Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 7.9e-112 407.1 208 100.0
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 3.3e-110 401.7 208 98.1
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 1.0e-106 390.2 208 93.8
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 1.3e-106 389.8 208 94.2
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 2.2e-106 389.0 207 93.7
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 3.8e-106 388.3 208 92.8
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 3.8e-106 388.3 208 93.3
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 5.0e-106 387.9 208 92.8
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 5.0e-106 387.9 208 92.8
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 6.5e-106 387.5 207 92.8
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 6.5e-106 387.5 208 92.8
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 8.5e-106 387.1 208 92.3
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 8.5e-106 387.1 208 93.3
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 1.1e-105 386.7 208 92.8
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 1.1e-105 386.7 208 93.3
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.1e-105 386.7 208 93.3
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.1e-105 386.7 208 92.8
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.4e-105 386.3 208 92.8
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.4e-105 386.3 208 92.8
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 1.4e-105 386.3 208 93.3
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 1.9e-105 386.0 206 92.7
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 1.9e-105 386.0 206 92.7
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 2.5e-105 385.6 207 92.8
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 3.2e-105 385.2 208 91.8
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 4.2e-105 384.8 208 92.8
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 7.2e-105 384.0 208 92.8
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 9.4e-105 383.6 208 91.3
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 1.2e-104 383.3 208 91.3
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 1.6e-104 382.9 208 91.3
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 2.1e-104 382.5 208 91.3
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 2.1e-104 382.5 208 92.3
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 2.7e-104 382.1 208 91.3
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 3.6e-104 381.7 208 91.8
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 4.6e-104 381.3 208 91.3
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 6.1e-104 380.9 206 92.2
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 7.9e-104 380.6 206 91.7
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 7.9e-104 380.6 208 90.9
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 7.9e-104 380.6 208 91.8
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 1.0e-103 380.2 206 91.3
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 1.0e-103 380.2 208 90.4
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.4e-103 379.8 208 90.9
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 1.4e-103 379.8 206 91.7
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.8e-103 379.4 208 91.3
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 3.0e-103 378.6 210 91.0
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 3.9e-103 378.3 207 90.8
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 3.9e-103 378.3 208 91.3
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 5.1e-103 377.9 208 89.9
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 6.7e-103 377.5 208 90.4
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 6.7e-103 377.5 208 90.9
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 8.8e-103 377.1 206 91.3
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 1.1e-102 376.7 208 90.4
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.1e-102 376.7 213 89.2
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 1.5e-102 376.3 207 89.9
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 1.9e-102 375.9 208 89.9
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 2.5e-102 375.6 208 90.4
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 3.3e-102 375.2 208 89.4
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 4.3e-102 374.8 203 91.6
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 4.3e-102 374.8 218 87.6
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 9.7e-102 373.6 206 89.3
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 2.2e-101 372.5 208 89.4
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 2.8e-101 372.1 206 89.8
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 4.8e-101 371.3 206 88.8
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 8.2e-101 370.5 208 87.5
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.1e-100 370.2 208 88.9
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 1.1e-100 370.2 206 89.3
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 1.4e-100 369.8 207 87.9
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 2.4e-100 369.0 208 88.0
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 3.1e-100 368.6 208 88.5
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 4.1e-100 368.2 208 87.0
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 4.1e-100 368.2 206 86.9
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 4.1e-100 368.2 207 89.9
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 5.3e-100 367.9 209 88.5
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 6.9e-100 367.5 209 88.0
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 6.9e-100 367.5 209 88.0
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 6.9e-100 367.5 207 87.4
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 9.1e-100 367.1 205 89.3
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 9.1e-100 367.1 209 88.0
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 2.6e-99 365.5 208 87.0
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 3.4e-99 365.2 208 87.5
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 3.4e-99 365.2 208 87.5
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 3.4e-99 365.2 208 87.5
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 4.5e-99 364.8 205 88.8
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 7.7e-99 364.0 208 89.9
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 1.0e-98 363.6 208 87.0
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 3.8e-98 361.7 208 86.5
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 3.8e-98 361.7 208 86.5
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 3.8e-98 361.7 208 85.6
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.4e-97 359.8 207 88.4
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.4e-97 359.8 207 88.4
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 1.4e-97 359.8 208 88.5
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 1.9e-97 359.4 208 85.1
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 1.9e-97 359.4 208 86.5
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 2.5e-97 359.0 208 86.5
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 4.2e-97 358.2 196 91.8
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 4.2e-97 358.2 207 87.9
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 5.5e-97 357.8 207 87.9
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 9.4e-97 357.1 208 85.6
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 2.7e-96 355.5 208 85.1
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 2.7e-96 355.5 208 83.2
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 2.7e-96 355.5 208 82.7
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.3e-95 352.4 207 86.5
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 1.4e-92 343.2 208 83.7
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 2.4e-92 342.4 178 94.4
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.2e-91 340.1 208 84.6
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 2.6e-91 339.0 178 93.8
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 2.2e-90 335.9 179 92.2
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 1.9e-89 332.8 178 92.7
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 4.2e-89 331.6 206 83.5
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 4.4e-86 321.6 208 75.0
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 7.4e-86 320.9 179 86.6
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 9.7e-86 320.5 210 81.9
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 4.8e-85 318.2 177 87.0
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 8.2e-85 317.4 208 80.8
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 2.4e-84 315.8 190 82.6
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 4.4e-78 295.0 167 85.6
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 6.3e-77 291.2 156 91.0
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 1.4e-76 290.0 205 73.2
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 1.2e-75 287.0 207 73.4
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 1.6e-75 286.6 156 90.4
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 7.5e-70 267.7 232 63.8
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 5.9e-67 258.1 203 62.1
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 1.0e-66 257.3 202 61.4
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 1.0e-66 257.3 206 67.0
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 9.5e-65 250.8 200 59.0
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 2.3e-63 246.1 198 60.1
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 1.2e-62 243.8 162 79.0
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.1e-57 227.3 120 91.7
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 2.5e-57 226.1 196 54.6
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 3.3e-57 225.7 133 88.0
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 2.2e-53 213.0 207 51.7
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 2.4e-52 209.5 207 54.1
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 7.0e-52 208.0 151 72.8
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 3.5e-51 205.7 167 65.9
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 5.6e-49 198.4 209 56.0
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 5.6e-49 198.4 197 48.2
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 4.0e-47 192.2 196 46.9
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 6.6e-42 174.9 231 41.6
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 7.3e-41 171.4 160 62.5
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 1.1e-39 167.5 98 82.7
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 3.1e-39 166.0 208 48.6
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 4.1e-36 155.6 206 48.5
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 1.6e-32 143.7 187 40.1
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 1.2e-30 137.5 96 76.0
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 4.4e-30 135.6 74 89.2
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 4.4e-30 135.6 99 71.7
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 5.4e-28 128.6 83 75.9
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 7.8e-27 124.8 92 69.6
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 3.0e-26 122.9 135 54.8
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 2.8e-24 116.3 60 86.7
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 5.8e-22 108.6 73 76.7
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 1.3e-21 107.5 82 65.9
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 1.7e-21 107.1 60 86.7
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 1.7e-13 80.5 61 63.9
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 2.3e-10 70.1 62 66.1
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 9.6e-09 64.7 39 76.9
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 2.4e-07 60.1 38 71.1
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 1.2e-06 57.8 47 70.2
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 2.6e-06 56.6 137 24.8


User provided reference genes

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