Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 1.7e-119 432.6 206 100.0
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 3.9e-111 404.8 206 94.2
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 6.2e-109 397.5 202 94.1
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 2.4e-97 359.0 205 83.9
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 9.3e-97 357.1 204 83.8
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 9.3e-97 357.1 205 84.9
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 2.7e-96 355.5 206 84.5
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 4.6e-96 354.8 207 82.1
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 6.0e-96 354.4 204 84.3
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 2.3e-95 352.4 205 80.5
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 3.0e-95 352.1 204 82.8
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 3.9e-95 351.7 205 82.9
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 8.7e-95 350.5 206 83.5
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 1.1e-94 350.1 205 80.5
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 1.1e-94 350.1 206 82.0
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 1.1e-94 350.1 205 82.9
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 1.5e-94 349.7 204 83.3
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 1.9e-94 349.4 204 82.8
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 1.9e-94 349.4 204 82.8
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 1.9e-94 349.4 205 82.4
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 3.3e-94 348.6 204 82.4
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 3.3e-94 348.6 202 85.1
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 5.6e-94 347.8 204 82.4
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 5.6e-94 347.8 204 82.4
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 7.4e-94 347.4 204 81.9
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 9.6e-94 347.1 205 82.9
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 9.6e-94 347.1 205 78.5
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 2.8e-93 345.5 205 82.4
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 6.2e-93 344.4 205 79.0
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 6.2e-93 344.4 208 80.3
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 8.1e-93 344.0 205 80.5
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 1.1e-92 343.6 208 79.3
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 1.1e-92 343.6 204 80.4
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 1.4e-92 343.2 205 80.5
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 3.1e-92 342.0 209 80.4
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 3.1e-92 342.0 206 81.6
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 4.0e-92 341.7 206 80.1
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 4.0e-92 341.7 205 81.0
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 5.3e-92 341.3 217 78.3
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 6.9e-92 340.9 205 82.0
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 9.0e-92 340.5 206 78.6
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 9.0e-92 340.5 202 80.2
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 9.0e-92 340.5 204 81.9
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 1.2e-91 340.1 205 79.5
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 1.5e-91 339.7 202 79.7
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 2.6e-91 339.0 204 78.9
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 2.6e-91 339.0 206 79.1
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 3.4e-91 338.6 202 79.7
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 4.5e-91 338.2 208 78.4
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 7.6e-91 337.4 209 78.5
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 7.6e-91 337.4 200 80.5
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 1.3e-90 336.7 209 78.0
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 1.3e-90 336.7 209 77.0
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 1.3e-90 336.7 205 80.5
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 1.3e-90 336.7 202 79.7
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 1.7e-90 336.3 201 79.6
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 1.7e-90 336.3 200 80.5
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 1.7e-90 336.3 200 80.5
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 1.7e-90 336.3 205 79.0
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 2.2e-90 335.9 201 78.6
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 2.2e-90 335.9 203 77.8
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 3.8e-90 335.1 202 80.2
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 4.9e-90 334.7 205 80.0
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 6.4e-90 334.3 205 78.5
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 8.4e-90 334.0 201 78.1
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 1.4e-89 333.2 211 76.8
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 2.4e-89 332.4 200 80.5
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 4.2e-89 331.6 208 76.4
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 7.1e-89 330.9 203 77.8
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 9.3e-89 330.5 204 77.9
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 1.2e-88 330.1 207 77.3
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 1.2e-88 330.1 209 77.0
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 1.2e-88 330.1 202 76.7
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.2e-88 330.1 200 79.5
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 2.1e-88 329.3 209 76.6
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 2.1e-88 329.3 206 75.2
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 2.7e-88 328.9 204 78.9
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 2.7e-88 328.9 205 75.6
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 6.0e-88 327.8 201 81.1
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 1.3e-87 326.6 203 78.3
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 1.3e-87 326.6 203 78.3
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 1.3e-87 326.6 200 79.5
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 1.8e-87 326.2 204 77.9
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 2.3e-87 325.9 201 77.6
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 6.7e-87 324.3 204 76.5
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 4.3e-86 321.6 202 78.2
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 9.6e-86 320.5 207 74.4
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 9.6e-86 320.5 231 68.8
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 9.6e-86 320.5 199 76.4
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.3e-85 320.1 202 74.3
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 1.6e-85 319.7 204 76.5
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 2.1e-85 319.3 199 75.9
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.1e-84 317.0 202 73.3
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 1.8e-84 316.2 195 76.9
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 5.3e-84 314.7 202 73.8
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 5.8e-83 311.2 202 73.3
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 1.3e-82 310.1 202 73.3
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 1.3e-82 310.1 202 73.3
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 9.7e-78 293.9 184 77.7
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 2.8e-77 292.4 204 73.0
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 2.4e-76 289.3 174 82.2
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 3.0e-71 272.3 204 63.2
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 2.5e-70 269.2 200 66.0
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 4.3e-70 268.5 164 79.3
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 1.3e-69 266.9 202 67.3
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 3.7e-69 265.4 159 76.7
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 5.5e-65 251.5 205 57.6
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 7.2e-65 251.1 204 60.8
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 9.4e-65 250.8 204 60.8
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 3.9e-63 245.4 148 79.7
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 5.1e-63 245.0 201 59.2
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 6.7e-63 244.6 162 69.1
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 7.4e-62 241.1 203 58.1
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 6.9e-60 234.6 205 57.1
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 7.2e-57 224.6 146 72.6
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 9.4e-57 224.2 198 58.1
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 3.6e-56 222.2 130 82.3
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 4.1e-52 208.8 124 76.6
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 6.5e-50 201.4 147 70.7
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 7.2e-49 198.0 147 70.1
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 4.7e-48 195.3 119 74.8
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 6.1e-48 194.9 119 74.8
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 3.5e-43 179.1 163 57.7
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 2.9e-42 176.0 98 81.6
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 3.7e-37 159.1 164 48.2
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 3.3e-33 146.0 202 42.1
C02p05330 Brassica napus HOM05D005624 ORTHO05D006896 2.1e-32 143.3 101 72.3
CAN.G282.51 Capsicum annuum HOM05D005624 ORTHO05D006896 1.1e-28 131.0 206 42.7
Cc10_g16310 Coffea canephora HOM05D005624 ORTHO05D006896 1.0e-23 114.4 76 75.0
CSS0031660 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 8.9e-23 111.3 102 59.8
Cc08_g00010 Coffea canephora HOM05D005624 ORTHO05D006896 8.9e-23 111.3 76 69.7
SEGI_14660 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 1.7e-21 107.1 60 75.0
Cc06_g22650 Coffea canephora HOM05D005624 ORTHO05D006896 2.0e-19 100.1 76 68.4
Dinv02968 Davidia involucrata HOM05D005624 ORTHO05D006896 2.2e-13 80.1 37 97.3
Os09g0512900 Oryza sativa ssp. japonica HOM05D005624 ORTHO05D006896 4.3e-09 65.9 38 81.6
Lalb_Chr05g0228961 Lupinus albus HOM05D005624 ORTHO05D006896 9.5e-09 64.7 37 78.4
Lsat_1_v5_gn_4_78441 Lactuca sativa HOM05D005624 ORTHO05D006896 4.7e-08 62.4 41 70.7
SEGI_32969 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 5.2e-07 58.9 33 81.8


User provided reference genes

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