 67.4
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 2.0e-43 179.5 138 67.4
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 4.5e-43 178.3 138 65.2
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 5.8e-43 177.9 139 68.3
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 5.8e-43 177.9 139 68.3
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 5.8e-43 177.9 138 66.7
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 5.8e-43 177.9 139 68.3
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 7.6e-43 177.6 146 65.1
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 1.0e-42 177.2 139 67.6
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 1.3e-42 176.8 148 66.9
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 1.3e-42 176.8 148 66.9
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 1.7e-42 176.4 142 67.6
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 2.2e-42 176.0 140 67.9
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 2.9e-42 175.6 139 66.2
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 3.8e-42 175.3 134 67.9
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 8.4e-42 174.1 141 63.8
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 5.5e-41 171.4 148 60.8
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 1.3e-39 166.8 142 65.5
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 1.3e-39 166.8 142 65.5
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 5.1e-39 164.9 143 60.8
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 3.7e-37 158.7 148 60.1
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 1.5e-35 153.3 140 57.1
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 7.2e-33 144.4 133 60.2
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 7.2e-33 144.4 132 59.1
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 9.4e-33 144.1 118 61.0
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 4.1e-28 128.6 142 55.6
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 7.2e-25 117.9 105 63.8
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 3.0e-23 112.5 88 67.0
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 9.7e-22 107.5 135 39.3
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 3.1e-20 102.4 99 59.6
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 1.2e-19 100.5 136 41.9
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 3.3e-14 82.4 87 51.7
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 4.5e-11 72.0 46 78.3


User provided reference genes

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