Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1079500 Malus domestica HOM05D006025 ORTHO05D008547 3.9e-174 614.8 324 100.0
MD13G1079600 Malus domestica HOM05D006025 ORTHO05D008547 5.5e-144 514.6 323 85.8
Prupe.1G267200 Prunus persica HOM05D006025 ORTHO05D008547 8.2e-140 500.7 323 82.4
RcHm_v2.0_Chr4g0440761 Rosa chinensis HOM05D006025 ORTHO05D008547 1.5e-122 443.4 326 75.8
FAN22G0508 Fragaria x ananassa HOM05D006025 ORTHO05D008547 4.7e-119 431.8 324 75.3
FAN07G0827 Fragaria x ananassa HOM05D006025 ORTHO05D008547 1.5e-117 426.8 326 74.2
FvH4_4g32070 Fragaria vesca HOM05D006025 ORTHO05D008547 7.4e-117 424.5 324 74.1
FAN12G1990 Fragaria x ananassa HOM05D006025 ORTHO05D008547 1.1e-115 420.6 323 73.4
COL.COLO4_36182 Corchorus olitorius HOM05D006025 ORTHO05D008547 1.5e-112 410.2 330 69.7
CANSAT78G1034 Cannabis sativa HOM05D006025 ORTHO05D008547 2.1e-111 406.4 323 68.4
Dinv34195 Davidia involucrata HOM05D006025 ORTHO05D008547 8.0e-111 404.4 254 83.9
QL03p065944 Quercus lobata HOM05D006025 ORTHO05D008547 2.6e-109 399.4 323 69.7
Thecc.02G232800 Theobroma cacao HOM05D006025 ORTHO05D008547 2.6e-109 399.4 327 69.4
Cfa009042 Carpinus fangiana HOM05D006025 ORTHO05D008547 5.7e-109 398.3 324 69.1
ClCG05G024630 Citrullus lanatus HOM05D006025 ORTHO05D008547 5.7e-109 398.3 315 69.5
Manes.05G096000 Manihot esculenta HOM05D006025 ORTHO05D008547 9.7e-109 397.5 325 68.0
CiPaw.05G140400 Carya illinoinensis HOM05D006025 ORTHO05D008547 2.8e-108 396.0 323 68.1
CsaV3_5G032300 Cucumis sativus L. HOM05D006025 ORTHO05D008547 4.8e-108 395.2 315 70.8
MELO3C012062.2 Cucumis melo HOM05D006025 ORTHO05D008547 1.4e-107 393.7 315 70.5
Sed0022227 Sechium edule HOM05D006025 ORTHO05D008547 1.2e-106 390.6 324 68.5
Atru.chr11.1861 Acer truncatum HOM05D006025 ORTHO05D008547 1.0e-105 387.5 326 67.2
Ciclev10032129m.g Citrus clementina HOM05D006025 ORTHO05D008547 8.5e-105 384.4 326 66.6
Sabra10G0030400 Salix brachista HOM05D006025 ORTHO05D008547 2.5e-104 382.9 287 70.4
Actinidia31175 Actinidia chinensis HOM05D006025 ORTHO05D008547 9.4e-104 380.9 333 66.4
Potri.010G034400 Populus trichocarpa HOM05D006025 ORTHO05D008547 8.0e-103 377.9 277 71.8
Gorai.009G347000 Gossypium raimondii HOM05D006025 ORTHO05D008547 1.4e-102 377.1 260 75.0
Rhsim12G0129700 Rhododendron simsii HOM05D006025 ORTHO05D008547 1.2e-101 374.0 320 66.9
TWI18G0579 Tripterygium wilfordii HOM05D006025 ORTHO05D008547 1.2e-101 374.0 323 63.2
Migut.E00118 Erythranthe guttata HOM05D006025 ORTHO05D008547 2.0e-101 373.2 282 70.6
Phvul.002G080900 Phaseolus vulgaris HOM05D006025 ORTHO05D008547 2.0e-101 373.2 318 64.2
