Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1145900 Malus domestica HOM05D005991 ORTHO05D007408 2.4e-114 415.6 222 100.0
MD13G1147500 Malus domestica HOM05D005991 ORTHO05D007408 1.4e-95 353.2 222 87.8
FvH4_4g20890 Fragaria vesca HOM05D005991 ORTHO05D007408 1.1e-79 300.4 223 75.3
FAN12G0391 Fragaria x ananassa HOM05D005991 ORTHO05D007408 1.1e-79 300.4 223 75.3
FAN07G2713 Fragaria x ananassa HOM05D005991 ORTHO05D007408 1.5e-79 300.1 223 75.3
FAN17G2933 Fragaria x ananassa HOM05D005991 ORTHO05D007408 5.5e-79 298.1 223 74.4
Prupe.1G111000 Prunus persica HOM05D005991 ORTHO05D007408 6.7e-77 291.2 222 74.8
RcHm_v2.0_Chr4g0426321 Rosa chinensis HOM05D005991 ORTHO05D007408 8.8e-77 290.8 223 73.5
Cfa015696 Carpinus fangiana HOM05D005991 ORTHO05D007408 6.3e-67 258.1 222 66.2
PGR004G0142 Punica granatum HOM05D005991 ORTHO05D007408 3.1e-66 255.8 220 64.1
TWI09G0093 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 4.1e-66 255.4 222 64.9
TWI53G1476 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 5.4e-66 255.0 222 64.9
Dinv05101 Davidia involucrata HOM05D005991 ORTHO05D007408 1.6e-65 253.4 226 64.6
Haze_00826 Corylus avellana HOM05D005991 ORTHO05D007408 2.7e-65 252.7 222 64.9
TWI73G0156 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 3.5e-65 252.3 223 65.9
Manes.03G209000 Manihot esculenta HOM05D005991 ORTHO05D007408 1.7e-64 250.0 220 65.0
Eucgr.H04085 Eucalyptus grandis HOM05D005991 ORTHO05D007408 3.8e-64 248.8 223 62.8
CsaV3_6G000060 Cucumis sativus L. HOM05D005991 ORTHO05D007408 1.5e-63 246.9 222 62.6
MELO3C021248.2 Cucumis melo HOM05D005991 ORTHO05D007408 5.5e-63 245.0 222 62.2
Psat0s2692g0080 Pisum sativum HOM05D005991 ORTHO05D007408 2.1e-62 243.0 222 61.3
Lj4g0017646 Lotus japonicus HOM05D005991 ORTHO05D007408 2.7e-62 242.7 223 63.2
ClCG06G004330 Citrullus lanatus HOM05D005991 ORTHO05D007408 3.6e-62 242.3 222 62.2
Atru.chr4.3094 Acer truncatum HOM05D005991 ORTHO05D007408 4.7e-62 241.9 217 64.5
Potri.010G151300 Populus trichocarpa HOM05D005991 ORTHO05D007408 4.7e-62 241.9 224 61.6
TPR.G12610 Trifolium pratense HOM05D005991 ORTHO05D007408 6.1e-62 241.5 222 62.2
Lalb_Chr13g0298761 Lupinus albus HOM05D005991 ORTHO05D007408 8.0e-62 241.1 221 62.9
CSS0003210 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 1.4e-61 240.4 229 62.4
Rhsim02G0001600 Rhododendron simsii HOM05D005991 ORTHO05D007408 1.4e-61 240.4 224 64.3
Sed0009947 Sechium edule HOM05D005991 ORTHO05D007408 5.2e-61 238.4 224 62.5
GSVIVG01017637001 Vitis vinifera HOM05D005991 ORTHO05D007408 5.2e-61 238.4 227 63.0
MBI18_g36460_MAGBIO Magnolia biondii HOM05D005991 ORTHO05D007408 3.4e-60 235.7 225 61.3
Glyma.07G232800 Glycine max HOM05D005991 ORTHO05D007408 7.5e-60 234.6 222 62.6
