Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1082500 Malus domestica HOM05D003181 ORTHO05D003689 7.8e-48 193.4 91 100.0
MD13G1097200 Malus domestica HOM05D003181 ORTHO05D003689 2.5e-25 118.6 67 85.1
Prupe.1G248400 Prunus persica HOM05D003181 ORTHO05D003689 7.9e-24 113.6 67 82.1
EL10Ac6g13774 Beta vulgaris HOM05D003181 ORTHO05D003689 2.2e-21 105.5 67 76.1
Nn4g26081 Nelumbo nucifera HOM05D003181 ORTHO05D003689 1.4e-20 102.8 67 73.1
Haze_12231 Corylus avellana HOM05D003181 ORTHO05D003689 1.8e-20 102.4 67 74.6
CANSAT01G1458 Cannabis sativa HOM05D003181 ORTHO05D003689 2.4e-20 102.1 67 73.1
Sc14g0008680 Simmondsia chinensis HOM05D003181 ORTHO05D003689 4.1e-20 101.3 68 70.6
CiPaw.06G069100 Carya illinoinensis HOM05D003181 ORTHO05D003689 5.3e-20 100.9 67 74.6
Lj2g0003694 Lotus japonicus HOM05D003181 ORTHO05D003689 6.9e-20 100.5 66 75.8
GSVIVG01006655001 Vitis vinifera HOM05D003181 ORTHO05D003689 6.9e-20 100.5 67 73.1
Glyma.01G027500 Glycine max HOM05D003181 ORTHO05D003689 9.0e-20 100.1 67 71.6
Glyma.02G037500 Glycine max HOM05D003181 ORTHO05D003689 9.0e-20 100.1 67 71.6
Psat0s4431g0040 Pisum sativum HOM05D003181 ORTHO05D003689 9.0e-20 100.1 67 74.6
RcHm_v2.0_Chr4g0433281 Rosa chinensis HOM05D003181 ORTHO05D003689 1.2e-19 99.8 51 90.2
CSS0015245 Camellia sinensis var. sinensis HOM05D003181 ORTHO05D003689 1.5e-19 99.4 67 73.1
FvH4_4g25830 Fragaria vesca HOM05D003181 ORTHO05D003689 1.5e-19 99.4 51 90.2
FAN07G0369 Fragaria x ananassa HOM05D003181 ORTHO05D003689 1.5e-19 99.4 51 90.2
FAN12G0074 Fragaria x ananassa HOM05D003181 ORTHO05D003689 1.5e-19 99.4 51 90.2
FAN12G1433 Fragaria x ananassa HOM05D003181 ORTHO05D003689 1.5e-19 99.4 51 90.2
FAN17G1239 Fragaria x ananassa HOM05D003181 ORTHO05D003689 1.5e-19 99.4 51 90.2
FAN22G1871 Fragaria x ananassa HOM05D003181 ORTHO05D003689 1.5e-19 99.4 51 90.2
Phvul.002G059000 Phaseolus vulgaris HOM05D003181 ORTHO05D003689 1.5e-19 99.4 68 73.5
Hund06016 Selenicereus undatus HOM05D003181 ORTHO05D003689 1.5e-19 99.4 67 73.1
TAR362G1206 Trochodendron aralioides HOM05D003181 ORTHO05D003689 1.5e-19 99.4 67 74.6
CARHR023780 Cardamine hirsuta HOM05D003181 ORTHO05D003689 2.0e-19 99.0 66 72.7
Nitab4.5_0002255g0080 Nicotiana tabacum HOM05D003181 ORTHO05D003689 2.0e-19 99.0 58 79.3
QL03p058631 Quercus lobata HOM05D003181 ORTHO05D003689 2.0e-19 99.0 66 74.2
QL93p0112_0009 Quercus lobata HOM05D003181 ORTHO05D003689 2.0e-19 99.0 66 74.2
Actinidia37414 Actinidia chinensis HOM05D003181 ORTHO05D003689 2.6e-19 98.6 57 80.7
AT1G23330 Arabidopsis thaliana HOM05D003181 ORTHO05D003689 2.6e-19 98.6 66 72.7
