Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1140400 Malus domestica HOM05D006364 ORTHO05D007968 3.7e-45 184.5 92 100.0
GSVIVG01017645001 Vitis vinifera HOM05D006364 ORTHO05D007968 1.2e-40 169.5 92 89.1
Nn3g21850 Nelumbo nucifera HOM05D006364 ORTHO05D007968 1.6e-40 169.1 92 89.1
QL06p013601 Quercus lobata HOM05D006364 ORTHO05D007968 2.7e-40 168.3 91 87.9
Gohir.A02G086100 Gossypium hirsutum HOM05D006364 ORTHO05D007968 1.4e-39 166.0 92 87.0
Gohir.D02G062300 Gossypium hirsutum HOM05D006364 ORTHO05D007968 1.4e-39 166.0 92 87.0
Gorai.005G070100 Gossypium raimondii HOM05D006364 ORTHO05D007968 1.4e-39 166.0 92 87.0
Thecc.04G308800 Theobroma cacao HOM05D006364 ORTHO05D007968 2.3e-39 165.2 92 87.0
Prupe.1G110000 Prunus persica HOM05D006364 ORTHO05D007968 3.0e-39 164.9 89 91.0
Duzib212G0576 Durio zibethinus HOM05D006364 ORTHO05D007968 3.9e-39 164.5 92 85.9
THA.LOC104820323 Tarenaya hassleriana HOM05D006364 ORTHO05D007968 5.2e-39 164.1 92 84.8
Cpa.g.sc146.52 Carica papaya HOM05D006364 ORTHO05D007968 1.1e-38 162.9 92 85.9
RcHm_v2.0_Chr4g0426541 Rosa chinensis HOM05D006364 ORTHO05D007968 1.1e-38 162.9 88 88.6
Dinv15615 Davidia involucrata HOM05D006364 ORTHO05D007968 2.0e-38 162.2 92 85.9
Actinidia02518 Actinidia chinensis HOM05D006364 ORTHO05D007968 2.6e-38 161.8 92 87.0
CSS0027206 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 5.7e-38 160.6 92 84.8
Duzib151G1172 Durio zibethinus HOM05D006364 ORTHO05D007968 5.7e-38 160.6 90 84.4
Cc03_g00390 Coffea canephora HOM05D006364 ORTHO05D007968 7.4e-38 160.2 88 85.2
arahy.Tifrunner.gnm1.ann1.28BCJ9 Arachis hypogaea HOM05D006364 ORTHO05D007968 9.7e-38 159.8 88 85.2
arahy.Tifrunner.gnm1.ann1.8W9CKH Arachis hypogaea HOM05D006364 ORTHO05D007968 9.7e-38 159.8 88 85.2
arahy.Tifrunner.gnm1.ann1.ZVI86Q Arachis hypogaea HOM05D006364 ORTHO05D007968 9.7e-38 159.8 88 85.2
FvH4_4g21000 Fragaria vesca HOM05D006364 ORTHO05D007968 9.7e-38 159.8 88 87.5
FAN12G1354 Fragaria x ananassa HOM05D000037 ORTHO05D001684 9.7e-38 159.8 88 87.5
TWI73G0896 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 1.3e-37 159.5 92 82.6
Glyma.15G136600 Glycine max HOM05D006364 ORTHO05D007968 1.7e-37 159.1 88 85.2
Rhsim02G0000900 Rhododendron simsii HOM05D006364 ORTHO05D007968 1.7e-37 159.1 92 84.8
CDE11G0289 Ceratophyllum demersum HOM05D006364 ORTHO05D007968 2.2e-37 158.7 89 82.0
CsaV3_3G015430 Cucumis sativus L. HOM05D006364 ORTHO05D007968 2.2e-37 158.7 92 81.5
COL.COLO4_34533 Corchorus olitorius HOM05D006364 ORTHO05D007968 2.8e-37 158.3 92 83.7
Haze_00814 Corylus avellana HOM05D006364 ORTHO05D007968 4.8e-37 157.5 92 84.8
Potri.010G152100 Populus trichocarpa HOM05D006364 ORTHO05D007968 4.8e-37 157.5 92 81.5
