Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 8.4e-227 790.0 402 100.0
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 5.3e-205 717.6 402 91.3
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 2.7e-193 678.7 402 85.8
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 1.2e-161 573.5 401 72.6
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 6.3e-158 561.2 402 74.1
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 7.2e-154 547.7 402 69.9
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 7.0e-149 531.2 398 70.9
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 7.7e-148 527.7 411 67.4
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 2.5e-146 522.7 412 66.5
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.3e-146 522.3 408 69.4
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 2.8e-145 519.2 398 69.8
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 3.7e-142 508.8 399 65.9
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 3.7e-142 508.8 398 66.3
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 6.4e-142 508.1 401 66.6
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 9.2e-141 504.2 424 65.8
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 5.0e-139 498.4 407 63.6
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 1.5e-138 496.9 411 63.3
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 1.9e-138 496.5 398 64.6
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 1.6e-137 493.4 405 61.2
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 3.6e-137 492.3 406 61.8
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 8.9e-136 487.6 399 62.9
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 5.8e-135 485.0 328 74.1
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 7.5e-135 484.6 400 60.8
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 1.3e-134 483.8 397 62.5
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 1.7e-134 483.4 398 63.1
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 2.9e-134 482.6 348 68.7
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 3.7e-134 482.3 399 63.7
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 4.9e-134 481.9 464 58.8
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 4.1e-133 478.8 400 63.5
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 7.0e-133 478.0 399 63.2
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 7.0e-133 478.0 349 69.1
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 3.5e-132 475.7 321 72.6
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 3.9e-131 472.2 398 62.3
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 5.0e-131 471.9 318 71.4
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 1.5e-130 470.3 396 60.9
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 1.9e-130 469.9 400 58.5
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 2.5e-130 469.5 323 73.1
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 4.7e-129 465.3 318 71.7
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 8.1e-129 464.5 399 60.9
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 1.8e-128 463.4 399 60.7
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 3.1e-128 462.6 390 62.1
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 5.2e-128 461.8 371 63.1
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 1.2e-127 460.7 399 58.1
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 1.5e-127 460.3 403 60.3
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 1.5e-127 460.3 409 57.9
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 4.4e-127 458.8 400 57.8
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 5.8e-127 458.4 321 69.8
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 9.8e-127 457.6 326 66.6
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 2.9e-126 456.1 399 58.6
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 3.7e-126 455.7 400 57.2
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 6.4e-126 454.9 335 65.4
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 6.4e-126 454.9 409 56.7
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 1.1e-125 454.1 384 60.4
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 1.1e-125 454.1 402 60.2
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 1.1e-125 454.1 409 57.5
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 4.1e-125 452.2 404 57.7
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 5.4e-125 451.8 403 56.6
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 7.1e-125 451.4 399 57.4
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 7.1e-125 451.4 399 57.4
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 9.2e-125 451.1 399 57.6
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 9.2e-125 451.1 399 59.9
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 7.8e-124 448.0 399 57.1
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 7.8e-124 448.0 403 56.8
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 1.0e-123 447.6 405 56.3
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 1.7e-123 446.8 409 56.7
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 5.1e-123 445.3 398 57.0
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 6.6e-123 444.9 321 65.7
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 1.5e-122 443.7 337 68.2
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 1.9e-122 443.4 399 56.6
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 2.5e-122 443.0 405 55.8
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 2.8e-121 439.5 301 71.1
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 4.7e-121 438.7 305 68.2
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.4e-120 437.2 399 56.1
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 2.3e-120 436.4 401 55.9
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 3.1e-120 436.0 325 66.2
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 4.4e-119 432.2 331 66.2
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 7.6e-119 431.4 404 55.9
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 1.3e-118 430.6 319 64.9
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 2.2e-118 429.9 319 65.8
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 4.9e-118 428.7 341 65.4
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 1.9e-117 426.8 409 55.7
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 1.7e-115 420.2 395 58.2
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 3.9e-115 419.1 305 65.6
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 1.5e-114 417.2 326 62.3
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 2.5e-114 416.4 395 56.7
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 7.3e-114 414.8 341 59.8
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 8.1e-113 411.4 317 61.8
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 6.9e-112 408.3 397 53.1
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 1.2e-111 407.5 400 52.0
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 5.8e-111 405.2 318 66.4
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 1.9e-109 400.2 393 51.7
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 5.4e-109 398.7 390 54.1
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 7.1e-109 398.3 392 54.1
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 4.6e-108 395.6 349 57.9
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 3.3e-106 389.4 388 52.8
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 2.8e-105 386.3 315 59.4
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 4.8e-105 385.6 325 59.4
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 3.1e-104 382.9 318 59.1
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 6.9e-104 381.7 403 50.9
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 1.7e-102 377.1 404 51.0
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 7.9e-100 368.2 410 51.5
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 1.1e-98 364.4 319 58.9
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 1.9e-98 363.6 331 53.5
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 4.9e-94 349.0 280 65.7
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 2.5e-90 336.7 284 60.2
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 4.3e-90 335.9 339 53.1
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 1.8e-88 330.5 304 56.2
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 3.1e-88 329.7 307 55.4
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 5.8e-87 325.5 230 70.0
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 3.0e-83 313.2 364 49.2
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 3.3e-82 309.7 278 58.6
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 4.1e-80 302.8 278 55.4
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 3.8e-78 296.2 402 45.8
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 1.4e-69 267.7 255 56.9
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 6.3e-65 252.3 283 52.3
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 2.2e-57 227.3 265 46.4
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.9e-45 187.6 133 70.7
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 6.8e-43 179.1 124 69.4
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 9.8e-42 175.3 255 42.4
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 1.2e-39 168.3 181 45.3
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 4.7e-36 156.4 122 63.9
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 3.4e-34 150.2 317 29.3
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 4.4e-34 149.8 313 30.0
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 1.1e-29 135.2 76 81.6
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 3.0e-27 127.1 102 68.6
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 2.6e-26 124.0 150 41.3
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 5.7e-26 122.9 213 36.6
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 4.1e-24 116.7 223 37.7
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.2e-23 115.2 68 77.9
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 4.6e-23 113.2 90 65.6
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 1.6e-20 104.8 110 49.1
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 2.1e-20 104.4 91 59.3
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 2.1e-20 104.4 313 25.6
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 2.0e-18 97.8 249 26.5
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 5.4e-16 89.7 82 57.3
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 9.2e-16 89.0 69 68.1
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 2.2e-09 67.8 404 23.3
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 4.9e-09 66.6 40 65.0
Hund28065 Selenicereus undatus HOM05D000003 ORTHO05D000006 2.3e-06 57.8 121 35.5
Hund28074 Selenicereus undatus HOM05D000003 ORTHO05D000006 2.3e-06 57.8 121 35.5
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 5.1e-06 56.6 59 52.5


User provided reference genes

Program Settings