Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1146100 Malus domestica HOM05D000726 ORTHO05D248020 2.4e-36 154.8 72 100.0
MD17G1055100 Malus domestica HOM05D000726 ORTHO05D246168 1.6e-32 142.1 66 98.5
FvH4_6g31570 Fragaria vesca HOM05D000726 ORTHO05D000799 9.7e-09 63.2 33 84.8
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 9.7e-09 63.2 33 84.8
FAN05G1028 Fragaria x ananassa HOM05D000726 ORTHO05D000799 9.7e-09 63.2 33 84.8
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 9.7e-09 63.2 33 84.8
FAN14G3110 Fragaria x ananassa HOM05D000726 ORTHO05D000799 9.7e-09 63.2 33 84.8
MD15G1318800 Malus domestica HOM05D000726 ORTHO05D000799 9.7e-09 63.2 33 84.8
MD17G1193300 Malus domestica HOM05D000726 ORTHO05D000799 9.7e-09 63.2 33 84.8
Prupe.3G068700 Prunus persica HOM05D000726 ORTHO05D000799 9.7e-09 63.2 33 84.8
QL05p022175 Quercus lobata HOM05D000726 ORTHO05D000799 9.7e-09 63.2 33 84.8
RcHm_v2.0_Chr2g0138641 Rosa chinensis HOM05D000726 ORTHO05D000799 9.7e-09 63.2 33 84.8
VMungo0331G0482 Vigna mungo HOM05D000726 ORTHO05D000799 9.7e-09 63.2 33 84.8
Zm00001eb353080 Zea mays HOM05D000726 ORTHO05D000799 1.3e-08 62.8 47 63.8
Actinidia21674 Actinidia chinensis HOM05D000726 ORTHO05D000799 6.3e-08 60.5 33 81.8
Aa31LG8G3250 Aethionema arabicum HOM05D000726 ORTHO05D000799 6.3e-08 60.5 33 81.8
CSS0005923 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D000799 6.3e-08 60.5 33 81.8
CsaV3_7G033340 Cucumis sativus L. HOM05D000726 ORTHO05D000799 6.3e-08 60.5 33 81.8
Aqoxy7G01642 Aquilegia oxysepala HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
arahy.Tifrunner.gnm1.ann1.1N4KQX Arachis hypogaea HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
arahy.Tifrunner.gnm1.ann1.H4RKER Arachis hypogaea HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
MSTRG.26358 Avicennia marina HOM05D000726 ORTHO05D031634 8.2e-08 60.1 33 78.8
Ca_20377_v3 Cicer arietinum L. HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
ClCG09G002000 Citrullus lanatus HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
MELO3C024246.2 Cucumis melo HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
Glyma.07G004500 Glycine max HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
Glyma.08G205300 Glycine max HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
Lj3g0004222 Lotus japonicus HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
Lalb_Chr01g0012961 Lupinus albus HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
Manes.04G128400 Manihot esculenta HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
Medtr4g012940 Medicago truncatula HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
Nitab4.5_0001315g0270 Nicotiana tabacum HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
Nitab4.5_0008314g0020 Nicotiana tabacum HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
PSO782G0943 Papaver somniferum HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
PSO832G3309 Papaver somniferum HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
Peaxi162Scf00015g00025 Petunia axillaris HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
Phvul.010G149200 Phaseolus vulgaris HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
Psat7g250320 Pisum sativum HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
Potri.001G182900 Populus trichocarpa HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
Potri.003G053400 Populus trichocarpa HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
Sabra01G0145000 Salix brachista HOM05D000682 ORTHO05D008612 8.2e-08 60.1 33 81.8
Solyc03g120750.3 Solanum lycopersicum HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
Sopen03g039570 Solanum pennellii HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