HPP92_017027 Vanilla planifolia HOM05D006364 ORTHO05D007968 4.8e-37 157.5 92 80.4
Hma1.2p1_0013F.1_g008050 Hydrangea macrophylla HOM05D006364 ORTHO05D007968 6.3e-37 157.1 92 82.6
MELO3C006742.2 Cucumis melo HOM05D006364 ORTHO05D007968 8.2e-37 156.8 92 81.5
EL10Ac1g00595 Beta vulgaris HOM05D006364 ORTHO05D007968 1.1e-36 156.4 88 84.1
CANSAT78G0762 Cannabis sativa HOM05D006364 ORTHO05D007968 1.1e-36 156.4 92 82.6
HanXRQChr09g0252081 Helianthus annuus HOM05D006364 ORTHO05D007968 2.4e-36 155.2 88 83.0
Medtr2g032700 Medicago truncatula HOM05D006364 ORTHO05D007968 2.4e-36 155.2 88 80.7
CiPaw.01G113600 Carya illinoinensis HOM05D006364 ORTHO05D007968 3.1e-36 154.8 88 84.1
Phvul.006G121400 Phaseolus vulgaris HOM05D006364 ORTHO05D007968 3.1e-36 154.8 88 83.0
CSS0032087 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 4.1e-36 154.5 92 82.6
Lalb_Chr18g0058441 Lupinus albus HOM05D006364 ORTHO05D007968 5.3e-36 154.1 88 83.0
Nitab4.5_0000152g0370 Nicotiana tabacum HOM05D006364 ORTHO05D007968 5.3e-36 154.1 92 80.4
Nitab4.5_0003130g0060 Nicotiana tabacum HOM05D006364 ORTHO05D007968 5.3e-36 154.1 92 80.4
Peaxi162Scf00126g01328 Petunia axillaris HOM05D006364 ORTHO05D007968 5.3e-36 154.1 92 80.4
Potri.008G100400 Populus trichocarpa HOM05D006364 ORTHO05D007968 5.3e-36 154.1 86 82.6
Sed0012877 Sechium edule HOM05D006364 ORTHO05D007968 5.3e-36 154.1 92 80.4
CAN.G175.13 Capsicum annuum HOM05D006364 ORTHO05D007968 7.0e-36 153.7 92 80.4
Glyma.09G031500 Glycine max HOM05D006364 ORTHO05D007968 7.0e-36 153.7 92 79.3
Actinidia31587 Actinidia chinensis HOM05D006364 ORTHO05D007968 9.1e-36 153.3 92 80.4
Solyc04g071180.3 Solanum lycopersicum HOM05D006364 ORTHO05D007968 9.1e-36 153.3 92 80.4
Sopen04g027130 Solanum pennellii HOM05D006364 ORTHO05D007968 9.1e-36 153.3 92 80.4
Aa31LG8G4220 Aethionema arabicum HOM05D006364 ORTHO05D007968 1.6e-35 152.5 92 76.1
Eucgr.H04093 Eucalyptus grandis HOM05D006364 ORTHO05D007968 1.6e-35 152.5 92 78.3
MSTRG.26303 Avicennia marina HOM05D006364 ORTHO05D007968 2.6e-35 151.8 91 79.1
DCAR_026961 Daucus carota HOM05D006364 ORTHO05D007968 2.6e-35 151.8 88 81.8
Psat1g163400 Pisum sativum HOM05D006364 ORTHO05D007968 2.6e-35 151.8 88 79.5
CAN.G689.14 Capsicum annuum HOM05D006364 ORTHO05D007968 3.5e-35 151.4 92 79.3
ECA246G0645 Erigeron canadensis HOM05D006364 ORTHO05D007968 4.5e-35 151.0 88 80.7
Aqoxy2G02602 Aquilegia oxysepala HOM05D006364 ORTHO05D007968 5.9e-35 150.6 92 79.3
Migut.B01021 Erythranthe guttata HOM05D006364 ORTHO05D007968 5.9e-35 150.6 91 78.0
Migut.N00017 Erythranthe guttata HOM05D006364 ORTHO05D007968 5.9e-35 150.6 91 78.0
Lalb_Chr20g0120331 Lupinus albus HOM05D006364 ORTHO05D007968 5.9e-35 150.6 87 81.6
Zm00001eb028690 Zea mays HOM05D006364 ORTHO05D007968 7.7e-35 150.2 89 78.7
