Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1114400 Malus domestica HOM05D002893 ORTHO05D003387 2.1e-25 118.2 59 100.0
MD16G1115000 Malus domestica HOM05D002893 ORTHO05D003387 2.2e-22 108.2 58 91.4
Prupe.1G232000 Prunus persica HOM05D002893 ORTHO05D003387 7.2e-18 93.2 56 78.6
MD13G1115300 Malus domestica HOM05D002893 ORTHO05D003387 9.4e-18 92.8 56 76.8
RcHm_v2.0_Chr4g0430901 Rosa chinensis HOM05D002893 ORTHO05D003387 5.1e-16 87.0 56 75.0
Lj6A823T55 Lonicera japonica HOM05D002893 ORTHO05D003387 1.5e-15 85.5 55 72.7
QL03p054522 Quercus lobata HOM05D002893 ORTHO05D003387 2.5e-15 84.7 55 76.4
Cfa009344 Carpinus fangiana HOM05D002893 ORTHO05D003387 3.3e-15 84.3 55 72.7
Atru.chr11.2283 Acer truncatum HOM05D002893 ORTHO05D003387 4.3e-15 84.0 55 70.9
Dinv10981 Davidia involucrata HOM05D002893 ORTHO05D003387 9.7e-15 82.8 55 69.1
TAR371G0635 Trochodendron aralioides HOM05D002893 ORTHO05D003387 9.7e-15 82.8 55 70.9
Prupe.3G302900 Prunus persica HOM05D002893 ORTHO05D003387 1.3e-14 82.4 55 67.3
Cfa007252 Carpinus fangiana HOM05D002893 ORTHO05D003387 1.7e-14 82.0 55 65.5
Ciclev10030770m.g Citrus clementina HOM05D002893 ORTHO05D003387 1.7e-14 82.0 55 69.1
Haze_14840 Corylus avellana HOM05D002893 ORTHO05D003387 1.7e-14 82.0 55 65.5
Gorai.012G088700 Gossypium raimondii HOM05D002893 ORTHO05D003387 1.7e-14 82.0 55 63.6
QL02p071998 Quercus lobata HOM05D002893 ORTHO05D003387 1.7e-14 82.0 55 67.3
Haze_12378 Corylus avellana HOM05D002893 ORTHO05D003387 2.2e-14 81.6 55 70.9
FvH4_4g24120 Fragaria vesca HOM05D002893 ORTHO05D003387 2.2e-14 81.6 56 67.9
FAN17G2054 Fragaria x ananassa HOM05D002893 ORTHO05D003387 2.2e-14 81.6 56 67.9
Gohir.D04G078800 Gossypium hirsutum HOM05D002893 ORTHO05D003387 2.2e-14 81.6 55 63.6
MD09G1014800 Malus domestica HOM05D002893 ORTHO05D003387 2.2e-14 81.6 55 67.3
TAR374G1033 Trochodendron aralioides HOM05D002893 ORTHO05D003387 2.8e-14 81.3 55 70.9
TAR622G0433 Trochodendron aralioides HOM05D002893 ORTHO05D003387 3.7e-14 80.9 56 67.9
FAN12G2589 Fragaria x ananassa HOM05D002893 ORTHO05D003387 4.8e-14 80.5 56 66.1
Nn4g22385 Nelumbo nucifera HOM05D002893 ORTHO05D003387 6.3e-14 80.1 56 67.9
Oeu058769.1 Olea europaea HOM05D002893 ORTHO05D003387 8.2e-14 79.7 55 65.5
Gohir.D09G035300 Gossypium hirsutum HOM05D002893 ORTHO05D003387 1.1e-13 79.3 55 65.5
GSVIVG01001817001 Vitis vinifera HOM05D002893 ORTHO05D003387 1.1e-13 79.3 55 65.5
Actinidia09670 Actinidia chinensis HOM05D002893 ORTHO05D003387 1.4e-13 79.0 55 67.3
EL10Ac6g13460 Beta vulgaris HOM05D002893 ORTHO05D003387 1.4e-13 79.0 55 67.3