PGSC0003DMG402002542 Solanum tuberosum HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
TPR.G17679 Trifolium pratense HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
TWI18G1236 Tripterygium wilfordii HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 81.8
Zm00001eb292930 Zea mays HOM05D000726 ORTHO05D000799 8.2e-08 60.1 33 78.8
Haze_25738 Corylus avellana HOM05D000726 ORTHO05D000799 1.1e-07 59.7 48 60.4
Actinidia08988 Actinidia chinensis HOM05D000726 ORTHO05D007769 1.4e-07 59.3 33 81.8
Eucgr.C03821 Eucalyptus grandis HOM05D000726 ORTHO05D000799 1.4e-07 59.3 34 76.5
Sed0023339 Sechium edule HOM05D000726 ORTHO05D000799 1.4e-07 59.3 33 81.8
CANSAT56G1319 Cannabis sativa HOM05D000726 ORTHO05D000799 1.8e-07 58.9 33 78.8
CANSAT56G4498 Cannabis sativa HOM05D000726 ORTHO05D000799 1.8e-07 58.9 33 78.8
Carub.0003s1583 Capsella rubella HOM05D000726 ORTHO05D000799 1.8e-07 58.9 33 78.8
CARHR091260 Cardamine hirsuta HOM05D000726 ORTHO05D000799 1.8e-07 58.9 33 78.8
Cc04_g03150 Coffea canephora HOM05D000726 ORTHO05D000799 1.8e-07 58.9 33 78.8
Thhalv10021533m.g Eutrema salsugineum HOM05D000726 ORTHO05D000799 1.8e-07 58.9 33 78.8
Lsat_1_v5_gn_5_103561 Lactuca sativa HOM05D000726 ORTHO05D000799 1.8e-07 58.9 33 78.8
Lsat_1_v5_gn_8_95360 Lactuca sativa HOM05D000726 ORTHO05D000799 1.8e-07 58.9 33 78.8
Lalb_Chr24g0395901 Lupinus albus HOM05D000726 ORTHO05D000799 1.8e-07 58.9 33 78.8
Nn2g11725 Nelumbo nucifera HOM05D000726 ORTHO05D000799 1.8e-07 58.9 33 78.8
Nn8g39155 Nelumbo nucifera HOM05D000726 ORTHO05D000799 1.8e-07 58.9 33 78.8
Nitab4.5_0002859g0050 Nicotiana tabacum HOM05D000726 ORTHO05D000799 1.8e-07 58.9 33 78.8
Peaxi162Scf00034g00068 Petunia axillaris HOM05D000726 ORTHO05D000799 1.8e-07 58.9 33 78.8
Sp3g14450 Schrenkiella parvula HOM05D000726 ORTHO05D000799 1.8e-07 58.9 33 78.8
Hund09214 Selenicereus undatus HOM05D000726 ORTHO05D000799 1.8e-07 58.9 33 75.8
THA.LOC104810526 Tarenaya hassleriana HOM05D000726 ORTHO05D000799 1.8e-07 58.9 33 78.8
THA.LOC104817985 Tarenaya hassleriana HOM05D000726 ORTHO05D000799 1.8e-07 58.9 33 78.8
Thecc.06G091000 Theobroma cacao HOM05D000726 ORTHO05D000799 1.8e-07 58.9 33 78.8
TWI12G0033 Tripterygium wilfordii HOM05D000726 ORTHO05D000799 1.8e-07 58.9 33 78.8
AT3G16100 Arabidopsis thaliana HOM05D000726 ORTHO05D000799 2.4e-07 58.5 33 78.8
arahy.Tifrunner.gnm1.ann1.1H4K7G Arachis hypogaea HOM05D000726 ORTHO05D000799 2.4e-07 58.5 33 78.8
arahy.Tifrunner.gnm1.ann1.IWZ446 Arachis hypogaea HOM05D000726 ORTHO05D000799 2.4e-07 58.5 33 78.8
Cfa002085 Carpinus fangiana HOM05D000726 ORTHO05D000799 2.4e-07 58.5 33 78.8
CiPaw.03G231200 Carya illinoinensis HOM05D000726 ORTHO05D000799 2.4e-07 58.5 33 78.8
AUR62010982 Chenopodium quinoa HOM05D000726 ORTHO05D000799 2.4e-07 58.5 33 75.8
AUR62021491 Chenopodium quinoa HOM05D000726 ORTHO05D000799 2.4e-07 58.5 33 75.8
Haze_16385 Corylus avellana HOM05D000726 ORTHO05D000799 2.4e-07 58.5 33 78.8
DCAR_028706 Daucus carota HOM05D000726 ORTHO05D000799 2.4e-07 58.5 33 78.8
Dinv30494 Davidia involucrata HOM05D000726 ORTHO05D000799 2.4e-07 58.5 33 78.8
Dinv41611 Davidia involucrata HOM05D000726 ORTHO05D000799 2.4e-07 58.5 33 78.8
Os05g0516600 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D000799 2.4e-07 58.5 33 75.8
PGR102G0284 Punica granatum HOM05D000726 ORTHO05D000799 2.4e-07 58.5 33 78.8
Sabra03G0030000 Salix brachista HOM05D000726 ORTHO05D000799 2.4e-07 58.5 32 84.4
SEGI_01485 Sequoiadendron giganteum HOM05D000726 ORTHO05D000799 2.4e-07 58.5 33 78.8
Thecc.09G109200 Theobroma cacao HOM05D000726 ORTHO05D000799 2.4e-07 58.5 33 78.8
TAR383G0638 Trochodendron aralioides HOM05D000726 ORTHO05D000799 2.4e-07 58.5 33 78.8
TAR626G1294 Trochodendron aralioides HOM05D000726 ORTHO05D000799 2.4e-07 58.5 33 78.8
HPP92_002886 Vanilla planifolia HOM05D000726 ORTHO05D000799 2.4e-07 58.5 33 78.8