Medtr5g033590 Medicago truncatula HOM05D003181 ORTHO05D003689 2.6e-19 98.6 59 78.0
Nn3g21229 Nelumbo nucifera HOM05D003181 ORTHO05D003689 3.4e-19 98.2 66 71.2
Nitab4.5_0000069g0310 Nicotiana tabacum HOM05D003181 ORTHO05D003689 3.4e-19 98.2 52 88.5
Duzib251G0543 Durio zibethinus HOM05D003181 ORTHO05D003689 4.5e-19 97.8 68 79.4
TWI36G0409 Tripterygium wilfordii HOM05D003181 ORTHO05D003689 4.5e-19 97.8 63 76.2
AL1G37120 Arabidopsis lyrata HOM05D003181 ORTHO05D003689 5.9e-19 97.4 66 71.2
PGR119G2256 Punica granatum HOM05D003181 ORTHO05D003689 5.9e-19 97.4 67 68.7
Thecc.02G256700 Theobroma cacao HOM05D003181 ORTHO05D003689 5.9e-19 97.4 68 77.9
Ca_04583_v3 Cicer arietinum L. HOM05D003181 ORTHO05D003689 7.6e-19 97.1 67 71.6
TAR633G0502 Trochodendron aralioides HOM05D003181 ORTHO05D003689 7.6e-19 97.1 67 73.1
Lsat_1_v5_gn_3_28800 Lactuca sativa HOM05D003181 ORTHO05D003689 1.0e-18 96.7 54 83.3
Lj3A1057T75 Lonicera japonica HOM05D003181 ORTHO05D003689 1.0e-18 96.7 50 90.0
Manes.12G024900 Manihot esculenta HOM05D003181 ORTHO05D003689 1.0e-18 96.7 69 72.5
Oeu014149.1 Olea europaea HOM05D003181 ORTHO05D003689 1.0e-18 96.7 52 86.5
COL.COLO4_24240 Corchorus olitorius HOM05D003181 ORTHO05D003689 1.3e-18 96.3 67 76.1
DCAR_031136 Daucus carota HOM05D003181 ORTHO05D003689 1.3e-18 96.3 52 86.5
Lalb_Chr09g0326211 Lupinus albus HOM05D003181 ORTHO05D003689 1.3e-18 96.3 70 71.4
PSO407G0244 Papaver somniferum HOM05D003181 ORTHO05D003689 1.3e-18 96.3 50 92.0
Sp1g20780 Schrenkiella parvula HOM05D003181 ORTHO05D003689 1.3e-18 96.3 66 72.7
VMungo1215G1501 Vigna mungo HOM05D003181 ORTHO05D003689 1.3e-18 96.3 66 71.2
Carub.0001s2292 Capsella rubella HOM05D003181 ORTHO05D003689 1.7e-18 95.9 66 69.7
CARHR010930 Cardamine hirsuta HOM05D003181 ORTHO05D003689 1.7e-18 95.9 67 73.1
Cc11_g15520 Coffea canephora HOM05D003181 ORTHO05D003689 1.7e-18 95.9 55 83.6
Eucgr.B03302 Eucalyptus grandis HOM05D003181 ORTHO05D003689 1.7e-18 95.9 59 79.7
Manes.13G026400 Manihot esculenta HOM05D003181 ORTHO05D003689 1.7e-18 95.9 53 88.7
Sed0017244 Sechium edule HOM05D003181 ORTHO05D003689 1.7e-18 95.9 67 67.2
TPR.G38730 Trifolium pratense HOM05D003181 ORTHO05D003689 1.7e-18 95.9 55 83.6
BraA09t41828Z Brassica rapa HOM05D003181 ORTHO05D003689 2.2e-18 95.5 57 82.5
Thhalv10007563m.g Eutrema salsugineum HOM05D003181 ORTHO05D003689 2.2e-18 95.5 68 73.5
PGR102G0409 Punica granatum HOM05D003181 ORTHO05D003689 2.2e-18 95.5 66 72.7
PGSC0003DMG400007679 Solanum tuberosum HOM05D003181 ORTHO05D003689 2.2e-18 95.5 67 65.7
