Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1146600 Malus domestica HOM05D006846 ORTHO05D008473 5.8e-77 290.8 145 100.0
MD13G1143600 Malus domestica HOM05D006846 ORTHO05D008473 2.2e-52 209.1 160 70.6
Prupe.1G108100 Prunus persica HOM05D006846 ORTHO05D008473 2.4e-51 205.7 160 68.8
RcHm_v2.0_Chr4g0426881 Rosa chinensis HOM05D006846 ORTHO05D008473 7.1e-43 177.6 163 61.3
Cfa015953 Carpinus fangiana HOM05D006846 ORTHO05D008473 3.0e-41 172.2 155 58.7
FAN07G1325 Fragaria x ananassa HOM05D006846 ORTHO05D008473 5.6e-40 167.9 163 60.7
FvH4_4g21260 Fragaria vesca HOM05D006846 ORTHO05D008473 2.1e-39 166.0 163 60.1
PSO339G5299 Papaver somniferum HOM05D006846 ORTHO05D008473 2.6e-37 159.1 142 58.5
QL06p041421 Quercus lobata HOM05D006846 ORTHO05D008473 1.7e-36 156.4 160 53.1
GSVIVG01017604001 Vitis vinifera HOM05D006846 ORTHO05D008473 2.9e-36 155.6 134 64.9
GSVIVG01017661001 Vitis vinifera HOM05D006846 ORTHO05D008473 2.9e-36 155.6 134 64.9
FAN12G0803 Fragaria x ananassa HOM05D006846 ORTHO05D008473 4.9e-36 154.8 188 52.1
Eucgr.H04110 Eucalyptus grandis HOM05D006846 ORTHO05D008473 6.4e-36 154.5 162 55.6
Lj6A699T67 Lonicera japonica HOM05D006846 ORTHO05D008473 1.9e-35 152.9 153 54.9
PSO384G1587 Papaver somniferum HOM05D006846 ORTHO05D008473 9.3e-35 150.6 140 56.4
PGR004G1594 Punica granatum HOM05D006846 ORTHO05D008473 1.6e-34 149.8 147 54.4
PGR033G0007 Punica granatum HOM05D006846 ORTHO05D008473 1.6e-34 149.8 147 54.4
MELO3C003207.2 Cucumis melo HOM05D006846 ORTHO05D008473 2.7e-34 149.1 143 55.9
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 4.6e-34 148.3 158 51.9
Hma1.2p1_0013F.1_g007970 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 1.0e-33 147.1 116 65.5
Thecc.04G310600 Theobroma cacao HOM05D006846 ORTHO05D008473 1.0e-33 147.1 123 62.6
CiPaw.01G161800 Carya illinoinensis HOM05D006846 ORTHO05D008473 1.3e-33 146.7 167 49.1
Migut.H02019 Erythranthe guttata HOM05D006846 ORTHO05D008473 3.0e-33 145.6 121 60.3
Rhsim04G0247300 Rhododendron simsii HOM05D006846 ORTHO05D008473 1.1e-32 143.7 179 47.5
MSTRG.14213 Avicennia marina HOM05D006846 ORTHO05D008473 1.5e-32 143.3 116 61.2
Sed0003831 Sechium edule HOM05D006846 ORTHO05D008473 2.5e-32 142.5 144 52.8
Nitab4.5_0007368g0030 Nicotiana tabacum HOM05D006846 ORTHO05D008473 3.3e-32 142.1 155 50.3
CsaV3_4G025810 Cucumis sativus L. HOM05D006846 ORTHO05D008473 4.3e-32 141.7 142 53.5
Nitab4.5_0007474g0050 Nicotiana tabacum HOM05D006846 ORTHO05D008473 4.3e-32 141.7 155 49.7
Manes.03G210800 Manihot esculenta HOM05D006846 ORTHO05D008473 7.4e-32 141.0 144 53.5
Duzib212G0339 Durio zibethinus HOM05D006846 ORTHO05D008473 9.6e-32 140.6 143 56.6
SGA_v2.0_scaffold127G34033 Striga asiatica HOM05D006846 ORTHO05D008473 3.7e-31 138.7 118 58.5
Potri.008G099700 Populus trichocarpa HOM05D006846 ORTHO05D008473 8.1e-31 137.5 126 56.3
Gohir.D09G242700 Gossypium hirsutum HOM05D006846 ORTHO05D008473 1.1e-30 137.1 153 50.3
Gorai.006G266400 Gossypium raimondii HOM05D006846 ORTHO05D008473 1.1e-30 137.1 153 50.3
Sabra08G0075400 Salix brachista HOM05D006846 ORTHO05D008473 1.1e-30 137.1 134 55.2
Hund16859 Selenicereus undatus HOM05D006846 ORTHO05D008473 1.1e-30 137.1 121 57.0
Solyc06g053470.3 Solanum lycopersicum HOM05D006846 ORTHO05D008473 1.1e-30 137.1 126 56.3
