Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1111700 Malus domestica HOM05D006725 ORTHO05D008223 5.8e-95 350.9 181 100.0
MD13G1112100 Malus domestica HOM05D006725 ORTHO05D008223 1.4e-88 329.7 181 94.5
RcHm_v2.0_Chr4g0431131 Rosa chinensis HOM05D006725 ORTHO05D008223 2.6e-74 282.3 182 80.2
Prupe.1G233300 Prunus persica HOM05D006725 ORTHO05D008223 5.7e-74 281.2 186 80.6
FAN12G1259 Fragaria x ananassa HOM05D006725 ORTHO05D008223 5.9e-71 271.2 197 74.6
FAN22G0294 Fragaria x ananassa HOM05D006725 ORTHO05D008223 5.5e-69 264.6 196 73.5
CiPaw.05G115200 Carya illinoinensis HOM05D006725 ORTHO05D008223 7.0e-64 247.7 183 69.9
Dinv14799 Davidia involucrata HOM05D006725 ORTHO05D008223 5.0e-62 241.5 193 66.8
PGR102G0799 Punica granatum HOM05D006725 ORTHO05D008223 5.0e-62 241.5 181 70.2
TWI18G0344 Tripterygium wilfordii HOM05D006725 ORTHO05D008223 1.2e-60 236.9 193 66.8
Medtr3g085720 Medicago truncatula HOM05D006725 ORTHO05D008223 2.7e-60 235.7 166 71.7
Potri.008G105700 Populus trichocarpa HOM05D006725 ORTHO05D008223 6.1e-60 234.6 189 65.6
Ca_16483_v3 Cicer arietinum L. HOM05D006725 ORTHO05D008223 1.0e-59 233.8 186 67.7
TAR374G1568 Trochodendron aralioides HOM05D006725 ORTHO05D008223 2.3e-59 232.6 186 69.4
Aqoxy5G03519 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 3.0e-59 232.3 184 64.1
Cfa009314 Carpinus fangiana HOM05D006725 ORTHO05D008223 5.2e-59 231.5 180 70.0
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 5.2e-59 231.5 191 68.1
Duzib248G0208 Durio zibethinus HOM05D006725 ORTHO05D008223 6.7e-59 231.1 191 67.0
Glyma.11G248100 Glycine max HOM05D006725 ORTHO05D008223 1.5e-58 229.9 166 72.3
TPR.G22435 Trifolium pratense HOM05D006725 ORTHO05D008223 2.0e-58 229.6 185 67.6
Thecc.02G274200 Theobroma cacao HOM05D006725 ORTHO05D008223 2.6e-58 229.2 191 68.1
Haze_12368 Corylus avellana HOM05D006725 ORTHO05D008223 3.3e-58 228.8 213 61.5
CsaV3_2G025320 Cucumis sativus L. HOM05D006725 ORTHO05D008223 4.4e-58 228.4 185 67.0
CSS0023056 Camellia sinensis var. sinensis HOM05D006725 ORTHO05D008223 7.5e-58 227.6 189 62.4
Gohir.D02G152500 Gossypium hirsutum HOM05D006725 ORTHO05D008223 2.2e-57 226.1 183 66.7
Gorai.005G171500 Gossypium raimondii HOM05D006725 ORTHO05D008223 6.3e-57 224.6 183 66.1
Gohir.A03G128700 Gossypium hirsutum HOM05D006725 ORTHO05D008223 8.3e-57 224.2 183 66.1
Actinidia08088 Actinidia chinensis HOM05D006725 ORTHO05D008223 1.1e-56 223.8 193 63.7
Phvul.001G259500 Phaseolus vulgaris HOM05D006725 ORTHO05D008223 1.8e-56 223.0 185 66.5
Lj3g0011418 Lotus japonicus HOM05D006725 ORTHO05D008223 4.1e-56 221.9 180 66.1
arahy.Tifrunner.gnm1.ann1.245RAI Arachis hypogaea HOM05D006725 ORTHO05D008223 5.3e-56 221.5 186 67.2
CANSAT56G1091 Cannabis sativa HOM05D006725 ORTHO05D008223 5.3e-56 221.5 165 69.7
Ciclev10032688m.g Citrus clementina HOM05D006725 ORTHO05D008223 7.0e-56 221.1 185 64.9
ClCG08G017310 Citrullus lanatus HOM05D006725 ORTHO05D008223 3.5e-55 218.8 188 62.8
Nn4g22406 Nelumbo nucifera HOM05D006725 ORTHO05D008223 5.9e-55 218.0 173 64.7
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 7.7e-55 217.6 193 63.2
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 1.3e-54 216.9 191 63.4
Sed0015494 Sechium edule HOM05D006725 ORTHO05D008223 1.7e-54 216.5 185 63.2
PSO063G2169 Papaver somniferum HOM05D006725 ORTHO05D008223 8.5e-54 214.2 195 61.5
PSO782G3390 Papaver somniferum HOM05D006725 ORTHO05D008223 8.5e-54 214.2 190 62.6