THA.LOC104809020 Tarenaya hassleriana HOM05D003181 ORTHO05D003689 2.2e-18 95.5 67 73.1
HPP92_011829 Vanilla planifolia HOM05D003181 ORTHO05D003689 2.2e-18 95.5 62 77.4
CiPaw.05G184400 Carya illinoinensis HOM05D003181 ORTHO05D003689 2.9e-18 95.1 49 91.8
Sp1g09580 Schrenkiella parvula HOM05D003181 ORTHO05D003689 2.9e-18 95.1 67 71.6
Actinidia15079 Actinidia chinensis HOM05D003181 ORTHO05D003689 3.8e-18 94.7 48 93.8
arahy.Tifrunner.gnm1.ann1.EU3A7K Arachis hypogaea HOM05D003181 ORTHO05D003689 3.8e-18 94.7 53 84.9
arahy.Tifrunner.gnm1.ann1.SV2VKR Arachis hypogaea HOM05D003181 ORTHO05D003689 3.8e-18 94.7 53 84.9
BcaC07g38586 Brassica carinata HOM05D003181 ORTHO05D003689 3.8e-18 94.7 48 93.8
BcaC07g38625 Brassica carinata HOM05D003181 ORTHO05D003689 3.8e-18 94.7 48 93.8
A08p33800 Brassica napus HOM05D003181 ORTHO05D003689 3.8e-18 94.7 48 93.8
C08p13930 Brassica napus HOM05D003181 ORTHO05D003689 3.8e-18 94.7 48 93.8
BolC8t49027H Brassica oleracea HOM05D003181 ORTHO05D003689 3.8e-18 94.7 48 93.8
BraA08t35296Z Brassica rapa HOM05D003181 ORTHO05D003689 3.8e-18 94.7 48 93.8
AUR62024302 Chenopodium quinoa HOM05D003181 ORTHO05D003689 3.8e-18 94.7 65 73.8
MELO3C010684.2 Cucumis melo HOM05D003181 ORTHO05D003689 3.8e-18 94.7 53 83.0
CsaV3_2G024860 Cucumis sativus L. HOM05D003181 ORTHO05D003689 3.8e-18 94.7 53 83.0
Dinv24809 Davidia involucrata HOM05D003181 ORTHO05D003689 3.8e-18 94.7 48 93.8
HanXRQChr06g0174461 Helianthus annuus HOM05D003181 ORTHO05D003689 3.8e-18 94.7 62 77.4
HanXRQChr17g0539721 Helianthus annuus HOM05D003181 ORTHO05D003689 3.8e-18 94.7 52 84.6
Oeu038622.1 Olea europaea HOM05D003181 ORTHO05D003689 3.8e-18 94.7 65 73.8
PSO170G4950 Papaver somniferum HOM05D003181 ORTHO05D003689 3.8e-18 94.7 48 93.8
Potri.008G187900 Populus trichocarpa HOM05D003181 ORTHO05D003689 3.8e-18 94.7 48 93.8
Rhsim12G0112400 Rhododendron simsii HOM05D003181 ORTHO05D003689 3.8e-18 94.7 48 93.8
Hund25381 Selenicereus undatus HOM05D003181 ORTHO05D003689 3.8e-18 94.7 67 67.2
THA.LOC104809584 Tarenaya hassleriana HOM05D003181 ORTHO05D003689 3.8e-18 94.7 48 93.8
ClCG08G017770 Citrullus lanatus HOM05D003181 ORTHO05D003689 5.0e-18 94.4 65 70.8
DCAR_024446 Daucus carota HOM05D003181 ORTHO05D003689 5.0e-18 94.4 62 75.8
Thhalv10007569m.g Eutrema salsugineum HOM05D003181 ORTHO05D003689 5.0e-18 94.4 66 69.7
Gohir.A05G312900 Gossypium hirsutum HOM05D003181 ORTHO05D003689 5.0e-18 94.4 69 71.0
Gohir.D05G314300 Gossypium hirsutum HOM05D003181 ORTHO05D003689 5.0e-18 94.4 69 71.0
Gorai.009G335900 Gossypium raimondii HOM05D003181 ORTHO05D003689 5.0e-18 94.4 69 71.0
