Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1121100 Malus domestica HOM05D006962 ORTHO05D008696 2.6e-99 365.5 203 100.0
Prupe.1G224100 Prunus persica HOM05D006962 ORTHO05D008696 6.6e-47 191.4 213 54.0
RcHm_v2.0_Chr4g0429971 Rosa chinensis HOM05D006962 ORTHO05D008696 5.3e-36 155.2 208 46.2
FvH4_4g23570 Fragaria vesca HOM05D006962 ORTHO05D008696 3.4e-35 152.5 210 46.7
CANSAT01G0828 Cannabis sativa HOM05D006962 ORTHO05D008696 1.8e-31 140.2 225 44.0
CiPaw.05G108100 Carya illinoinensis HOM05D006962 ORTHO05D008696 2.3e-31 139.8 216 44.0
QL03p052240 Quercus lobata HOM05D006962 ORTHO05D008696 3.0e-31 139.4 213 44.1
Cfa009377 Carpinus fangiana HOM05D006962 ORTHO05D008696 5.7e-30 135.2 220 41.8
Ciclev10032798m.g Citrus clementina HOM05D006962 ORTHO05D008696 7.4e-30 134.8 206 41.3
GSVIVG01010505001 Vitis vinifera HOM05D006962 ORTHO05D008696 6.3e-29 131.7 204 40.7
Haze_12436 Corylus avellana HOM05D006962 ORTHO05D008696 3.4e-27 125.9 235 38.7
Nn3g16434 Nelumbo nucifera HOM05D006962 ORTHO05D008696 7.6e-27 124.8 205 42.9
PGR102G1052 Punica granatum HOM05D006962 ORTHO05D008696 8.4e-26 121.3 178 42.1
Gohir.D04G183600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 5.5e-25 118.6 200 40.0
Dinv17575 Davidia involucrata HOM05D006962 ORTHO05D008696 2.1e-24 116.7 214 43.9
CSS0033119 Camellia sinensis var. sinensis HOM05D006962 ORTHO05D008696 4.6e-24 115.5 213 41.3
TAR629G1477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 7.9e-24 114.8 212 40.6
Thecc.02G205200 Theobroma cacao HOM05D006962 ORTHO05D008696 1.0e-23 114.4 206 36.9
Gorai.012G176600 Gossypium raimondii HOM05D006962 ORTHO05D008696 1.3e-23 114.0 200 38.5
Manes.13G010300 Manihot esculenta HOM05D006962 ORTHO05D008696 1.3e-23 114.0 161 41.6
Gohir.A04G140400 Gossypium hirsutum HOM05D006962 ORTHO05D008696 2.3e-23 113.2 201 38.3
Eucgr.B03508 Eucalyptus grandis HOM05D006962 ORTHO05D008696 5.1e-23 112.1 214 40.7
Duzib251G0823 Durio zibethinus HOM05D006962 ORTHO05D008696 8.7e-23 111.3 196 39.3
ClCG06G002190 Citrullus lanatus HOM05D006962 ORTHO05D008696 1.1e-22 110.9 200 38.0
Glyma.18G005200 Glycine max HOM05D006962 ORTHO05D008696 1.1e-22 110.9 198 37.4
Sabra03G0124800 Salix brachista HOM05D006962 ORTHO05D008696 1.1e-22 110.9 198 39.4
TWI75G0385 Tripterygium wilfordii HOM05D006962 ORTHO05D008696 2.5e-22 109.8 206 36.4
Peaxi162Scf00128g01332 Petunia axillaris HOM05D006962 ORTHO05D008696 7.4e-22 108.2 215 34.9
Potri.003G170700 Populus trichocarpa HOM05D006962 ORTHO05D008696 9.7e-22 107.8 203 37.9
Gohir.D02G147600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 3.7e-21 105.9 194 37.6
MELO3C022311.2 Cucumis melo HOM05D006962 ORTHO05D008696 8.2e-21 104.8 200 37.5
Gorai.005G165400 Gossypium raimondii HOM05D006962 ORTHO05D008696 8.2e-21 104.8 194 37.6
Sabra01G0041700 Salix brachista HOM05D000660 ORTHO05D000766 1.1e-20 104.4 191 37.7
Sc14g0009120 Simmondsia chinensis HOM05D006962 ORTHO05D008696 1.1e-20 104.4 206 38.8
THA.LOC104807506 Tarenaya hassleriana HOM05D006962 ORTHO05D008696 1.4e-20 104.0 219 34.2
Ca_16448_v3 Cicer arietinum L. HOM05D006962 ORTHO05D008696 5.3e-20 102.1 195 38.5
Cc11_g17050 Coffea canephora HOM05D006962 ORTHO05D008696 9.0e-20 101.3 215 34.9