Sopen06g018550 Solanum pennellii HOM05D006846 ORTHO05D008473 1.1e-30 137.1 126 56.3
CANSAT01G2167 Cannabis sativa HOM05D006846 ORTHO05D008473 3.1e-30 135.6 153 52.3
Lj6g0016026 Lotus japonicus HOM05D006846 ORTHO05D008473 3.1e-30 135.6 118 55.9
PGSC0003DMG400016299 Solanum tuberosum HOM05D006846 ORTHO05D008473 4.0e-30 135.2 151 49.0
BcaC08g43012 Brassica carinata HOM05D006846 ORTHO05D008473 5.3e-30 134.8 122 57.4
C06p02670 Brassica napus HOM05D006846 ORTHO05D008473 5.3e-30 134.8 122 57.4
BolC6t35393H Brassica oleracea HOM05D006846 ORTHO05D008473 6.9e-30 134.4 122 56.6
Carub.0005s0005 Capsella rubella HOM05D006846 ORTHO05D008473 6.9e-30 134.4 142 51.4
Ciclev10007018m.g Citrus clementina HOM05D006846 ORTHO05D008473 6.9e-30 134.4 142 49.3
Carub.0001s3726 Capsella rubella HOM05D003832 ORTHO05D004365 1.5e-29 133.3 123 56.1
CARHR290870 Cardamine hirsuta HOM05D006846 ORTHO05D008473 2.0e-29 132.9 115 58.3
Peaxi162Scf00579g00010 Petunia axillaris HOM05D006846 ORTHO05D008473 2.6e-29 132.5 125 52.8
Dinv29523 Davidia involucrata HOM05D006846 ORTHO05D008473 4.5e-29 131.7 86 73.3
TAR365G0638 Trochodendron aralioides HOM05D006846 ORTHO05D008473 4.5e-29 131.7 144 52.1
AUR62019042 Chenopodium quinoa HOM05D006846 ORTHO05D008473 7.6e-29 131.0 138 51.4
Sp3g23740 Schrenkiella parvula HOM05D006846 ORTHO05D008473 7.6e-29 131.0 118 58.5
BcaB07g33786 Brassica carinata HOM05D006846 ORTHO05D008473 9.9e-29 130.6 122 56.6
CARHR037810 Cardamine hirsuta HOM05D006846 ORTHO05D008473 9.9e-29 130.6 122 54.9
ECA233G5003 Erigeron canadensis HOM05D006846 ORTHO05D008473 9.9e-29 130.6 123 55.3
AUR62027881 Chenopodium quinoa HOM05D006846 ORTHO05D008473 1.3e-28 130.2 118 55.1
Medtr2g046100 Medicago truncatula HOM05D006846 ORTHO05D008473 1.3e-28 130.2 145 48.3
Aqoxy1G00358 Aquilegia oxysepala HOM05D006846 ORTHO05D008473 2.2e-28 129.4 128 55.5
AT1G48170 Arabidopsis thaliana HOM05D006846 ORTHO05D008473 2.2e-28 129.4 124 54.0
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 2.2e-28 129.4 120 54.2
Phvul.009G219800 Phaseolus vulgaris HOM05D006846 ORTHO05D008473 2.2e-28 129.4 120 53.3
SGA_v2.0_scaffold64G22040 Striga asiatica HOM05D006846 ORTHO05D008473 2.2e-28 129.4 139 50.4
AL1G54740 Arabidopsis lyrata HOM05D006846 ORTHO05D008473 2.9e-28 129.0 119 55.5
Os12g0182800 Oryza sativa ssp. japonica HOM05D006846 ORTHO05D008473 2.9e-28 129.0 143 48.3
A06p04640 Brassica napus HOM05D006846 ORTHO05D008473 3.8e-28 128.6 120 55.0
BraA06t23668Z Brassica rapa HOM05D006846 ORTHO05D008473 3.8e-28 128.6 120 55.0
Glyma.15G188800 Glycine max HOM05D006846 ORTHO05D008473 3.8e-28 128.6 120 54.2
THA.LOC104821808 Tarenaya hassleriana HOM05D006846 ORTHO05D008473 6.4e-28 127.9 117 53.8
Lalb_Chr07g0181811 Lupinus albus HOM05D006846 ORTHO05D008473 1.1e-27 127.1 138 50.0
VMungo1309G3101 Vigna mungo HOM05D006846 ORTHO05D008473 1.1e-27 127.1 120 53.3
Thhalv10012405m.g Eutrema salsugineum HOM05D006846 ORTHO05D008473 1.4e-27 126.7 139 50.4
CAN.G136.4 Capsicum annuum HOM05D006846 ORTHO05D008473 1.9e-27 126.3 124 53.2
Psat1g017720 Pisum sativum HOM05D006846 ORTHO05D008473 2.4e-27 125.9 118 54.2
CDE12G0609 Ceratophyllum demersum HOM05D006846 ORTHO05D008473 4.2e-27 125.2 147 44.9
Sc23g0000700 Simmondsia chinensis HOM05D006846 ORTHO05D008473 7.1e-27 124.4 117 52.1
SGA_v2.0_scaffold127G34034 Striga asiatica HOM05D006846 ORTHO05D008473 7.1e-27 124.4 121 54.5