Oeu049182.1 Olea europaea HOM05D003181 ORTHO05D003689 5.0e-18 94.4 48 91.7
TWI75G1541 Tripterygium wilfordii HOM05D003181 ORTHO05D003689 5.0e-18 94.4 48 91.7
vmacro16210 Vaccinium macrocarpon HOM05D003181 ORTHO05D003689 5.0e-18 94.4 59 74.6
Atru.chr11.2093 Acer truncatum HOM05D003181 ORTHO05D003689 6.5e-18 94.0 51 86.3
BcaB07g32329 Brassica carinata HOM05D003181 ORTHO05D003689 6.5e-18 94.0 66 71.2
Ciclev10031442m.g Citrus clementina HOM05D003181 ORTHO05D003689 6.5e-18 94.0 49 89.8
ECA246G2282 Erigeron canadensis HOM05D003181 ORTHO05D003689 6.5e-18 94.0 52 84.6
Gohir.A01G159200 Gossypium hirsutum HOM05D003181 ORTHO05D003689 6.5e-18 94.0 68 75.0
HPP92_010631 Vanilla planifolia HOM05D003181 ORTHO05D003689 6.5e-18 94.0 51 84.3
Aa31LG1G4100 Aethionema arabicum HOM05D003181 ORTHO05D003689 8.5e-18 93.6 48 93.8
AL1G21660 Arabidopsis lyrata HOM05D003181 ORTHO05D003689 8.5e-18 93.6 48 93.8
AT1G10740 Arabidopsis thaliana HOM05D003181 ORTHO05D003689 8.5e-18 93.6 48 93.8
MSTRG.7917 Avicennia marina HOM05D003181 ORTHO05D003689 8.5e-18 93.6 48 91.7
BcaB08g37371 Brassica carinata HOM05D003181 ORTHO05D003689 8.5e-18 93.6 48 93.8
A09p64620 Brassica napus HOM05D003181 ORTHO05D003689 8.5e-18 93.6 48 93.8
C08p48580 Brassica napus HOM05D003181 ORTHO05D003689 8.5e-18 93.6 48 93.8
BolC8t52397H Brassica oleracea HOM05D003181 ORTHO05D003689 8.5e-18 93.6 48 93.8
Carub.0001s1026 Capsella rubella HOM05D003181 ORTHO05D003689 8.5e-18 93.6 48 93.8
CAN.G447.6 Capsicum annuum HOM05D003181 ORTHO05D003689 8.5e-18 93.6 48 91.7
Cpa.g.sc69.93 Carica papaya HOM05D003181 ORTHO05D003689 8.5e-18 93.6 48 91.7
AUR62005439 Chenopodium quinoa HOM05D003181 ORTHO05D003689 8.5e-18 93.6 54 81.5
CsaV3_5G031280 Cucumis sativus L. HOM05D003181 ORTHO05D003689 8.5e-18 93.6 48 91.7
DCAR_007063 Daucus carota HOM05D003181 ORTHO05D003689 8.5e-18 93.6 48 91.7
Duzib268G0609 Durio zibethinus HOM05D003181 ORTHO05D003689 8.5e-18 93.6 70 72.9
Eucgr.H02520 Eucalyptus grandis HOM05D003181 ORTHO05D003689 8.5e-18 93.6 48 91.7
Lj6A810T62 Lonicera japonica HOM05D003181 ORTHO05D003689 8.5e-18 93.6 52 86.5
Nitab4.5_0002552g0010 Nicotiana tabacum HOM05D003181 ORTHO05D003689 8.5e-18 93.6 48 91.7
Zm00001eb305700 Zea mays HOM05D003181 ORTHO05D003689 8.5e-18 93.6 51 82.4
CDE09G1142 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 1.1e-17 93.2 48 91.7
MELO3C011968.2 Cucumis melo HOM05D003181 ORTHO05D003689 1.1e-17 93.2 60 76.7
MBI18_g15802_MAGBIO Magnolia biondii HOM05D003181 ORTHO05D003689 1.1e-17 93.2 78 65.4