PGR119G0173 Punica granatum HOM05D006025 ORTHO05D008547 4.4e-101 372.1 331 66.8
Gohir.D05G323300 Gossypium hirsutum HOM05D006025 ORTHO05D008547 5.7e-101 371.7 320 64.1
Gohir.A05G321100 Gossypium hirsutum HOM05D006025 ORTHO05D008547 7.5e-101 371.3 323 63.5
Lj2g0002167 Lotus japonicus HOM05D006025 ORTHO05D008547 7.5e-101 371.3 323 64.7
GSVIVG01020079001 Vitis vinifera HOM05D006025 ORTHO05D008547 1.3e-100 370.5 327 64.8
SalBow8G3437 Salvia bowleyana HOM05D006025 ORTHO05D008547 2.8e-100 369.4 274 72.6
Lj6A795T74 Lonicera japonica HOM05D006025 ORTHO05D008547 4.8e-100 368.6 322 64.0
vmacro16324 Vaccinium macrocarpon HOM05D006025 ORTHO05D008547 4.8e-100 368.6 365 59.7
Glyma.01G040500 Glycine max HOM05D006025 ORTHO05D008547 1.4e-99 367.1 324 63.3
VMungo1215G1908 Vigna mungo HOM05D006025 ORTHO05D008547 1.8e-99 366.7 311 64.3
Medtr5g037600 Medicago truncatula HOM05D006025 ORTHO05D008547 2.4e-99 366.3 264 72.7
CAN.G27.7 Capsicum annuum HOM05D006025 ORTHO05D008547 5.4e-99 365.2 330 64.2
Nitab4.5_0000679g0100 Nicotiana tabacum HOM05D006025 ORTHO05D008547 7.0e-99 364.8 340 64.4
Cc11_g13550 Coffea canephora HOM05D006025 ORTHO05D008547 1.2e-98 364.0 332 65.4
Duzib268G1145 Durio zibethinus HOM05D006025 ORTHO05D008547 4.5e-98 362.1 306 65.0
Cpa.g.sc73.14 Carica papaya HOM05D006025 ORTHO05D008547 1.0e-97 360.9 328 62.8
Thhalv10004613m.g Eutrema salsugineum HOM05D006025 ORTHO05D008547 2.5e-96 356.3 327 63.9
TAR481G0011 Trochodendron aralioides HOM05D006025 ORTHO05D008547 5.5e-96 355.1 266 70.3
Hund25274 Selenicereus undatus HOM05D006025 ORTHO05D008547 9.5e-96 354.4 320 62.2
Sc11g0001660 Simmondsia chinensis HOM05D006025 ORTHO05D008547 1.2e-95 354.0 267 71.5
Sopen05g002930 Solanum pennellii HOM05D006025 ORTHO05D008547 1.2e-95 354.0 323 63.8
TPR.G26717 Trifolium pratense HOM05D006025 ORTHO05D008547 1.2e-95 354.0 321 61.7
AL5G11850 Arabidopsis lyrata HOM05D006025 ORTHO05D008547 1.6e-95 353.6 331 62.5
Haze_12072 Corylus avellana HOM05D006025 ORTHO05D008547 6.1e-95 351.7 301 68.8
Sp2g13810 Schrenkiella parvula HOM05D006025 ORTHO05D008547 8.0e-95 351.3 331 61.3
THA.LOC104805137 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 8.0e-95 351.3 328 63.1
Migut.L01348 Erythranthe guttata HOM05D006025 ORTHO05D008547 1.4e-94 350.5 319 61.8
Ca_04692_v3 Cicer arietinum L. HOM05D006025 ORTHO05D008547 1.8e-94 350.1 259 72.2
Lalb_Chr05g0217521 Lupinus albus HOM05D006025 ORTHO05D008547 1.8e-94 350.1 283 66.1
AT2G02590 Arabidopsis thaliana HOM05D006025 ORTHO05D008547 2.3e-94 349.7 327 62.4
EL10Ac6g13142 Beta vulgaris HOM05D006025 ORTHO05D008547 3.0e-94 349.4 338 60.1