Medtr4g123060 Medicago truncatula HOM05D005991 ORTHO05D007408 2.8e-59 232.6 221 60.6
vmacro19301 Vaccinium macrocarpon HOM05D005991 ORTHO05D007408 2.8e-59 232.6 224 62.5
QL06p013384 Quercus lobata HOM05D005991 ORTHO05D007408 3.7e-59 232.3 225 62.2
Sc23g0006090 Simmondsia chinensis HOM05D005991 ORTHO05D007408 1.1e-58 230.7 225 58.2
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 5.4e-58 228.4 227 61.2
TAR362G0621 Trochodendron aralioides HOM05D005991 ORTHO05D007408 5.4e-58 228.4 224 59.8
Aqoxy7G00454 Aquilegia oxysepala HOM05D005991 ORTHO05D007408 9.2e-58 227.6 228 60.1
TAR633G0953 Trochodendron aralioides HOM05D005991 ORTHO05D007408 1.6e-57 226.9 227 60.4
Cpa.g.sc146.66 Carica papaya HOM05D005991 ORTHO05D007408 2.0e-57 226.5 222 59.0
DCAR_019078 Daucus carota HOM05D005991 ORTHO05D007408 4.5e-57 225.3 226 61.5
MSTRG.22639 Avicennia marina HOM05D005991 ORTHO05D007408 5.9e-57 224.9 228 59.6
Ca_21401_v3 Cicer arietinum L. HOM05D005991 ORTHO05D007408 1.3e-56 223.8 223 57.0
Actinidia18486 Actinidia chinensis HOM05D005991 ORTHO05D007408 2.3e-56 223.0 217 60.8
Actinidia28298 Actinidia chinensis HOM05D005991 ORTHO05D007408 3.8e-56 222.2 226 60.6
Migut.I00898 Erythranthe guttata HOM05D005991 ORTHO05D007408 3.8e-56 222.2 229 59.0
CANSAT78G1707 Cannabis sativa HOM05D005991 ORTHO05D007408 5.0e-56 221.9 220 59.5
Oeu009727.1 Olea europaea HOM05D005991 ORTHO05D007408 8.6e-56 221.1 229 60.3
EL10Ac2g02410 Beta vulgaris HOM05D005991 ORTHO05D007408 1.1e-55 220.7 226 58.0
arahy.Tifrunner.gnm1.ann1.5JMV2K Arachis hypogaea HOM05D005991 ORTHO05D007408 2.5e-55 219.5 222 59.5
Lj9A696T49 Lonicera japonica HOM05D005991 ORTHO05D007408 4.3e-55 218.8 229 58.1
arahy.Tifrunner.gnm1.ann1.ELD4MI Arachis hypogaea HOM05D005991 ORTHO05D007408 7.3e-55 218.0 221 59.3
Duzib151G0057 Durio zibethinus HOM05D005991 ORTHO05D007408 1.2e-54 217.2 226 56.6
Nn3g21864 Nelumbo nucifera HOM05D005991 ORTHO05D007408 1.2e-54 217.2 224 58.0
CiPaw.01G133100 Carya illinoinensis HOM05D005991 ORTHO05D007408 2.1e-54 216.5 192 65.1
unitig_32.g11589 Utricularia gibba HOM05D005991 ORTHO05D007408 2.8e-54 216.1 225 57.8
Glyma.17G037800 Glycine max HOM05D005991 ORTHO05D007408 3.6e-54 215.7 222 59.5
VMungo1215G0582 Vigna mungo HOM05D005991 ORTHO05D007408 3.6e-54 215.7 223 58.3
Gorai.005G069300 Gossypium raimondii HOM05D005991 ORTHO05D007408 1.0e-53 214.2 241 53.9
Phvul.003G118700 Phaseolus vulgaris HOM05D005991 ORTHO05D007408 1.0e-53 214.2 223 58.3
Gohir.A02G056400 Gossypium hirsutum HOM05D005991 ORTHO05D007408 2.3e-53 213.0 240 52.9
Gohir.D02G061600 Gossypium hirsutum HOM05D005991 ORTHO05D007408 2.3e-53 213.0 240 53.3
Ciclev10005452m.g Citrus clementina HOM05D005991 ORTHO05D007408 3.0e-53 212.6 222 58.1