Sabra10G0023700 Salix brachista HOM05D003181 ORTHO05D003689 1.1e-17 93.2 48 91.7
Sopen05g001010 Solanum pennellii HOM05D003181 ORTHO05D003689 1.1e-17 93.2 48 89.6
Aqoxy5G00597 Aquilegia oxysepala HOM05D003181 ORTHO05D003689 1.4e-17 92.8 48 91.7
MSTRG.2414 Avicennia marina HOM05D003181 ORTHO05D003689 1.4e-17 92.8 48 87.5
ClCG05G025620 Citrullus lanatus HOM05D003181 ORTHO05D003689 1.4e-17 92.8 48 91.7
Lalb_Chr16g0382081 Lupinus albus HOM05D003181 ORTHO05D003689 1.4e-17 92.8 68 66.2
Sabra08G0142300 Salix brachista HOM05D003181 ORTHO05D003689 1.4e-17 92.8 48 91.7
TWI18G1209 Tripterygium wilfordii HOM05D003181 ORTHO05D003689 1.4e-17 92.8 48 89.6
Aa31LG7G7350 Aethionema arabicum HOM05D003181 ORTHO05D003689 1.9e-17 92.4 48 89.6
BcaC05g26245 Brassica carinata HOM05D003181 ORTHO05D003689 1.9e-17 92.4 48 89.6
A09p41310 Brassica napus HOM05D003181 ORTHO05D003689 1.9e-17 92.4 48 89.6
C05p22600 Brassica napus HOM05D003181 ORTHO05D003689 1.9e-17 92.4 48 89.6
BolC5t30959H Brassica oleracea HOM05D003181 ORTHO05D003689 1.9e-17 92.4 48 89.6
BraA09t39624Z Brassica rapa HOM05D003181 ORTHO05D003689 1.9e-17 92.4 48 89.6
Gohir.D01G151100 Gossypium hirsutum HOM05D003181 ORTHO05D003689 1.9e-17 92.4 68 73.5
Gorai.002G187400 Gossypium raimondii HOM05D003181 ORTHO05D003689 1.9e-17 92.4 68 73.5
MBI19_g13777_MAGBIO Magnolia biondii HOM05D003181 ORTHO05D003689 1.9e-17 92.4 48 89.6
Peaxi162Scf00128g00020 Petunia axillaris HOM05D003181 ORTHO05D003689 1.9e-17 92.4 48 91.7
Sopen01g003500 Solanum pennellii HOM05D003181 ORTHO05D003689 1.9e-17 92.4 59 72.9
PGSC0003DMG401016370 Solanum tuberosum HOM05D003181 ORTHO05D003689 1.9e-17 92.4 52 80.8
BcaB03g11933 Brassica carinata HOM05D003181 ORTHO05D003689 2.5e-17 92.0 62 75.8
CDE02G2508 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 2.5e-17 92.0 57 75.4
Potri.010G044400 Populus trichocarpa HOM05D003181 ORTHO05D003689 2.5e-17 92.0 48 89.6
Aqoxy2G03157 Aquilegia oxysepala HOM05D003181 ORTHO05D003689 3.2e-17 91.7 48 87.5
unitig_22.g6456 Utricularia gibba HOM05D003181 ORTHO05D003689 3.2e-17 91.7 48 89.6
unitig_25.g30573 Utricularia gibba HOM05D003181 ORTHO05D003689 3.2e-17 91.7 48 89.6
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 4.2e-17 91.3 48 89.6
Zm00001eb287830 Zea mays HOM05D003181 ORTHO05D003689 4.2e-17 91.3 51 84.3
BcaC07g41797 Brassica carinata HOM05D003181 ORTHO05D003689 5.5e-17 90.9 48 91.7
Sc11g0001030 Simmondsia chinensis HOM05D003181 ORTHO05D003689 5.5e-17 90.9 67 65.7
Peaxi162Scf00021g01817 Petunia axillaris HOM05D003181 ORTHO05D003689 7.2e-17 90.5 46 93.5
