Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 1.7e-31 138.7 67 100.0
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 4.5e-24 114.0 66 84.8
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 4.5e-24 114.0 66 84.8
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 5.8e-24 113.6 66 83.3
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 5.8e-24 113.6 66 83.3
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 5.8e-24 113.6 66 83.3
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 5.8e-24 113.6 66 83.3
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 9.9e-24 112.8 66 83.3
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 1.7e-23 112.1 64 84.4
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 1.7e-23 112.1 65 81.5
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 2.2e-23 111.7 64 84.4
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.2e-23 111.7 66 83.3
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.2e-23 111.7 64 84.4
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 2.2e-23 111.7 64 84.4
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 2.2e-23 111.7 66 83.3
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 3.8e-23 110.9 66 78.8
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.8e-23 110.9 66 80.3
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 6.4e-23 110.2 66 80.3
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 6.4e-23 110.2 66 78.8
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 6.4e-23 110.2 66 80.3
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 6.4e-23 110.2 66 81.8
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.4e-22 109.0 66 80.3
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.4e-22 109.0 66 80.3
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.4e-22 109.0 66 80.3
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.4e-22 109.0 66 80.3
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.4e-22 109.0 64 81.2
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 1.9e-22 108.6 65 81.5
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 1.9e-22 108.6 66 80.3
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 1.9e-22 108.6 66 80.3
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 2.4e-22 108.2 66 78.8
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 3.2e-22 107.8 66 77.3
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 3.2e-22 107.8 66 78.8
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.2e-22 107.8 66 78.8
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 9.3e-22 106.3 66 75.8
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 1.2e-21 105.9 66 74.2
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 1.2e-21 105.9 66 75.8
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.6e-21 105.5 69 76.8
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 2.1e-21 105.1 65 76.9
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 2.1e-21 105.1 66 74.2
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.7e-21 104.8 64 75.0
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 2.7e-21 104.8 66 77.3
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 3.5e-21 104.4 66 77.3
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 3.5e-21 104.4 64 75.0
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 3.5e-21 104.4 66 77.3
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 3.5e-21 104.4 65 76.9
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 4.6e-21 104.0 64 78.1
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 4.6e-21 104.0 64 78.1
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 4.6e-21 104.0 63 77.8
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 4.6e-21 104.0 64 78.1
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 6.0e-21 103.6 66 74.2
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 6.0e-21 103.6 64 76.6
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 6.0e-21 103.6 66 75.8
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 6.0e-21 103.6 64 76.6
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 7.9e-21 103.2 66 74.2
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 1.0e-20 102.8 66 72.7
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.0e-20 102.8 64 75.0
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 1.3e-20 102.4 63 76.2
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 1.3e-20 102.4 64 76.6
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.3e-20 102.4 66 69.7
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 1.8e-20 102.1 66 75.8
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 1.8e-20 102.1 66 75.8
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 1.8e-20 102.1 65 72.3
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 1.8e-20 102.1 64 75.0
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 1.8e-20 102.1 64 73.4
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.3e-20 101.7 63 76.2
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.3e-20 101.7 63 76.2
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 2.3e-20 101.7 62 77.4
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 3.0e-20 101.3 63 76.2
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 3.0e-20 101.3 66 69.7
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 3.0e-20 101.3 64 78.1
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 3.9e-20 100.9 63 76.2
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 3.9e-20 100.9 66 74.2
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 3.9e-20 100.9 64 76.6
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 3.9e-20 100.9 62 75.8
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 5.1e-20 100.5 65 67.7
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 5.1e-20 100.5 65 67.7
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 5.1e-20 100.5 66 71.2
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 6.7e-20 100.1 64 70.3
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 6.7e-20 100.1 64 75.0
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 6.7e-20 100.1 64 73.4
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 8.7e-20 99.8 63 76.2
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 8.7e-20 99.8 64 71.9
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 1.1e-19 99.4 64 73.4
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 1.5e-19 99.0 63 74.6
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.5e-19 99.0 65 70.8
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.9e-19 98.6 63 74.6
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.9e-19 98.6 66 72.7
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 1.9e-19 98.6 66 72.7
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 2.5e-19 98.2 64 71.9
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 4.3e-19 97.4 64 73.4
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 5.6e-19 97.1 63 73.0