PGSC0003DMG400008613 Solanum tuberosum HOM05D006364 ORTHO05D007968 1.0e-34 149.8 92 79.3
Lj7E712T1 Lonicera japonica HOM05D006364 ORTHO05D007968 1.3e-34 149.4 87 80.5
TPR.G30811 Trifolium pratense HOM05D006364 ORTHO05D007968 1.3e-34 149.4 88 79.5
Sp3g15490 Schrenkiella parvula HOM05D006364 ORTHO05D007968 1.7e-34 149.1 92 77.2
Os12g0566100 Oryza sativa ssp. japonica HOM05D006364 ORTHO05D007968 2.2e-34 148.7 89 77.5
Lj6g0013185 Lotus japonicus HOM05D006364 ORTHO05D007968 2.9e-34 148.3 88 81.8
Hund19242 Selenicereus undatus HOM05D006364 ORTHO05D007968 2.9e-34 148.3 92 75.0
Zm00001eb418900 Zea mays HOM05D006364 ORTHO05D007968 3.8e-34 147.9 88 78.4
AL3G30350 Arabidopsis lyrata HOM05D006364 ORTHO05D007968 5.0e-34 147.5 92 77.2
AT3G17300 Arabidopsis thaliana HOM05D006364 ORTHO05D007968 5.0e-34 147.5 92 77.2
Carub.0003s1701 Capsella rubella HOM05D006364 ORTHO05D007968 5.0e-34 147.5 92 77.2
PGR004G1259 Punica granatum HOM05D006364 ORTHO05D007968 6.5e-34 147.1 92 76.1
TWI09G0430 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 6.5e-34 147.1 89 80.9
BcaB04g18937 Brassica carinata HOM05D006364 ORTHO05D007968 1.1e-33 146.4 92 76.1
BcaB04g20848 Brassica carinata HOM05D006364 ORTHO05D007968 1.1e-33 146.4 92 76.1
A03p40140 Brassica napus HOM05D006364 ORTHO05D007968 1.1e-33 146.4 92 76.1
BraA03t13164Z Brassica rapa HOM05D006364 ORTHO05D007968 1.1e-33 146.4 92 76.1
Thhalv10021841m.g Eutrema salsugineum HOM05D006364 ORTHO05D007968 1.1e-33 146.4 92 76.1
unitig_22.g5765 Utricularia gibba HOM05D006364 ORTHO05D007968 1.9e-33 145.6 92 75.0
BcaC01g03770 Brassica carinata HOM05D006364 ORTHO05D007968 2.5e-33 145.2 92 75.0
BcaC01g03776 Brassica carinata HOM05D006364 ORTHO05D007968 4.2e-33 144.4 92 75.0
C03p48710 Brassica napus HOM05D006364 ORTHO05D007968 4.2e-33 144.4 92 75.0
C03p48760 Brassica napus HOM05D006364 ORTHO05D007968 4.2e-33 144.4 92 75.0
BolC3t17152H Brassica oleracea HOM05D006364 ORTHO05D007968 4.2e-33 144.4 92 75.0
BcaC09g48691 Brassica carinata HOM05D006364 ORTHO05D007968 5.5e-33 144.1 92 75.0
C01p46890 Brassica napus HOM05D006364 ORTHO05D007968 5.5e-33 144.1 92 75.0
BolC1t04661H Brassica oleracea HOM05D006364 ORTHO05D007968 5.5e-33 144.1 92 75.0
Rhsim04G0245400 Rhododendron simsii HOM05D006364 ORTHO05D007968 2.1e-32 142.1 135 59.3
CARHR092600 Cardamine hirsuta HOM05D006364 ORTHO05D007968 4.7e-32 141.0 90 75.6
AUR62034532 Chenopodium quinoa HOM05D000862 ORTHO05D000943 4.7e-32 141.0 84 77.4
PSO210G6302 Papaver somniferum HOM05D006364 ORTHO05D007968 8.0e-32 140.2 92 73.9
PSO761G0417 Papaver somniferum HOM05D006364 ORTHO05D007968 8.0e-32 140.2 92 73.9
AUR62014465 Chenopodium quinoa HOM05D000862 ORTHO05D000943 1.4e-31 139.4 84 76.2