TAR636G2109 Trochodendron aralioides HOM05D006962 ORTHO05D008696 9.0e-20 101.3 210 36.7
COL.COLO4_20424 Corchorus olitorius HOM05D006962 ORTHO05D008696 1.5e-19 100.5 204 34.3
MBI07_g11269_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 2.0e-19 100.1 204 36.3
Potri.001G057700 Populus trichocarpa HOM05D006962 ORTHO05D008696 2.0e-19 100.1 189 36.0
CsaV3_6G008260 Cucumis sativus L. HOM05D006962 ORTHO05D008696 2.6e-19 99.8 203 36.0
MBI07_g28246_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 4.5e-19 99.0 204 36.3
Atru.chr11.2343 Acer truncatum HOM05D006962 ORTHO05D008696 5.9e-19 98.6 116 44.8
Gohir.A03G124600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 7.7e-19 98.2 194 36.6
Aqoxy3G01577 Aquilegia oxysepala HOM05D006962 ORTHO05D008696 1.0e-18 97.8 150 40.7
TPR.G17769 Trifolium pratense HOM05D006962 ORTHO05D008696 1.0e-18 97.8 214 34.6
CsaV3_4G003050 Cucumis sativus L. HOM05D006962 ORTHO05D008696 6.5e-18 95.1 192 41.7
arahy.Tifrunner.gnm1.ann1.AWLH2F Arachis hypogaea HOM05D006962 ORTHO05D008696 8.5e-18 94.7 205 33.7
ClCG07G015460 Citrullus lanatus HOM05D006962 ORTHO05D008696 8.5e-18 94.7 187 36.9
Medtr3g085060 Medicago truncatula HOM05D006962 ORTHO05D008696 1.1e-17 94.4 203 34.0
Nitab4.5_0006369g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 1.1e-17 94.4 211 31.8
MSTRG.13306 Avicennia marina HOM05D006962 ORTHO05D008696 1.9e-17 93.6 199 32.7
PGSC0003DMG400034312 Solanum tuberosum HOM05D006962 ORTHO05D008696 2.5e-17 93.2 203 34.5
Actinidia08062 Actinidia chinensis HOM05D006962 ORTHO05D008696 3.2e-17 92.8 162 48.1
VMungo1383G1469 Vigna mungo HOM05D006962 ORTHO05D008696 5.5e-17 92.0 196 34.2
Nitab4.5_0000996g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 1.2e-16 90.9 211 32.2
C07p17910 Brassica napus HOM05D006962 ORTHO05D008696 1.6e-16 90.5 201 31.3
Sopen05g011100 Solanum pennellii HOM05D006962 ORTHO05D008696 1.6e-16 90.5 154 37.0
AUR62028912 Chenopodium quinoa HOM05D006962 ORTHO05D008696 2.1e-16 90.1 160 38.1
Lj6g0020338 Lotus japonicus HOM05D006962 ORTHO05D008696 2.1e-16 90.1 197 32.0
Hund25473 Selenicereus undatus HOM05D006962 ORTHO05D008696 3.6e-16 89.4 192 32.8
Solyc05g015640.3 Solanum lycopersicum HOM05D006962 ORTHO05D008696 3.6e-16 89.4 154 36.4
Psat5g097440 Pisum sativum HOM05D006962 ORTHO05D008696 6.1e-16 88.6 215 32.1
AL1G40700 Arabidopsis lyrata HOM05D006962 ORTHO05D008696 7.9e-16 88.2 202 31.2
AUR62005637 Chenopodium quinoa HOM05D006962 ORTHO05D008696 7.9e-16 88.2 150 38.7
Phvul.001G262900 Phaseolus vulgaris HOM05D006962 ORTHO05D008696 1.0e-15 87.8 198 34.3
Rhsim12G0024900 Rhododendron simsii HOM05D006962 ORTHO05D008696 1.4e-15 87.4 162 38.3
BolC7t42297H Brassica oleracea HOM05D006962 ORTHO05D008696 1.8e-15 87.0 201 30.8
Thhalv10008828m.g Eutrema salsugineum HOM05D006962 ORTHO05D008696 3.0e-15 86.3 199 32.7
Cpa.g.sc43.75 Carica papaya HOM05D006962 ORTHO05D008696 8.8e-15 84.7 119 38.7
BcaC05g26736 Brassica carinata HOM05D006962 ORTHO05D008696 2.5e-14 83.2 162 34.6
BcaNung06812 Brassica carinata HOM05D006962 ORTHO05D008696 3.3e-14 82.8 201 30.8
A09p38640 Brassica napus HOM05D006962 ORTHO05D008696 3.3e-14 82.8 164 34.8