THA.LOC104827106 Tarenaya hassleriana HOM05D005991 ORTHO05D007408 4.0e-53 212.2 225 57.3
Thecc.04G307900 Theobroma cacao HOM05D005991 ORTHO05D007408 8.9e-53 211.1 276 48.9
COL.COLO4_34551 Corchorus olitorius HOM05D005991 ORTHO05D007408 1.5e-52 210.3 199 61.3
Nitab4.5_0003374g0080 Nicotiana tabacum HOM05D005991 ORTHO05D007408 1.5e-52 210.3 230 57.0
Os01g0328500 Oryza sativa ssp. japonica HOM05D005991 ORTHO05D007408 3.4e-52 209.1 222 54.1
Cc10_g13510 Coffea canephora HOM05D005991 ORTHO05D007408 7.5e-52 208.0 223 58.3
ECA234G0222 Erigeron canadensis HOM05D005991 ORTHO05D007408 2.9e-51 206.1 231 57.6
PGSC0003DMG400030844 Solanum tuberosum HOM05D005991 ORTHO05D007408 1.4e-50 203.8 230 54.8
Ah.11g042100 Amaranthus hybridus HOM05D005991 ORTHO05D007408 1.8e-50 203.4 223 54.7
Cc00_g31090 Coffea canephora HOM05D005991 ORTHO05D007408 5.4e-50 201.8 223 57.4
Zm00001eb340570 Zea mays HOM05D005991 ORTHO05D007408 5.4e-50 201.8 222 54.1
Lsat_1_v5_gn_4_27741 Lactuca sativa HOM05D005991 ORTHO05D007408 7.0e-50 201.4 228 56.1
Nitab4.5_0013885g0020 Nicotiana tabacum HOM05D005991 ORTHO05D007408 1.2e-49 200.7 230 53.5
Zm00001eb131050 Zea mays HOM05D005991 ORTHO05D007408 2.7e-49 199.5 222 53.2
Sopen04g029760 Solanum pennellii HOM05D005991 ORTHO05D007408 3.5e-49 199.1 225 53.8
BcaB04g19640 Brassica carinata HOM05D005991 ORTHO05D007408 1.0e-48 197.6 219 54.8
HanXRQChr16g0526201 Helianthus annuus HOM05D005991 ORTHO05D007408 1.0e-48 197.6 227 53.3
arahy.Tifrunner.gnm1.ann1.KWD76U Arachis hypogaea HOM05D005991 ORTHO05D007408 1.3e-48 197.2 222 55.0
Aa31LG11G8380 Aethionema arabicum HOM05D005991 ORTHO05D007408 3.0e-48 196.1 227 54.6
C09p05460 Brassica napus HOM05D005991 ORTHO05D007408 1.1e-47 194.1 220 54.1
Peaxi162Scf00139g00312 Petunia axillaris HOM05D005991 ORTHO05D007408 1.9e-47 193.4 225 53.8
A09p05050 Brassica napus HOM05D005991 ORTHO05D007408 2.5e-47 193.0 219 53.9
BraA09t36144Z Brassica rapa HOM05D005991 ORTHO05D007408 2.5e-47 193.0 219 53.9
CAN.G1173.8 Capsicum annuum HOM05D005991 ORTHO05D007408 3.3e-47 192.6 230 54.8
Sp2g19950 Schrenkiella parvula HOM05D005991 ORTHO05D007408 1.6e-46 190.3 224 52.2
Solyc04g074800.3 Solanum lycopersicum HOM05D005991 ORTHO05D007408 2.1e-46 189.9 232 50.9
HPP92_017296 Vanilla planifolia HOM05D005991 ORTHO05D007408 3.6e-46 189.1 223 52.5
CARHR185530 Cardamine hirsuta HOM05D005991 ORTHO05D007408 1.0e-45 187.6 230 51.7
BcaC04g23714 Brassica carinata HOM05D005991 ORTHO05D007408 1.4e-45 187.2 219 53.0
Sp6g09550 Schrenkiella parvula HOM05D005991 ORTHO05D007408 1.4e-45 187.2 224 51.8
ATR0693G149 Amborella trichopoda HOM05D005991 ORTHO05D007408 3.1e-45 186.0 228 55.3
BolC7t44538H Brassica oleracea HOM05D005991 ORTHO05D007408 4.0e-45 185.7 221 54.8