HPP92_002905 Vanilla planifolia HOM05D000726 ORTHO05D000799 2.4e-07 58.5 33 78.8
GSVIVG01017061001 Vitis vinifera HOM05D000726 ORTHO05D000799 2.4e-07 58.5 33 78.8
Duzib160G0370 Durio zibethinus HOM05D000726 ORTHO05D007769 3.1e-07 58.2 36 72.2
Nitab4.5_0008007g0010 Nicotiana tabacum HOM05D000726 ORTHO05D000799 3.1e-07 58.2 33 78.8
EL10Ac8g18482 Beta vulgaris HOM05D000726 ORTHO05D000799 4.1e-07 57.8 33 75.8
Migut.K00510 Erythranthe guttata HOM05D000726 ORTHO05D000799 4.1e-07 57.8 33 75.8
Gohir.A10G081000 Gossypium hirsutum HOM05D000726 ORTHO05D000799 4.1e-07 57.8 33 75.8
Gorai.011G074700 Gossypium raimondii HOM05D000726 ORTHO05D000799 4.1e-07 57.8 33 75.8
HPP92_000526 Vanilla planifolia HOM05D000726 ORTHO05D000799 4.1e-07 57.8 33 78.8
Atru.chr7.1361 Acer truncatum HOM05D000726 ORTHO05D000799 5.3e-07 57.4 35 71.4
Aa31LG10G2640 Aethionema arabicum HOM05D000726 ORTHO05D000799 5.3e-07 57.4 33 75.8
ATR0733G219 Amborella trichopoda HOM05D000726 ORTHO05D000799 5.3e-07 57.4 33 75.8
Aqoxy7G03850 Aquilegia oxysepala HOM05D000726 ORTHO05D000799 5.3e-07 57.4 33 75.8
CiPaw.01G237100 Carya illinoinensis HOM05D000726 ORTHO05D000799 5.3e-07 57.4 33 75.8
CiPaw.02G149700 Carya illinoinensis HOM05D000726 ORTHO05D000799 5.3e-07 57.4 33 75.8
CDE05G1278 Ceratophyllum demersum HOM05D000726 ORTHO05D000799 5.3e-07 57.4 33 75.8
CDE05G1627 Ceratophyllum demersum HOM05D000726 ORTHO05D000799 5.3e-07 57.4 33 75.8
COL.COLO4_30404 Corchorus olitorius HOM05D000726 ORTHO05D000799 5.3e-07 57.4 32 81.2
Dinv36640 Davidia involucrata HOM05D000726 ORTHO05D000799 5.3e-07 57.4 33 75.8
Duzib235G0642 Durio zibethinus HOM05D000726 ORTHO05D000799 5.3e-07 57.4 32 81.2
Eucgr.F03029 Eucalyptus grandis HOM05D000726 ORTHO05D000799 5.3e-07 57.4 33 75.8
Eucgr.J02962 Eucalyptus grandis HOM05D000726 ORTHO05D000799 5.3e-07 57.4 33 75.8
Gohir.D03G066200 Gossypium hirsutum HOM05D000726 ORTHO05D000799 5.3e-07 57.4 33 75.8
Gorai.003G064900 Gossypium raimondii HOM05D000726 ORTHO05D000799 5.3e-07 57.4 33 75.8
Hma1.2p1_1463F.1_g285080 Hydrangea macrophylla HOM05D000726 ORTHO05D000799 5.3e-07 57.4 33 75.8
MBI01_g28039_MAGBIO Magnolia biondii HOM05D000726 ORTHO05D000799 5.3e-07 57.4 33 75.8
MBI04_g22015_MAGBIO Magnolia biondii HOM05D000726 ORTHO05D000799 5.3e-07 57.4 33 75.8
PGR102G1288 Punica granatum HOM05D000726 ORTHO05D000799 5.3e-07 57.4 33 75.8
Gohir.A09G082500 Gossypium hirsutum HOM05D000726 ORTHO05D000799 6.9e-07 57.0 33 75.8
Gohir.D09G082400 Gossypium hirsutum HOM05D000726 ORTHO05D000799 6.9e-07 57.0 33 75.8
Gorai.006G098100 Gossypium raimondii HOM05D000726 ORTHO05D000799 6.9e-07 57.0 33 75.8
Hma1.2p1_1455F.1_g284370 Hydrangea macrophylla HOM05D000726 ORTHO05D000799 6.9e-07 57.0 33 75.8
vmacro06221 Vaccinium macrocarpon HOM05D000726 ORTHO05D000799 9.1e-07 56.6 33 75.8
ATR0315G022 Amborella trichopoda HOM05D000726 ORTHO05D000799 1.2e-06 56.2 33 72.7
AL3G28750 Arabidopsis lyrata HOM05D000726 ORTHO05D000799 1.2e-06 56.2 33 72.7
EL10Ac2g04077 Beta vulgaris HOM05D000726 ORTHO05D000799 1.2e-06 56.2 33 72.7
CARHR042390 Cardamine hirsuta HOM05D000726 ORTHO05D000799 1.2e-06 56.2 33 72.7
Ca_01124_v3 Cicer arietinum L. HOM05D000726 ORTHO05D000799 1.2e-06 56.2 33 72.7
Gohir.D10G070400 Gossypium hirsutum HOM05D000726 ORTHO05D000799 1.2e-06 56.2 32 78.1
Medtr2g101890 Medicago truncatula HOM05D000726 ORTHO05D000799 1.2e-06 56.2 33 72.7
Oeu002239.1 Olea europaea HOM05D000726 ORTHO05D000799 1.2e-06 56.2 32 78.1
SalBow1G0781 Salvia bowleyana HOM05D000726 ORTHO05D000799 1.2e-06 56.2 32 78.1
Sc09g0009070 Simmondsia chinensis HOM05D000726 ORTHO05D000799 1.2e-06 56.2 33 72.7
TPR.G37270 Trifolium pratense HOM05D000726 ORTHO05D000799 1.2e-06 56.2 33 72.7
CBR_g4187 Chara braunii HOM05D000726 ORTHO05D000799 1.5e-06 55.8 33 75.8