EL10Ac1g01060 Beta vulgaris HOM05D006846 ORTHO05D008473 1.6e-26 123.2 119 53.8
HanXRQChr09g0246471 Helianthus annuus HOM05D006846 ORTHO05D008473 1.0e-25 120.6 121 50.4
Zm00001eb359370 Zea mays HOM05D006846 ORTHO05D008473 3.0e-25 119.0 148 42.6
Aa31LG10G5560 Aethionema arabicum HOM05D006846 ORTHO05D008473 3.9e-25 118.6 131 49.6
TWI73G0996 Tripterygium wilfordii HOM05D006846 ORTHO05D008473 8.7e-25 117.5 123 50.4
SEGI_09291 Sequoiadendron giganteum HOM05D006846 ORTHO05D008473 1.1e-24 117.1 151 44.4
Haze_00535 Corylus avellana HOM05D006846 ORTHO05D008473 1.6e-23 113.2 161 44.7
arahy.Tifrunner.gnm1.ann1.BIT0EB Arachis hypogaea HOM05D006846 ORTHO05D008473 3.7e-23 112.1 109 49.5
unitig_744.g24645 Utricularia gibba HOM05D006846 ORTHO05D008473 1.1e-22 110.5 118 50.8
Haze_00536 Corylus avellana HOM05D006846 ORTHO05D008473 3.1e-22 109.0 161 44.1
Ca_02363_v3 Cicer arietinum L. HOM05D006846 ORTHO05D008473 1.2e-21 107.1 80 63.8
ATR0693G432 Amborella trichopoda HOM05D006846 ORTHO05D008473 7.6e-21 104.4 91 53.8
Lsat_1_v5_gn_6_71441 Lactuca sativa HOM05D006846 ORTHO05D008473 7.6e-21 104.4 103 55.3
SalBow8G5328 Salvia bowleyana HOM05D006846 ORTHO05D008473 7.6e-21 104.4 139 45.3
TPR.G27493 Trifolium pratense HOM05D006846 ORTHO05D008473 8.4e-20 100.9 80 60.0
QL11p040346 Quercus lobata HOM05D006846 ORTHO05D008473 1.4e-19 100.1 136 44.1
Cc03_g00240 Coffea canephora HOM05D006846 ORTHO05D008473 1.9e-19 99.8 91 54.9
Dinv29521 Davidia involucrata HOM05D006846 ORTHO05D008473 2.5e-19 99.4 62 71.0
Pp3c9_17660 Physcomitrium patens HOM05D006846 ORTHO05D008473 3.2e-19 99.0 117 41.9
COL.COLO4_34545 Corchorus olitorius HOM05D005582 ORTHO05D007028 7.1e-19 97.8 90 58.9
Cpa.g.sc146.38 Carica papaya HOM05D006846 ORTHO05D008473 3.0e-17 92.4 84 57.1
MBI19_g16347_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 3.0e-17 92.4 86 59.3
Mapoly0021s0070 Marchantia polymorpha HOM05D006846 ORTHO05D008473 5.1e-17 91.7 124 36.3
vmacro08003 Vaccinium macrocarpon HOM05D006846 ORTHO05D008473 5.1e-17 91.7 78 57.7
Gohir.A09G242000 Gossypium hirsutum HOM05D006846 ORTHO05D008473 3.3e-16 89.0 153 39.9
Hma1.2p1_0013F.1_g007960 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 3.3e-16 89.0 55 70.9
MBI18_g09611_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 7.4e-16 87.8 132 42.4
Nn4g26496 Nelumbo nucifera HOM05D006846 ORTHO05D008473 6.3e-15 84.7 137 41.6
HPP92_004479 Vanilla planifolia HOM05D006846 ORTHO05D008473 1.8e-14 83.2 87 50.6
arahy.Tifrunner.gnm1.ann1.EYUN0W Arachis hypogaea HOM05D000385 ORTHO05D000269 1.2e-13 80.5 92 46.7
Zm00001eb158200 Zea mays HOM05D006846 ORTHO05D008473 1.3e-12 77.0 81 43.2
CSS0050245 Camellia sinensis var. sinensis HOM05D006846 ORTHO05D008473 1.2e-10 70.5 70 57.1
Dinv18032 Davidia involucrata HOM05D006846 ORTHO05D008473 8.8e-09 64.3 82 47.6
AagrBONN_evm.TU.Sc2ySwM_117.777 Anthoceros agrestis HOM05D006846 ORTHO05D008473 1.1e-08 63.9 59 42.4
ClCG04G007450 Citrullus lanatus HOM05D006846 ORTHO05D008473 3.3e-08 62.4 72 50.0
Thecc.01G162200 Theobroma cacao HOM05D006846 ORTHO05D008473 6.3e-07 58.2 59 55.9
CSS0022350 Camellia sinensis var. sinensis HOM05D025454 ORTHO05D024692 9.1e-06 54.3 43 58.1


User provided reference genes

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