Solyc01g007950.4 Solanum lycopersicum HOM05D003181 ORTHO05D003689 7.2e-17 90.5 52 80.8
ATR0487G011 Amborella trichopoda HOM05D003181 ORTHO05D003689 9.3e-17 90.1 52 80.8
BcaC07g39194 Brassica carinata HOM05D003181 ORTHO05D003689 1.6e-16 89.4 48 87.5
C08p21840 Brassica napus HOM05D003181 ORTHO05D003689 1.6e-16 89.4 48 87.5
BolC8t49823H Brassica oleracea HOM05D003181 ORTHO05D003689 1.6e-16 89.4 48 87.5
BraA08t34754Z Brassica rapa HOM05D003181 ORTHO05D003689 1.6e-16 89.4 48 87.5
Duzib248G0372 Durio zibethinus HOM05D003181 ORTHO05D003689 2.1e-16 89.0 62 77.4
Sed0027555 Sechium edule HOM05D003181 ORTHO05D003689 2.7e-16 88.6 48 85.4
Os05g0408300 Oryza sativa ssp. japonica HOM05D003181 ORTHO05D003689 3.9e-15 84.7 45 88.9
unitig_8.g3160 Utricularia gibba HOM05D003181 ORTHO05D003689 3.9e-15 84.7 57 75.4
CDE11G0860 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 6.7e-15 84.0 52 71.2
CDE11G1191 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 6.7e-15 84.0 52 71.2
SMO358G0744 Selaginella moellendorffii HOM05D003181 ORTHO05D003689 1.1e-14 83.2 46 82.6
CDE05G0181 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 1.9e-14 82.4 52 69.2
SMO147G0116 Selaginella moellendorffii HOM05D003181 ORTHO05D003689 4.3e-14 81.3 59 62.7
Mapoly0048s0073 Marchantia polymorpha HOM05D003181 ORTHO05D003689 1.3e-13 79.7 46 78.3
Lalb_Chr16g0382071 Lupinus albus HOM05D003181 ORTHO05D003689 2.8e-13 78.6 64 65.6
Lj9A677T35 Lonicera japonica HOM05D003181 ORTHO05D003689 4.8e-13 77.8 66 54.5
Rhsim07G0177900 Rhododendron simsii HOM05D003181 ORTHO05D007039 8.2e-13 77.0 47 72.3
A08p28230 Brassica napus HOM05D003181 ORTHO05D003689 2.4e-12 75.5 73 57.5
CAN.G92.9 Capsicum annuum HOM05D003181 ORTHO05D002757 1.5e-11 72.8 58 60.3
SHI17756 Sapria himalayana HOM05D003181 ORTHO05D003689 3.4e-11 71.6 67 59.7
Pp3c1_33410 Physcomitrium patens HOM05D003181 ORTHO05D003689 4.5e-11 71.2 46 67.4
ECA248G0407 Erigeron canadensis HOM05D003181 ORTHO05D003689 5.9e-11 70.9 68 51.5
ECA248G3726 Erigeron canadensis HOM05D002264 ORTHO05D002413 1.7e-10 69.3 65 50.8
Ah.03g133190 Amaranthus hybridus HOM05D003181 ORTHO05D003689 3.8e-10 68.2 67 58.2
Nitab4.5_0005364g0040 Nicotiana tabacum HOM05D003181 ORTHO05D003689 2.7e-08 62.0 34 85.3
SGA_v2.0_scaffold63G21722 Striga asiatica HOM05D003181 ORTHO05D003689 6.1e-08 60.8 33 84.8
CBR_g20178 Chara braunii HOM05D003181 ORTHO05D003689 7.9e-08 60.5 61 50.8
Lj9C680G5 Lonicera japonica HOM05D003181 ORTHO05D003689 4.4e-06 54.7 37 64.9


User provided reference genes

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