CiPaw.03G052900 Carya illinoinensis HOM05D002893 ORTHO05D003387 1.4e-13 79.0 55 63.6
FAN07G1355 Fragaria x ananassa HOM05D002893 ORTHO05D003387 1.4e-13 79.0 56 64.3
Hma1.2p1_1954F.1_g308870 Hydrangea macrophylla HOM05D002893 ORTHO05D003387 1.4e-13 79.0 56 66.1
RcHm_v2.0_Chr2g0174861 Rosa chinensis HOM05D002893 ORTHO05D003387 1.4e-13 79.0 55 63.6
Ah.03g133950 Amaranthus hybridus HOM05D002893 ORTHO05D003387 1.8e-13 78.6 55 67.3
Glyma.16G060400 Glycine max HOM05D002893 ORTHO05D003387 1.8e-13 78.6 56 64.3
Manes.13G016900 Manihot esculenta HOM05D002893 ORTHO05D003387 1.8e-13 78.6 55 69.1
GSVIVG01010363001 Vitis vinifera HOM05D002893 ORTHO05D003387 1.8e-13 78.6 55 67.3
Gohir.A09G034400 Gossypium hirsutum HOM05D002893 ORTHO05D003387 2.4e-13 78.2 55 63.6
Gorai.006G040200 Gossypium raimondii HOM05D002893 ORTHO05D003387 2.4e-13 78.2 55 63.6
TAR629G0823 Trochodendron aralioides HOM05D002893 ORTHO05D003387 2.4e-13 78.2 55 65.5
Dinv25674 Davidia involucrata HOM05D002893 ORTHO05D003387 3.1e-13 77.8 55 63.6
Gohir.A05G340400 Gossypium hirsutum HOM05D002893 ORTHO05D003387 3.1e-13 77.8 55 60.0
Nn3g16524 Nelumbo nucifera HOM05D002893 ORTHO05D003387 3.1e-13 77.8 55 63.6
AUR62005585 Chenopodium quinoa HOM05D002893 ORTHO05D003387 4.1e-13 77.4 55 67.3
AUR62024145 Chenopodium quinoa HOM05D002893 ORTHO05D003387 4.1e-13 77.4 55 67.3
Potri.001G333600 Populus trichocarpa HOM05D002893 ORTHO05D003387 4.1e-13 77.4 55 63.6
PGR142G1592 Punica granatum HOM05D002893 ORTHO05D003387 4.1e-13 77.4 55 63.6
SalBow8G1069 Salvia bowleyana HOM05D002893 ORTHO05D003387 4.1e-13 77.4 56 64.3
MD17G1014900 Malus domestica HOM05D002893 ORTHO05D003387 5.3e-13 77.0 55 61.8
Cpa.g.sc171.35 Carica papaya HOM05D002893 ORTHO05D003387 6.9e-13 76.6 56 58.9
COL.COLO4_12822 Corchorus olitorius HOM05D002893 ORTHO05D003387 6.9e-13 76.6 55 67.3
Aqoxy5G03468 Aquilegia oxysepala HOM05D002893 ORTHO05D003387 9.1e-13 76.3 55 65.5
Dinv33360 Davidia involucrata HOM05D002893 ORTHO05D003387 1.2e-12 75.9 55 61.8
Eucgr.I01662 Eucalyptus grandis HOM05D002893 ORTHO05D003387 1.2e-12 75.9 55 65.5
Lj1g0008810 Lotus japonicus HOM05D002893 ORTHO05D003387 1.2e-12 75.9 56 62.5
MBI11_g06761_MAGBIO Magnolia biondii HOM05D002893 ORTHO05D003387 1.2e-12 75.9 55 60.0
Sabra16G0214900 Salix brachista HOM05D002893 ORTHO05D003387 1.2e-12 75.9 55 63.6
Ah.02g130670 Amaranthus hybridus HOM05D002893 ORTHO05D003387 1.5e-12 75.5 55 63.6
COL.COLO4_08759 Corchorus olitorius HOM05D002893 ORTHO05D003387 1.5e-12 75.5 55 61.8
FvH4_6g53080 Fragaria vesca HOM05D002893 ORTHO05D003387 1.5e-12 75.5 55 61.8
FAN09G3500 Fragaria x ananassa HOM05D002893 ORTHO05D003387 1.5e-12 75.5 55 61.8