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 5.6e-19 97.1 63 74.6
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 9.6e-19 96.3 66 71.2
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 9.6e-19 96.3 66 69.7
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.3e-18 95.9 64 71.9
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 1.6e-18 95.5 64 71.9
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 2.1e-18 95.1 61 70.5
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 2.8e-18 94.7 64 70.3
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 4.8e-18 94.0 63 73.0
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 6.2e-18 93.6 90 55.6
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 6.2e-18 93.6 63 71.4
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 6.2e-18 93.6 74 60.8
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 1.8e-17 92.0 66 68.2
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 1.8e-17 92.0 63 71.4
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 2.4e-17 91.7 63 69.8
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 2.4e-17 91.7 63 69.8
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 2.4e-17 91.7 63 69.8
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 2.4e-17 91.7 63 69.8
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 2.4e-17 91.7 63 69.8
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 3.1e-17 91.3 88 54.5
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.1e-17 91.3 83 59.0
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 3.1e-17 91.3 64 68.8
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 4.0e-17 90.9 63 65.1
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 5.3e-17 90.5 94 51.1
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 6.9e-17 90.1 91 54.9
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 9.0e-17 89.7 61 70.5
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 1.2e-16 89.4 61 65.6
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 1.5e-16 89.0 63 68.3
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 2.0e-16 88.6 66 65.2
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 3.4e-16 87.8 63 63.5
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 4.5e-16 87.4 62 69.4
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 4.5e-16 87.4 62 69.4
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 4.5e-16 87.4 62 69.4
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 4.5e-16 87.4 62 69.4
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 4.5e-16 87.4 62 69.4
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 4.5e-16 87.4 62 69.4
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 4.5e-16 87.4 59 74.6
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 5.8e-16 87.0 63 66.7
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 5.8e-16 87.0 60 63.3
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 7.6e-16 86.7 63 66.7
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 7.6e-16 86.7 63 66.7
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 7.6e-16 86.7 63 66.7
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 7.6e-16 86.7 63 66.7
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 7.6e-16 86.7 46 89.1
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 7.6e-16 86.7 63 66.7
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 9.9e-16 86.3 63 65.1
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.3e-15 85.9 73 63.0
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 1.3e-15 85.9 64 64.1
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.7e-15 85.5 48 83.3
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 2.2e-15 85.1 66 63.6
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 2.2e-15 85.1 66 63.6
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 2.9e-15 84.7 65 63.1
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 8.4e-15 83.2 63 63.5
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 1.9e-14 82.0 47 80.9
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 1.9e-14 82.0 47 80.9
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 3.2e-14 81.3 47 80.9
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 3.2e-14 81.3 47 78.7
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 4.2e-14 80.9 47 76.6
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 4.2e-14 80.9 47 76.6
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 7.1e-14 80.1 48 77.1
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 7.1e-14 80.1 89 47.2
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 2.1e-13 78.6 47 76.6
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 2.1e-13 78.6 47 74.5
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 2.7e-13 78.2 67 61.2
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.7e-13 78.2 48 77.1
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 3.5e-13 77.8 48 72.9
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 3.5e-13 77.8 59 55.9
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 3.5e-13 77.8 65 58.5
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 3.5e-13 77.8 65 58.5
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 4.6e-13 77.4 46 76.1
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 4.6e-13 77.4 48 70.8
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 1.0e-12 76.3 47 74.5
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 2.5e-11 71.6 58 60.3
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 3.3e-11 71.2 64 46.9
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 7.4e-11 70.1 45 71.1
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.6e-10 68.9 45 71.1
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 2.8e-10 68.2 59 47.5
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 3.7e-10 67.8 39 79.5
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 4.8e-10 67.4 45 66.7
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.1e-09 66.2 48 68.8
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.1e-09 66.2 48 68.8
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.1e-09 66.2 38 76.3
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 1.8e-09 65.5 45 66.7
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 1.8e-09 65.5 47 59.6
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 2.4e-09 65.1 57 56.1
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 4.0e-09 64.3 46 60.9
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 4.5e-08 60.8 58 46.6
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 5.8e-08 60.5 34 79.4
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 7.6e-08 60.1 34 85.3
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 8.4e-07 56.6 35 71.4
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 8.4e-07 56.6 33 75.8


User provided reference genes

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