Carub.0005s0158 Capsella rubella HOM05D006025 ORTHO05D008547 4.0e-94 349.0 267 70.4
arahy.Tifrunner.gnm1.ann1.V5YJYF Arachis hypogaea HOM05D006025 ORTHO05D008547 7.5e-93 344.7 331 61.0
arahy.Tifrunner.gnm1.ann1.1ZL8TB Arachis hypogaea HOM05D006025 ORTHO05D008547 9.8e-93 344.4 331 61.0
BcaC06g31223 Brassica carinata HOM05D006025 ORTHO05D008547 9.8e-93 344.4 326 61.7
BcaC06g34048 Brassica carinata HOM05D006025 ORTHO05D008547 1.7e-92 343.6 245 74.3
Aa31LG2G7560 Aethionema arabicum HOM05D006025 ORTHO05D008547 3.7e-92 342.4 329 62.0
Lsat_1_v5_gn_3_49700 Lactuca sativa HOM05D006025 ORTHO05D008547 4.9e-92 342.0 270 70.4
C07p33300 Brassica napus HOM05D006025 ORTHO05D008547 6.3e-92 341.7 327 62.1
BolC7t43841H Brassica oleracea HOM05D006025 ORTHO05D008547 6.3e-92 341.7 245 73.9
BraA09t37996Z Brassica rapa HOM05D006025 ORTHO05D008547 6.3e-92 341.7 328 60.4
Nn4g23031 Nelumbo nucifera HOM05D006025 ORTHO05D008547 6.3e-92 341.7 336 59.8
MSTRG.7831 Avicennia marina HOM05D006025 ORTHO05D008547 1.4e-91 340.5 307 63.2
A09p23920 Brassica napus HOM05D006025 ORTHO05D008547 2.4e-91 339.7 328 60.1
Aqoxy3G00786 Aquilegia oxysepala HOM05D006025 ORTHO05D008547 7.0e-91 338.2 246 74.4
HanXRQChr15g0478181 Helianthus annuus HOM05D006025 ORTHO05D008547 9.2e-91 337.8 330 60.0
DCAR_024490 Daucus carota HOM05D006025 ORTHO05D008547 1.2e-90 337.4 209 83.3
Psat2g115440 Pisum sativum HOM05D006025 ORTHO05D008547 1.2e-90 337.4 242 72.7
CARHR145110 Cardamine hirsuta HOM05D006025 ORTHO05D008547 1.6e-90 337.0 325 60.6
C09p30780 Brassica napus HOM05D006025 ORTHO05D008547 4.5e-90 335.5 299 64.2
BcaC04g21520 Brassica carinata HOM05D006025 ORTHO05D008547 7.8e-90 334.7 250 71.2
A06p43550 Brassica napus HOM05D006025 ORTHO05D008547 7.8e-90 334.7 269 67.3
PGSC0003DMG400017619 Solanum tuberosum HOM05D006025 ORTHO05D008547 7.8e-90 334.7 326 60.7
PSO478G1322 Papaver somniferum HOM05D006025 ORTHO05D008547 1.0e-89 334.3 302 62.3
BraA06t27240Z Brassica rapa HOM05D006025 ORTHO05D008547 1.3e-89 334.0 269 67.3
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 1.7e-89 333.6 237 73.4
BolC9t55941H Brassica oleracea HOM05D006025 ORTHO05D008547 3.9e-89 332.4 292 64.7
Oeu044566.1 Olea europaea HOM05D006025 ORTHO05D008547 4.3e-88 328.9 208 82.2
Nitab4.5_0002969g0040 Nicotiana tabacum HOM05D006025 ORTHO05D008547 2.8e-87 326.2 257 69.3
MBI04_g22196_MAGBIO Magnolia biondii HOM05D006025 ORTHO05D008547 8.0e-87 324.7 198 82.3
HanXRQChr17g0544581 Helianthus annuus HOM05D006025 ORTHO05D008547 1.4e-86 323.9 290 63.8
AUR62026262 Chenopodium quinoa HOM05D006025 ORTHO05D008547 1.8e-86 323.6 206 78.2