FAN14G0374 Fragaria x ananassa HOM05D002893 ORTHO05D003387 1.5e-12 75.5 55 61.8
FAN14G5777 Fragaria x ananassa HOM05D002893 ORTHO05D003387 1.5e-12 75.5 55 61.8
CiPaw.04G034800 Carya illinoinensis HOM05D002893 ORTHO05D003387 2.0e-12 75.1 55 61.8
MELO3C008209.2 Cucumis melo HOM05D002893 ORTHO05D003387 2.0e-12 75.1 55 61.8
ECA233G0407 Erigeron canadensis HOM05D002893 ORTHO05D003387 2.0e-12 75.1 55 61.8
Thecc.04G030500 Theobroma cacao HOM05D002893 ORTHO05D003387 2.0e-12 75.1 56 57.1
TPR.G25633 Trifolium pratense HOM05D002893 ORTHO05D003387 2.0e-12 75.1 56 62.5
CSS0014051 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D003387 2.6e-12 74.7 55 65.5
HanXRQChr12g0372301 Helianthus annuus HOM05D002893 ORTHO05D003387 2.6e-12 74.7 55 61.8
Ciclev10014385m.g Citrus clementina HOM05D002893 ORTHO05D003387 3.4e-12 74.3 55 63.6
FAN02G1523 Fragaria x ananassa HOM05D002893 ORTHO05D003387 3.4e-12 74.3 55 61.8
Glyma.18G008500 Glycine max HOM05D002893 ORTHO05D003387 3.4e-12 74.3 56 57.1
CSS0016438 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D003387 4.5e-12 73.9 55 61.8
Duzib147G0805 Durio zibethinus HOM05D002893 ORTHO05D003387 4.5e-12 73.9 55 56.4
Duzib187G1811 Durio zibethinus HOM05D002893 ORTHO05D003387 4.5e-12 73.9 55 60.0
Sed0012732 Sechium edule HOM05D002893 ORTHO05D003387 4.5e-12 73.9 55 60.0
Sc03g0006770 Simmondsia chinensis HOM05D002893 ORTHO05D003387 4.5e-12 73.9 55 63.6
arahy.Tifrunner.gnm1.ann1.S4Z9Q7 Arachis hypogaea HOM05D002893 ORTHO05D003387 5.9e-12 73.6 56 60.7
arahy.Tifrunner.gnm1.ann1.Y67UYZ Arachis hypogaea HOM05D002893 ORTHO05D003387 5.9e-12 73.6 56 55.4
CANSAT64G1237 Cannabis sativa HOM05D002893 ORTHO05D003387 5.9e-12 73.6 56 58.9
Duzib264G0096 Durio zibethinus HOM05D002893 ORTHO05D003387 5.9e-12 73.6 55 58.2
Migut.H00011 Erythranthe guttata HOM05D002893 ORTHO05D003387 5.9e-12 73.6 54 63.0
Phvul.001G096200 Phaseolus vulgaris HOM05D002893 ORTHO05D003387 5.9e-12 73.6 56 60.7
CSS0025114 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D003387 7.7e-12 73.2 55 63.6
Glyma.19G086700 Glycine max HOM05D002893 ORTHO05D003387 7.7e-12 73.2 55 61.8
Gohir.A01G161000 Gossypium hirsutum HOM05D002893 ORTHO05D003387 7.7e-12 73.2 55 63.6
Gohir.D01G148500 Gossypium hirsutum HOM05D002893 ORTHO05D003387 7.7e-12 73.2 55 63.6
Gorai.002G184300 Gossypium raimondii HOM05D002893 ORTHO05D003387 7.7e-12 73.2 55 63.6
Sp6g29800 Schrenkiella parvula HOM05D002893 ORTHO05D003387 7.7e-12 73.2 56 57.1
Thecc.02G275700 Theobroma cacao HOM05D002893 ORTHO05D003387 7.7e-12 73.2 55 63.6
DCAR_007012 Daucus carota HOM05D002893 ORTHO05D003387 1.0e-11 72.8 56 58.9