HPP92_021374 Vanilla planifolia HOM05D006725 ORTHO05D008223 2.5e-53 212.6 150 66.0
QL03p054759 Quercus lobata HOM05D006725 ORTHO05D008223 5.5e-53 211.5 195 61.5
THA.LOC104825521 Tarenaya hassleriana HOM05D006725 ORTHO05D008223 5.5e-53 211.5 194 62.4
Glyma.18G009100 Glycine max HOM05D006725 ORTHO05D008223 2.1e-52 209.5 181 64.6
arahy.Tifrunner.gnm1.ann1.ZVR9LL Arachis hypogaea HOM05D006725 ORTHO05D008223 2.7e-52 209.1 148 73.0
Aqoxy5G03514 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 3.6e-52 208.8 147 69.4
Manes.13G015700 Manihot esculenta HOM05D006725 ORTHO05D008223 3.0e-51 205.7 159 67.3
Sopen05g009780 Solanum pennellii HOM05D006725 ORTHO05D008223 3.0e-51 205.7 196 57.1
vmacro01086 Vaccinium macrocarpon HOM05D006725 ORTHO05D008223 3.0e-51 205.7 174 59.8
Peaxi162Scf00128g00835 Petunia axillaris HOM05D006725 ORTHO05D008223 4.0e-51 205.3 194 57.2
Rhsim12G0035000 Rhododendron simsii HOM05D006725 ORTHO05D008223 6.8e-51 204.5 220 51.8
Lalb_Chr11g0075681 Lupinus albus HOM05D006725 ORTHO05D008223 2.0e-50 203.0 182 60.4
Solyc05g014650.2 Solanum lycopersicum HOM05D006725 ORTHO05D008223 2.6e-50 202.6 194 57.2
Sabra08G0079700 Salix brachista HOM05D006725 ORTHO05D008223 3.4e-50 202.2 194 58.2
Psat5g094640 Pisum sativum HOM05D006725 ORTHO05D008223 6.3e-49 198.0 162 63.6
Lsat_1_v5_gn_4_2821 Lactuca sativa HOM05D006725 ORTHO05D008223 8.3e-49 197.6 189 58.7
CARHR060190 Cardamine hirsuta HOM05D006725 ORTHO05D008223 4.1e-48 195.3 191 57.1
SalBow2G1482 Salvia bowleyana HOM05D006725 ORTHO05D008223 1.2e-47 193.7 206 53.4
Eucgr.B03461 Eucalyptus grandis HOM05D006725 ORTHO05D008223 1.6e-47 193.4 198 55.6
EL10Ac6g13437 Beta vulgaris HOM05D006725 ORTHO05D008223 2.7e-47 192.6 184 55.4
AL2G26280 Arabidopsis lyrata HOM05D006725 ORTHO05D008223 5.9e-47 191.4 186 56.5
Nitab4.5_0000581g0080 Nicotiana tabacum HOM05D006725 ORTHO05D008223 7.7e-47 191.0 194 55.7
Thhalv10019173m.g Eutrema salsugineum HOM05D006725 ORTHO05D008223 2.3e-46 189.5 191 57.1
Migut.K00702 Erythranthe guttata HOM05D006725 ORTHO05D008223 5.0e-46 188.3 140 61.4
AT1G67620 Arabidopsis thaliana HOM05D006725 ORTHO05D008223 1.9e-45 186.4 180 55.6
HanXRQChr17g0569291 Helianthus annuus HOM05D006725 ORTHO05D008223 4.2e-45 185.3 185 56.2
Carub.0002s1395 Capsella rubella HOM05D006725 ORTHO05D008223 5.5e-45 184.9 192 54.2
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 1.2e-44 183.7 177 57.6
SGA_v2.0_scaffold46G17392 Striga asiatica HOM05D006725 ORTHO05D008223 3.6e-44 182.2 209 50.7
unitig_749.g13304 Utricularia gibba HOM05D006725 ORTHO05D008223 3.6e-44 182.2 133 66.2
DCAR_007015 Daucus carota HOM05D006725 ORTHO05D008223 1.2e-42 177.2 145 60.7
Lj3A1064T102 Lonicera japonica HOM05D006725 ORTHO05D008223 1.5e-42 176.8 187 54.5
ATR0609G130 Amborella trichopoda HOM05D006725 ORTHO05D008223 2.6e-42 176.0 158 57.0
AUR62005570 Chenopodium quinoa HOM05D006725 ORTHO05D008223 7.5e-42 174.5 213 47.9
BolC6t39176H Brassica oleracea HOM05D006725 ORTHO05D008223 3.1e-40 169.1 189 54.5
BcaC08g46171 Brassica carinata HOM05D006725 ORTHO05D008223 1.2e-39 167.2 189 54.5
A07p34140 Brassica napus HOM05D006725 ORTHO05D008223 4.5e-39 165.2 193 51.8
BcaB03g15182 Brassica carinata HOM05D006725 ORTHO05D008223 7.8e-39 164.5 189 52.9
BraA07t31040Z Brassica rapa HOM05D006725 ORTHO05D008223 1.0e-38 164.1 192 52.6
C06p42630 Brassica napus HOM05D006725 ORTHO05D008223 1.7e-38 163.3 189 54.0