BraA09t39370Z Brassica rapa HOM05D006962 ORTHO05D008696 3.3e-14 82.8 164 34.8
MELO3C032628.2 Cucumis melo HOM05D006962 ORTHO05D008696 4.3e-14 82.4 141 39.0
DCAR_007000 Daucus carota HOM05D006962 ORTHO05D008696 7.4e-14 81.6 187 32.6
Lsat_1_v5_gn_4_641 Lactuca sativa HOM05D006962 ORTHO05D008696 1.3e-13 80.9 198 35.4
HanXRQChr08g0214941 Helianthus annuus HOM05D006962 ORTHO05D008696 2.2e-13 80.1 214 30.8
Lalb_Chr23g0278151 Lupinus albus HOM05D006962 ORTHO05D008696 2.2e-13 80.1 119 41.2
Aa31LG7G9900 Aethionema arabicum HOM05D006962 ORTHO05D008696 2.8e-13 79.7 202 31.2
C05p26000 Brassica napus HOM05D006962 ORTHO05D008696 1.1e-12 77.8 163 34.4
Hma1.2p1_0657F.1_g197165 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 1.1e-12 77.8 111 40.5
Hma1.2p1_0967F.1_g242360 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 1.1e-12 77.8 111 40.5
Ah.03g136040 Amaranthus hybridus HOM05D006962 ORTHO05D008696 1.4e-12 77.4 163 34.4
ECA234G1956 Erigeron canadensis HOM05D006962 ORTHO05D008696 1.8e-12 77.0 95 44.2
Migut.E00010 Erythranthe guttata HOM05D006962 ORTHO05D008696 2.4e-12 76.6 199 28.1
BolC5t31319H Brassica oleracea HOM05D006962 ORTHO05D008696 3.1e-12 76.3 163 33.7
CAN.G1124.2 Capsicum annuum HOM05D006962 ORTHO05D008696 3.1e-12 76.3 150 33.3
SGA_v2.0_scaffold87G27164 Striga asiatica HOM05D006962 ORTHO05D008696 3.1e-12 76.3 108 41.7
CARHR026870 Cardamine hirsuta HOM05D006962 ORTHO05D008696 4.1e-12 75.9 163 33.7
CDE05G3434 Ceratophyllum demersum HOM05D006962 ORTHO05D008696 5.3e-12 75.5 202 29.7
PSO017G7099 Papaver somniferum HOM05D006962 ORTHO05D008696 5.3e-12 75.5 131 36.6
Zm00001eb241800 Zea mays HOM05D006962 ORTHO05D008696 5.3e-12 75.5 193 31.1
BcaC05g26545 Brassica carinata HOM05D006962 ORTHO05D008696 6.9e-12 75.1 163 33.1
Gohir.D03G043133 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.2e-11 74.3 119 39.5
Zm00001eb180910 Zea mays HOM05D006962 ORTHO05D008696 1.2e-11 74.3 127 35.4
ATR0561G196 Amborella trichopoda HOM05D006962 ORTHO05D008696 1.5e-11 73.9 149 34.2
Glyma.11G251800 Glycine max HOM05D006962 ORTHO05D008696 1.5e-11 73.9 103 40.8
PSO478G2808 Papaver somniferum HOM05D006962 ORTHO05D008696 1.5e-11 73.9 131 36.6
A07p11980 Brassica napus HOM05D006962 ORTHO05D008696 3.4e-11 72.8 211 29.4
BraA07t28983Z Brassica rapa HOM05D006962 ORTHO05D008696 4.5e-11 72.4 211 30.3
Carub.0001s2583 Capsella rubella HOM05D006962 ORTHO05D008696 4.5e-11 72.4 207 30.0
Sp1g23540 Schrenkiella parvula HOM05D006962 ORTHO05D008696 4.5e-11 72.4 204 27.9
Sed0011154 Sechium edule HOM05D006962 ORTHO05D008696 1.3e-10 70.9 128 37.5
Gorai.003G044100 Gossypium raimondii HOM05D006962 ORTHO05D008696 1.7e-10 70.5 119 39.5
AT1G27300 Arabidopsis thaliana HOM05D006962 ORTHO05D008696 3.8e-10 69.3 202 28.7
BcaB03g14005 Brassica carinata HOM05D006962 ORTHO05D008696 1.9e-09 67.0 201 27.9
HPP92_023534 Vanilla planifolia HOM05D006962 ORTHO05D008696 7.2e-09 65.1 95 36.8
TAR629G0477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 4.7e-08 62.4 123 34.1
Os02g0509600 Oryza sativa ssp. japonica HOM05D006962 ORTHO05D008696 5.1e-07 58.9 197 30.5
SMO141G0097 Selaginella moellendorffii HOM05D002663 ORTHO05D021316 1.1e-06 57.8 96 30.2


User provided reference genes

Program Settings