Gorai.002G193200 Gossypium raimondii HOM05D002893 ORTHO05D003387 1.0e-11 72.8 55 63.6
PGR119G0470 Punica granatum HOM05D002893 ORTHO05D003387 1.0e-11 72.8 56 62.5
TWI75G1758 Tripterygium wilfordii HOM05D002893 ORTHO05D003387 1.0e-11 72.8 55 61.8
THA.LOC104802381 Tarenaya hassleriana HOM05D002893 ORTHO05D003387 1.3e-11 72.4 56 62.5
AT5G14230 Arabidopsis thaliana HOM05D002893 ORTHO05D003387 1.7e-11 72.0 56 58.9
Duzib251G0408 Durio zibethinus HOM05D002893 ORTHO05D003387 1.7e-11 72.0 55 63.6
Thhalv10012767m.g Eutrema salsugineum HOM05D002893 ORTHO05D003387 1.7e-11 72.0 56 58.9
Lju41A50T55 Lonicera japonica HOM05D002893 ORTHO05D003387 1.7e-11 72.0 51 60.8
Potri.010G057300 Populus trichocarpa HOM05D002893 ORTHO05D003387 1.7e-11 72.0 55 60.0
ClCG11G006960 Citrullus lanatus HOM05D002893 ORTHO05D003387 2.2e-11 71.6 55 60.0
Medtr7g031370 Medicago truncatula HOM05D002893 ORTHO05D003387 2.2e-11 71.6 56 58.9
Hund10840 Selenicereus undatus HOM05D002893 ORTHO05D003387 2.2e-11 71.6 55 61.8
MSTRG.3091 Avicennia marina HOM05D002893 ORTHO05D003387 2.9e-11 71.2 55 61.8
Ca_16477_v3 Cicer arietinum L. HOM05D002893 ORTHO05D003387 2.9e-11 71.2 57 52.6
Ca_29987_v3 Cicer arietinum L. HOM05D002893 ORTHO05D003387 2.9e-11 71.2 57 52.6
CsaV3_6G001110 Cucumis sativus L. HOM05D002893 ORTHO05D003387 2.9e-11 71.2 55 56.4
Nitab4.5_0002887g0120 Nicotiana tabacum HOM05D002893 ORTHO05D003387 2.9e-11 71.2 55 60.0
Atru.chr6.2519 Acer truncatum HOM05D002893 ORTHO05D003387 3.8e-11 70.9 55 61.8
arahy.Tifrunner.gnm1.ann1.53Z9F6 Arachis hypogaea HOM05D002893 ORTHO05D003387 3.8e-11 70.9 56 58.9
CARHR199110 Cardamine hirsuta HOM05D002893 ORTHO05D003387 5.0e-11 70.5 56 57.1
Migut.E00032 Erythranthe guttata HOM05D002893 ORTHO05D003387 5.0e-11 70.5 56 60.7
arahy.Tifrunner.gnm1.ann1.4E1D17 Arachis hypogaea HOM05D002893 ORTHO05D003387 6.5e-11 70.1 56 53.6
Nitab4.5_0009757g0010 Nicotiana tabacum HOM05D002893 ORTHO05D003387 6.5e-11 70.1 55 56.4
PSO063G5911 Papaver somniferum HOM05D002893 ORTHO05D003387 6.5e-11 70.1 55 60.0
PSO782G1898 Papaver somniferum HOM05D002893 ORTHO05D003387 6.5e-11 70.1 55 60.0
Lalb_Chr14g0363081 Lupinus albus HOM05D002893 ORTHO05D003387 8.5e-11 69.7 56 57.1
Oeu049154.1 Olea europaea HOM05D002893 ORTHO05D003387 8.5e-11 69.7 56 62.5
C02p06620 Brassica napus HOM05D002893 ORTHO05D003387 1.4e-10 68.9 56 55.4
Lsat_1_v5_gn_8_149580 Lactuca sativa HOM05D002893 ORTHO05D003387 1.4e-10 68.9 55 58.2
Psat5g095720 Pisum sativum HOM05D002893 ORTHO05D003387 1.4e-10 68.9 55 52.7
AUR62030703 Chenopodium quinoa HOM05D002893 ORTHO05D003387 1.9e-10 68.6 55 58.2