Os12g0241100 Oryza sativa ssp. japonica HOM05D006725 ORTHO05D008223 6.6e-38 161.4 138 55.8
Zm00001eb133570 Zea mays HOM05D006725 ORTHO05D008223 8.6e-38 161.0 138 55.1
BraA07t31044Z Brassica rapa HOM05D006725 ORTHO05D008223 4.3e-37 158.7 191 49.2
MELO3C010728.2 Cucumis melo HOM05D006725 ORTHO05D008223 1.2e-36 157.1 131 66.4
GSVIVG01010346001 Vitis vinifera HOM05D006725 ORTHO05D008223 1.6e-36 156.8 106 72.6
Aa31LG4G12010 Aethionema arabicum HOM05D006725 ORTHO05D008223 2.1e-36 156.4 172 52.9
CDE09G0294 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 1.0e-35 154.1 102 74.5
Sc04g0004650 Simmondsia chinensis HOM05D006725 ORTHO05D008223 3.2e-32 142.5 155 51.6
arahy.Tifrunner.gnm1.ann1.GPZA99 Arachis hypogaea HOM05D006725 ORTHO05D008223 4.6e-31 138.7 132 59.1
FvH4_4g24330 Fragaria vesca HOM05D006725 ORTHO05D008223 4.6e-31 138.7 108 72.2
VMungo1383G0611 Vigna mungo HOM05D006725 ORTHO05D008223 4.7e-28 128.6 184 47.3
RcHm_v2.0_Chr7g0198741 Rosa chinensis HOM05D006725 ORTHO05D008223 3.1e-27 125.9 76 80.3
SalBow3G4645 Salvia bowleyana HOM05D006725 ORTHO05D008223 5.2e-27 125.2 80 73.8
Cc11_g16590 Coffea canephora HOM05D006725 ORTHO05D008223 5.8e-26 121.7 80 70.0
Nitab4.5_0000240g0060 Nicotiana tabacum HOM05D006725 ORTHO05D008223 2.2e-25 119.8 86 65.1
RcHm_v2.0_Chr1g0343341 Rosa chinensis HOM05D006725 ORTHO05D008223 1.4e-24 117.1 72 80.6
ECA234G0356 Erigeron canadensis HOM05D006725 ORTHO05D008223 9.2e-24 114.4 82 69.5
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 2.3e-22 109.8 72 72.2
AUR62024160 Chenopodium quinoa HOM05D006725 ORTHO05D008223 1.5e-21 107.1 136 43.4
Actinidia30676 Actinidia chinensis HOM05D006725 ORTHO05D008223 2.8e-20 102.8 101 52.5
CDE02G2623 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 4.7e-20 102.1 98 58.2
MBI08_g41741_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 2.3e-19 99.8 70 67.1
Pp3c8_14070 Physcomitrium patens HOM05D006725 ORTHO05D008223 5.2e-19 98.6 119 37.0
Cpa.g.sc351.2 Carica papaya HOM05D006725 ORTHO05D008223 6.8e-19 98.2 179 36.9
CAN.G1081.11 Capsicum annuum HOM05D006725 ORTHO05D008223 8.9e-19 97.8 103 55.3
CAN.G3094.2 Capsicum annuum HOM05D006725 ORTHO05D008223 8.9e-19 97.8 103 55.3
SMO141G0262 Selaginella moellendorffii HOM05D006725 ORTHO05D008223 3.4e-18 95.9 105 38.1
Atru.chr7.1050 Acer truncatum HOM05D006725 ORTHO05D008223 3.7e-17 92.4 73 63.0
CAN.G1081.12 Capsicum annuum HOM05D006725 ORTHO05D008223 1.4e-16 90.5 71 57.7
CAN.G3094.1 Capsicum annuum HOM05D006725 ORTHO05D008223 1.4e-16 90.5 71 57.7
Oeu041686.1 Olea europaea HOM05D006725 ORTHO05D008223 1.9e-16 90.1 105 48.6
CBR_g17596 Chara braunii HOM05D006725 ORTHO05D008223 5.4e-16 88.6 106 36.8
MBI08_g41742_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 3.9e-14 82.4 90 51.1
RcHm_v2.0_Chr1g0366581 Rosa chinensis HOM05D006725 ORTHO05D008223 6.6e-14 81.6 52 78.8
Hma1.2p1_0167F.1_g073800 Hydrangea macrophylla HOM05D006725 ORTHO05D008223 8.6e-14 81.3 51 68.6
RcHm_v2.0_Chr3g0456071 Rosa chinensis HOM05D006725 ORTHO05D008223 1.1e-13 80.9 51 78.4
RcHm_v2.0_Chr7g0183971 Rosa chinensis HOM05D006725 ORTHO05D008223 1.5e-13 80.5 52 76.9
MCO03G004 Micromonas commoda HOM05D006725 ORTHO05D008223 1.5e-10 70.5 113 30.1
SpUn0282_0010 Schrenkiella parvula HOM05D006725 ORTHO05D008223 7.1e-08 61.6 55 56.4


User provided reference genes

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