BcaNung02118 Brassica carinata HOM05D005991 ORTHO05D007408 5.2e-45 185.3 221 54.3
C07p40040 Brassica napus HOM05D005991 ORTHO05D007408 5.2e-45 185.3 221 54.3
AL6G41020 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 2.0e-44 183.3 225 52.0
AT5G30490 Arabidopsis thaliana HOM05D005991 ORTHO05D007408 1.7e-43 180.3 225 51.1
BraA06t26732Z Brassica rapa HOM05D005991 ORTHO05D007408 2.2e-43 179.9 219 53.0
Carub.0020s0004 Capsella rubella HOM05D005991 ORTHO05D007408 4.9e-43 178.7 224 50.9
A06p38170 Brassica napus HOM05D005991 ORTHO05D007408 1.1e-42 177.6 222 53.2
Thhalv10004825m.g Eutrema salsugineum HOM05D005991 ORTHO05D007408 1.1e-42 177.6 228 48.7
BolC9t53475H Brassica oleracea HOM05D005991 ORTHO05D007408 4.1e-42 175.6 245 48.6
PSO017G0870 Papaver somniferum HOM05D005991 ORTHO05D007408 7.8e-41 171.4 222 49.5
PGR119G0116 Punica granatum HOM05D005991 ORTHO05D007408 3.3e-39 166.0 122 70.5
BcaC06g30693 Brassica carinata HOM05D005991 ORTHO05D007408 2.1e-38 163.3 226 47.3
PSO675G8194 Papaver somniferum HOM05D005991 ORTHO05D007408 2.8e-38 162.9 222 47.3
AUR62020284 Chenopodium quinoa HOM05D005991 ORTHO05D007408 3.6e-38 162.5 124 72.6
AUR62037721 Chenopodium quinoa HOM05D005991 ORTHO05D007408 3.1e-37 159.5 124 71.0
Mapoly0030s0047 Marchantia polymorpha HOM05D005991 ORTHO05D007408 7.1e-34 148.3 241 43.6
SEGI_07358 Sequoiadendron giganteum HOM05D005991 ORTHO05D007408 4.6e-33 145.6 208 44.7
arahy.Tifrunner.gnm1.ann1.FWR109 Arachis hypogaea HOM05D005991 ORTHO05D007408 7.3e-31 138.3 121 65.3
CSS0020858 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 3.2e-26 122.9 143 53.8
Cre14.g632600 Chlamydomonas reinhardtii HOM05D005991 ORTHO05D007408 7.1e-26 121.7 162 46.9
Pp3c5_15500 Physcomitrium patens HOM05D005991 ORTHO05D007408 3.9e-24 115.9 227 37.9
SMO203G0019 Selaginella moellendorffii HOM05D005991 ORTHO05D007408 3.9e-24 115.9 193 42.5
AagrBONN_evm.TU.Sc2ySwM_117.1275 Anthoceros agrestis HOM05D005991 ORTHO05D007408 6.6e-24 115.2 133 50.4
CDE05G0304 Ceratophyllum demersum HOM05D005991 ORTHO05D007408 2.5e-23 113.2 161 48.4
CBR_g56129 Chara braunii HOM05D005991 ORTHO05D007408 1.8e-21 107.1 127 48.0
MCO08G234 Micromonas commoda HOM05D005991 ORTHO05D007408 5.8e-12 75.5 192 33.3
PRCOL_00003370 Prasinoderma coloniale HOM05D005991 ORTHO05D007408 9.3e-10 68.2 147 38.8
Sabra10G0116500 Salix brachista HOM05D005991 ORTHO05D007408 1.2e-09 67.8 106 43.4
Actinidia31584 Actinidia chinensis HOM05D005991 ORTHO05D007408 3.0e-08 63.2 173 39.3
AL1G65220 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 4.3e-07 59.3 104 41.3
GSVIVG01017610001 Vitis vinifera HOM05D005991 ORTHO05D007408 9.6e-07 58.2 133 39.1


User provided reference genes

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