AUR62036343 Chenopodium quinoa HOM05D002893 ORTHO05D003387 1.9e-10 68.6 55 56.4
Manes.15G158400 Manihot esculenta HOM05D002893 ORTHO05D003387 1.9e-10 68.6 56 50.0
Manes.17G105600 Manihot esculenta HOM05D002893 ORTHO05D003387 1.9e-10 68.6 55 54.5
Phvul.001G260100 Phaseolus vulgaris HOM05D002893 ORTHO05D003387 1.9e-10 68.6 56 51.8
Psat3g177400 Pisum sativum HOM05D002893 ORTHO05D003387 1.9e-10 68.6 56 57.1
Ah.12g059400 Amaranthus hybridus HOM05D002893 ORTHO05D003387 3.2e-10 67.8 55 60.0
BcaB01g05300 Brassica carinata HOM05D002893 ORTHO05D003387 3.2e-10 67.8 56 55.4
BcaB01g06338 Brassica carinata HOM05D002893 ORTHO05D003387 3.2e-10 67.8 56 53.6
C03p07490 Brassica napus HOM05D002893 ORTHO05D003387 3.2e-10 67.8 56 55.4
BolC3t13250H Brassica oleracea HOM05D002893 ORTHO05D003387 3.2e-10 67.8 56 55.4
DCAR_011311 Daucus carota HOM05D002893 ORTHO05D003387 3.2e-10 67.8 55 52.7
Cc11_g16700 Coffea canephora HOM05D002893 ORTHO05D003387 4.2e-10 67.4 55 61.8
C09p62930 Brassica napus HOM05D002893 ORTHO05D003387 5.5e-10 67.0 56 50.0
BolC9t59130H Brassica oleracea HOM05D002893 ORTHO05D003387 5.5e-10 67.0 56 50.0
CANSAT01G0501 Cannabis sativa HOM05D002893 ORTHO05D003387 5.5e-10 67.0 58 62.1
HanXRQChr17g0550161 Helianthus annuus HOM05D002893 ORTHO05D003387 5.5e-10 67.0 58 55.2
Lalb_Chr02g0157821 Lupinus albus HOM05D002893 ORTHO05D003387 5.5e-10 67.0 56 51.8
SalBow1G0141 Salvia bowleyana HOM05D002893 ORTHO05D003387 5.5e-10 67.0 55 58.2
SalBow1G0350 Salvia bowleyana HOM05D002893 ORTHO05D003387 5.5e-10 67.0 55 58.2
Cc07_g00610 Coffea canephora HOM05D002893 ORTHO05D003387 7.2e-10 66.6 55 50.9
BcaB08g36968 Brassica carinata HOM05D002893 ORTHO05D003387 1.2e-09 65.9 56 50.0
BcaC03g13510 Brassica carinata HOM05D002893 ORTHO05D003387 1.2e-09 65.9 56 51.8
BcaNung03174 Brassica carinata HOM05D002893 ORTHO05D003387 1.2e-09 65.9 56 51.8
CSS0024252 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D003387 1.2e-09 65.9 55 56.4
CSS0027251 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D003387 1.2e-09 65.9 55 56.4
BcaC04g19051 Brassica carinata HOM05D002893 ORTHO05D003387 1.6e-09 65.5 56 48.2
A03p06490 Brassica napus HOM05D002893 ORTHO05D003387 1.6e-09 65.5 56 55.4
BraA03t09981Z Brassica rapa HOM05D002893 ORTHO05D003387 1.6e-09 65.5 56 55.4
HanXRQChr15g0474971 Helianthus annuus HOM05D002893 ORTHO05D003387 2.1e-09 65.1 58 56.9
Solyc02g093950.3 Solanum lycopersicum HOM05D002893 ORTHO05D003387 2.1e-09 65.1 55 54.5
vmacro05938 Vaccinium macrocarpon HOM05D002893 ORTHO05D003387 2.1e-09 65.1 55 56.4
VMungo1383G2167 Vigna mungo HOM05D002893 ORTHO05D003387 2.1e-09 65.1 56 50.0