Gohir.A02G120500 Gossypium hirsutum HOM05D000726 ORTHO05D000799 1.5e-06 55.8 33 72.7
Psat5g298320 Pisum sativum HOM05D000726 ORTHO05D000799 1.5e-06 55.8 33 72.7
AUR62009333 Chenopodium quinoa HOM05D000726 ORTHO05D000799 2.0e-06 55.5 33 72.7
AUR62023019 Chenopodium quinoa HOM05D000726 ORTHO05D000799 2.0e-06 55.5 33 72.7
Duzib168G1281 Durio zibethinus HOM05D000726 ORTHO05D000799 2.0e-06 55.5 33 75.8
Duzib248G0142 Durio zibethinus HOM05D000726 ORTHO05D000799 2.0e-06 55.5 33 72.7
Os01g0227300 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D000799 2.0e-06 55.5 33 69.7
QL02p085142 Quercus lobata HOM05D000726 ORTHO05D000799 2.0e-06 55.5 32 78.1
Zm00001eb339100 Zea mays HOM05D000726 ORTHO05D000799 2.0e-06 55.5 33 69.7
Aqoxy5G01661 Aquilegia oxysepala HOM05D000726 ORTHO05D000799 2.6e-06 55.1 33 72.7
Sc18g0001280 Simmondsia chinensis HOM05D000726 ORTHO05D000799 2.6e-06 55.1 33 72.7
AL1G60440 Arabidopsis lyrata HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
AT1G52280 Arabidopsis thaliana HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
BcaB02g11016 Brassica carinata HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
BcaB04g17161 Brassica carinata HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
BcaC01g01317 Brassica carinata HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
BcaC08g43382 Brassica carinata HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
BcaC08g43980 Brassica carinata HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
A05p19100 Brassica napus HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
A06p01930 Brassica napus HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
A08p02240 Brassica napus HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
C03p90540 Brassica napus HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
C06p07490 Brassica napus HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
C06p13830 Brassica napus HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
BolC3t21377H Brassica oleracea HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
BolC6t35838H Brassica oleracea HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
BolC6t36555H Brassica oleracea HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
BraA06t23409Z Brassica rapa HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
BraA08t32269Z Brassica rapa HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
CSS0040376 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
CSS0045070 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
Carub.0001s4124 Capsella rubella HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
Ciclev10009505m.g Citrus clementina HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
Cc02_g17670 Coffea canephora HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
Thhalv10011782m.g Eutrema salsugineum HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
Gohir.D13G033400 Gossypium hirsutum HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
HanXRQChr12g0376841 Helianthus annuus HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
Lsat_1_v5_gn_5_130560 Lactuca sativa HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
Lj5A58T73 Lonicera japonica HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
Sp1g38810 Schrenkiella parvula HOM05D000726 ORTHO05D000799 3.4e-06 54.7 33 72.7
Ah.09g231120 Amaranthus hybridus HOM05D000726 ORTHO05D000799 4.5e-06 54.3 33 69.7
Pp3c11_11200 Physcomitrium patens HOM05D000726 ORTHO05D000799 4.5e-06 54.3 33 75.8
ECA234G1301 Erigeron canadensis HOM05D000726 ORTHO05D000799 5.9e-06 53.9 33 72.7
Mapoly0946s0001 Marchantia polymorpha HOM05D000726 ORTHO05D000799 5.9e-06 53.9 33 72.7


User provided reference genes

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