CSS0050443 Camellia sinensis var. sinensis HOM05D006025 ORTHO05D008547 2.0e-85 320.1 195 83.6
ATR0665G167 Amborella trichopoda HOM05D006025 ORTHO05D008547 6.4e-84 315.1 325 58.5
Eucgr.B02589 Eucalyptus grandis HOM05D006025 ORTHO05D008547 5.4e-83 312.0 211 75.8
BcaB07g30697 Brassica carinata HOM05D006025 ORTHO05D008547 9.2e-83 311.2 303 61.4
Peaxi162Scf00209g00517 Petunia axillaris HOM05D006025 ORTHO05D008547 9.2e-83 311.2 334 59.3
AUR62026454 Chenopodium quinoa HOM05D006025 ORTHO05D008547 1.0e-81 307.8 206 77.7
SalBow2G1916 Salvia bowleyana HOM05D006025 ORTHO05D008547 1.7e-81 307.0 257 64.2
ECA246G2177 Erigeron canadensis HOM05D006025 ORTHO05D008547 2.5e-80 303.1 202 78.2
SGA_v2.0_scaffold87G26972 Striga asiatica HOM05D006025 ORTHO05D008547 1.6e-79 300.4 327 55.7
Os03g0800500 Oryza sativa ssp. japonica HOM05D006025 ORTHO05D008547 1.5e-77 293.9 203 73.9
unitig_62.g23684 Utricularia gibba HOM05D006025 ORTHO05D008547 3.4e-77 292.7 282 58.9
SEGI_16485 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 4.3e-72 275.8 230 61.3
Zm00001eb212770 Zea mays HOM05D006025 ORTHO05D008547 1.0e-65 254.6 197 67.0
Mapoly0001s0092 Marchantia polymorpha HOM05D006025 ORTHO05D008547 4.0e-62 242.7 224 56.7
AagrBONN_evm.TU.Sc2ySwM_117.678 Anthoceros agrestis HOM05D006025 ORTHO05D008547 5.2e-62 242.3 201 60.2
SMO147G0037 Selaginella moellendorffii HOM05D006025 ORTHO05D008547 2.9e-60 236.5 203 58.1
CBR_g39595 Chara braunii HOM05D006025 ORTHO05D008547 9.3e-59 231.5 198 57.1
HPP92_018837 Vanilla planifolia HOM05D006025 ORTHO05D008547 5.3e-54 215.7 151 73.5
CDE07G0470 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 1.2e-53 214.5 280 47.9
Pp3c22_2360 Physcomitrium patens HOM05D006025 ORTHO05D008547 1.5e-53 214.2 202 54.0
Glyma.02G024100 Glycine max HOM05D006025 ORTHO05D008547 1.0e-41 174.9 208 53.4
SEGI_34054 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 2.7e-34 150.2 110 68.2
CDE06G2488 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 8.7e-33 145.2 192 46.4
Solyc05g006965.1 Solanum lycopersicum HOM05D006025 ORTHO05D008547 5.3e-30 136.0 177 49.7
Hma1.2p1_0808F.1_g221580 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 4.1e-22 109.8 78 75.6
Hma1.2p1_0513F.1_g169540 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 5.9e-21 105.9 78 74.4
DCAR_001229 Daucus carota HOM05D006025 ORTHO05D008547 3.8e-12 76.6 50 78.0
Zm00001eb151370 Zea mays HOM05D006025 ORTHO05D443914 6.7e-09 65.9 67 56.7
Dinv16285 Davidia involucrata HOM05D000027 ORTHO05D000500 2.6e-08 63.9 38 86.8


User provided reference genes

Program Settings