A01p37010 Brassica napus HOM05D006364 ORTHO05D007968 1.8e-31 139.0 92 72.8
BraA01t03762Z Brassica rapa HOM05D006364 ORTHO05D007968 1.8e-31 139.0 92 72.8
SHI21779 Sapria himalayana HOM05D006364 ORTHO05D007968 7.5e-30 133.7 82 78.0
Manes.03G210000 Manihot esculenta HOM05D006364 ORTHO05D007968 8.2e-29 130.2 92 72.8
ClCG05G006780 Citrullus lanatus HOM05D006364 ORTHO05D007968 3.1e-28 128.3 144 52.8
Zm00001eb137950 Zea mays HOM05D006364 ORTHO05D007968 7.0e-28 127.1 119 55.5
AUR62036805 Chenopodium quinoa HOM05D000862 ORTHO05D000943 1.3e-26 122.9 120 54.2
Lsat_1_v5_gn_6_117381 Lactuca sativa HOM05D006364 ORTHO05D007968 3.8e-26 121.3 84 71.4
Sc07g0002970 Simmondsia chinensis HOM05D006364 ORTHO05D007968 5.0e-26 120.9 65 87.7
Dinv29542 Davidia involucrata HOM05D006364 ORTHO05D007968 3.2e-25 118.2 65 86.2
MBI18_g09661_MAGBIO Magnolia biondii HOM05D006364 ORTHO05D007968 5.5e-25 117.5 119 58.8
Sed0013937 Sechium edule HOM05D006364 ORTHO05D007968 2.7e-24 115.2 66 80.3
Ah.05g176740 Amaranthus hybridus HOM05D006364 ORTHO05D007968 4.7e-24 114.4 65 83.1
SalBow4G1453 Salvia bowleyana HOM05D006364 ORTHO05D007968 2.6e-22 108.6 91 60.4
Zm00001eb224320 Zea mays HOM05D006364 ORTHO05D007968 7.5e-22 107.1 65 75.4
Zm00001eb193610 Zea mays HOM05D006364 ORTHO05D007968 4.1e-20 101.3 60 76.7
SGA_v2.0_scaffold449G51796 Striga asiatica HOM05D006364 ORTHO05D007968 8.5e-18 93.6 94 56.4
EL10Ac3g06351 Beta vulgaris HOM05D006364 ORTHO05D007968 9.5e-17 90.1 56 73.2
Hund17201 Selenicereus undatus HOM05D000862 ORTHO05D000943 1.2e-16 89.7 88 55.7
SalBow6G4934 Salvia bowleyana HOM05D006364 ORTHO05D007968 3.6e-16 88.2 93 50.5
vmacro07987 Vaccinium macrocarpon HOM05D006364 ORTHO05D007968 6.8e-15 84.0 266 29.3
MD13G1146500 Malus domestica HOM05D006364 ORTHO05D007968 2.0e-14 82.4 56 76.8
SMO196G0146 Selaginella moellendorffii HOM05D006364 ORTHO05D007968 3.7e-13 78.2 71 49.3
AagrBONN_evm.TU.Sc2ySwM_368.2196 Anthoceros agrestis HOM05D006364 ORTHO05D007968 6.3e-13 77.4 84 44.0
Pp3c26_11720 Physcomitrium patens HOM05D006364 ORTHO05D007968 6.3e-13 77.4 83 41.0
BraA01t03642Z Brassica rapa HOM05D006364 ORTHO05D007968 8.3e-13 77.0 72 56.9
Cfa015704 Carpinus fangiana HOM05D006364 ORTHO05D007968 5.4e-12 74.3 65 63.1
A01p35610 Brassica napus HOM05D006364 ORTHO05D007968 1.2e-11 73.2 72 54.2
SalBow3G2548 Salvia bowleyana HOM05D006364 ORTHO05D007968 1.0e-07 60.1 62 45.2
MCO05G593 Micromonas commoda HOM05D006364 ORTHO05D007968 4.0e-07 58.2 71 39.4
Cre14.g626250 Chlamydomonas reinhardtii HOM05D006364 ORTHO05D007968 2.0e-06 55.8 67 40.3
Ciclev10027020m.g Citrus clementina HOM05D006364 ORTHO05D007968 5.7e-06 54.3 135 36.3


User provided reference genes

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