Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 6.8e-80 300.4 135 100.0
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 2.2e-70 268.9 135 85.9
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 3.1e-69 265.0 135 85.9
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 2.6e-63 245.4 135 77.8
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 4.4e-63 244.6 135 79.3
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 7.5e-63 243.8 135 78.5
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 1.8e-61 239.2 134 76.1
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 2.7e-60 235.3 135 74.8
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 7.8e-60 233.8 135 73.3
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 1.7e-59 232.6 148 72.3
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 2.3e-59 232.3 135 74.1
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 3.0e-59 231.9 135 73.3
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 3.9e-59 231.5 135 73.3
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 6.6e-59 230.7 135 73.3
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 8.6e-59 230.3 135 77.0
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 1.1e-58 229.9 135 72.6
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 1.5e-58 229.6 147 70.7
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 3.3e-58 228.4 135 73.3
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 5.6e-58 227.6 135 72.6
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 1.6e-57 226.1 153 66.0
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 2.1e-57 225.7 149 69.8
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 2.1e-57 225.7 135 72.6
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 4.7e-57 224.6 152 67.1
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 8.0e-57 223.8 135 72.6
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 8.0e-57 223.8 135 73.3
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 8.0e-57 223.8 130 76.2
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.0e-56 223.4 150 68.7
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 1.4e-56 223.0 150 66.0
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 1.4e-56 223.0 153 64.1
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 1.4e-56 223.0 153 64.1
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 1.8e-56 222.6 135 72.6
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 1.8e-56 222.6 147 67.3
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 1.8e-56 222.6 135 70.4
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 2.3e-56 222.2 135 72.6
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 2.3e-56 222.2 145 66.9
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 2.3e-56 222.2 132 74.2
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 3.1e-56 221.9 135 72.6
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 4.0e-56 221.5 135 69.6
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 5.2e-56 221.1 145 68.3
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 6.8e-56 220.7 135 71.9
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 1.2e-55 219.9 136 72.8
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 1.2e-55 219.9 136 72.8
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 1.2e-55 219.9 136 72.8
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 1.2e-55 219.9 135 70.4
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 1.2e-55 219.9 148 66.9
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 1.5e-55 219.5 135 70.4
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.5e-55 219.5 130 75.4
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 2.0e-55 219.2 130 70.0
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 2.0e-55 219.2 153 64.1
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 2.6e-55 218.8 146 65.1
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 3.4e-55 218.4 135 69.6
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 4.4e-55 218.0 135 71.1
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 4.4e-55 218.0 135 71.1
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 4.4e-55 218.0 135 68.9
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 4.4e-55 218.0 159 61.6
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 7.5e-55 217.2 159 62.9
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 9.8e-55 216.9 135 71.9
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 1.3e-54 216.5 135 71.1
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 1.3e-54 216.5 135 71.1
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.3e-54 216.5 135 68.1
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 1.3e-54 216.5 130 73.1
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 1.7e-54 216.1 135 70.4
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.7e-54 216.1 130 74.6
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 2.9e-54 215.3 133 71.4
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 4.9e-54 214.5 137 68.6
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 4.9e-54 214.5 137 68.6
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 4.9e-54 214.5 137 68.6
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 6.4e-54 214.2 135 69.6
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 8.3e-54 213.8 126 75.4
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 8.3e-54 213.8 136 70.6
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 8.3e-54 213.8 135 70.4
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 1.1e-53 213.4 122 74.6
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 1.1e-53 213.4 122 73.0
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 1.1e-53 213.4 144 66.0
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 1.4e-53 213.0 135 68.9
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 1.9e-53 212.6 133 69.9
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 1.9e-53 212.6 122 73.8
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 1.9e-53 212.6 127 69.3
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 2.4e-53 212.2 148 62.8
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 3.2e-53 211.8 148 63.5
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 7.0e-53 210.7 122 70.5
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 1.2e-52 209.9 144 63.2
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 1.2e-52 209.9 150 62.7
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.7e-52 208.8 153 63.4
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 4.6e-52 208.0 122 73.0
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 4.6e-52 208.0 133 69.9
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 4.6e-52 208.0 145 62.1
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 7.8e-52 207.2 158 59.5
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 7.8e-52 207.2 133 69.9
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.7e-51 206.1 135 68.1
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 2.3e-51 205.7 150 60.7
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 3.9e-51 204.9 121 74.4
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 5.0e-51 204.5 138 68.1
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 5.0e-51 204.5 154 59.1
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 8.6e-51 203.8 154 59.1
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 4.3e-50 201.4 142 65.5
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 5.6e-50 201.1 122 67.2
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 7.3e-50 200.7 133 65.4
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 1.2e-49 199.9 122 68.0
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 2.1e-49 199.1 126 69.0
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 1.4e-48 196.4 128 67.2
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 6.8e-48 194.1 130 66.9
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 2.0e-47 192.6 143 62.2
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 2.6e-47 192.2 124 68.5
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 2.9e-46 188.7 150 56.0
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 7.1e-45 184.1 108 70.4
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 7.1e-45 184.1 108 70.4
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 2.7e-44 182.2 154 57.8
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 1.6e-41 172.9 105 73.3
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 8.1e-41 170.6 159 52.2
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.2e-39 166.8 117 61.5
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 1.2e-39 166.8 136 56.6
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 2.0e-39 166.0 123 57.7
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 9.9e-39 163.7 173 48.6
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 8.6e-35 150.6 124 53.2
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 2.5e-34 149.1 123 50.4
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 5.6e-34 147.9 146 50.7
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 2.1e-28 129.4 87 63.2
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 8.7e-27 124.0 72 75.0
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 5.8e-23 111.3 59 81.4
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 8.4e-22 107.5 58 77.6
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 6.9e-16 87.8 114 43.9
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 6.9e-16 87.8 105 47.6
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 3.4e-15 85.5 74 50.0
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 9.9e-15 84.0 53 66.0
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 4.9e-14 81.6 81 49.4
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 7.1e-13 77.8 80 47.5
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 9.3e-13 77.4 80 48.8
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 1.2e-12 77.0 46 71.7
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 1.0e-11 73.9 43 69.8
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 1.3e-11 73.6 79 41.8
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 2.3e-11 72.8 111 38.7
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 3.3e-10 68.9 102 39.2
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 5.6e-10 68.2 75 46.7
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 1.6e-09 66.6 49 55.1
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 4.8e-09 65.1 47 55.3
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 1.4e-08 63.5 46 56.5
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 1.4e-08 63.5 46 56.5
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 5.3e-08 61.6 47 53.2
SalBow8G3396 Salvia bowleyana HOM05D018271 ORTHO05D007055 4.5e-07 58.5 53 50.9
HPP92_011549 Vanilla planifolia HOM05D005538 ORTHO05D431340 4.9e-06 55.1 49 51.0


User provided reference genes

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