CSS0023379 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D003387 2.7e-09 64.7 55 56.4
CSS0036153 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D003387 2.7e-09 64.7 55 56.4
CAN.G473.80 Capsicum annuum HOM05D002893 ORTHO05D003387 2.7e-09 64.7 55 52.7
Rhsim10G0008700 Rhododendron simsii HOM05D002893 ORTHO05D003387 2.7e-09 64.7 56 51.8
Actinidia38213 Actinidia chinensis HOM05D002893 ORTHO05D003387 3.6e-09 64.3 55 58.2
TPR.G21785 Trifolium pratense HOM05D002893 ORTHO05D003387 3.6e-09 64.3 56 48.2
A10p24240 Brassica napus HOM05D002893 ORTHO05D003387 4.7e-09 63.9 56 51.8
BraA10t44489Z Brassica rapa HOM05D002893 ORTHO05D003387 4.7e-09 63.9 56 51.8
Sopen02g038600 Solanum pennellii HOM05D002893 ORTHO05D003387 4.7e-09 63.9 55 52.7
SGA_v2.0_scaffold18G08220 Striga asiatica HOM05D002893 ORTHO05D003387 4.7e-09 63.9 55 56.4
Medtr3g085630 Medicago truncatula HOM05D002893 ORTHO05D003387 1.0e-08 62.8 55 49.1
ECA238G2231 Erigeron canadensis HOM05D002893 ORTHO05D003387 1.8e-08 62.0 56 55.4
Peaxi162Scf00420g00443 Petunia axillaris HOM05D002893 ORTHO05D003387 1.8e-08 62.0 55 50.9
PGSC0003DMG400020219 Solanum tuberosum HOM05D002893 ORTHO05D003387 1.8e-08 62.0 55 50.9
ATR0686G058 Amborella trichopoda HOM05D002893 ORTHO05D003387 2.3e-08 61.6 56 51.8
CDE09G0940 Ceratophyllum demersum HOM05D002893 ORTHO05D003387 2.3e-08 61.6 55 49.1
CDE02G0478 Ceratophyllum demersum HOM05D002893 ORTHO05D003387 3.0e-08 61.2 55 50.9
HanXRQChr14g0450891 Helianthus annuus HOM05D002893 ORTHO05D003387 3.0e-08 61.2 56 53.6
SEGI_23234 Sequoiadendron giganteum HOM05D002893 ORTHO05D003387 3.0e-08 61.2 52 55.8
SGA_v2.0_scaffold87G27135 Striga asiatica HOM05D002893 ORTHO05D008562 3.0e-08 61.2 55 54.5
AagrBONN_evm.TU.Sc2ySwM_117.2189 Anthoceros agrestis HOM05D002893 ORTHO05D003387 5.1e-08 60.5 57 45.6
Sc04g0009980 Simmondsia chinensis HOM05D002893 ORTHO05D003387 1.1e-07 59.3 55 54.5
Lsat_1_v5_gn_0_14341 Lactuca sativa HOM05D002893 ORTHO05D003387 1.5e-07 58.9 57 50.9
ECA246G4422 Erigeron canadensis HOM05D002893 ORTHO05D003387 2.0e-07 58.5 57 49.1
Actinidia30889 Actinidia chinensis HOM05D002893 ORTHO05D003387 9.7e-07 56.2 64 45.3
PGR042G3976 Punica granatum HOM05D002893 ORTHO05D003387 2.8e-06 54.7 55 49.1
Eucgr.E01073 Eucalyptus grandis HOM05D002893 ORTHO05D001173 3.7e-06 54.3 55 50.9
Gohir.D01G155900 Gossypium hirsutum HOM05D002893 ORTHO05D003387 4.8e-06 53.9 36 69.4
HPP92_024639 Vanilla planifolia HOM05D002893 ORTHO05D003387 6.3e-06 53.5 51 52.9


User provided reference genes

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