Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1054700 Malus domestica HOM05D007623 ORTHO05D009641 3.9e-170 602.8 302 100.0
Prupe.2G062100 Prunus persica HOM05D007623 ORTHO05D009641 1.5e-124 451.4 302 74.5
RcHm_v2.0_Chr4g0437181 Rosa chinensis HOM05D007623 ORTHO05D009641 1.2e-110 405.2 304 69.7
FvH4_4g29120 Fragaria vesca HOM05D007623 ORTHO05D009641 2.5e-108 397.5 303 67.7
FAN12G1349 Fragaria x ananassa HOM05D007623 ORTHO05D009641 4.3e-108 396.7 303 67.3
FAN22G0497 Fragaria x ananassa HOM05D007623 ORTHO05D009641 1.4e-106 391.7 303 66.0
FAN17G1802 Fragaria x ananassa HOM05D007623 ORTHO05D009641 2.0e-105 387.9 303 65.3
CiPaw.06G095500 Carya illinoinensis HOM05D007623 ORTHO05D009641 9.9e-105 385.6 302 63.9
Cfa008839 Carpinus fangiana HOM05D007623 ORTHO05D009641 8.7e-101 372.5 302 63.6
Haze_11851 Corylus avellana HOM05D007623 ORTHO05D009641 3.3e-100 370.5 302 62.9
Dinv34009 Davidia involucrata HOM05D007623 ORTHO05D009641 9.9e-97 359.0 303 60.1
CANSAT64G0130 Cannabis sativa HOM05D007623 ORTHO05D009641 3.8e-96 357.1 303 61.7
Manes.14G091100 Manihot esculenta HOM05D007623 ORTHO05D009641 4.9e-96 356.7 301 62.8
GSVIVG01010112001 Vitis vinifera HOM05D007623 ORTHO05D009641 3.5e-94 350.5 301 62.5
Thecc.02G321100 Theobroma cacao HOM05D007623 ORTHO05D009641 2.3e-93 347.8 297 61.3
Sed0026487 Sechium edule HOM05D007623 ORTHO05D009641 5.1e-93 346.7 302 55.0
Gohir.A03G106900 Gossypium hirsutum HOM05D007623 ORTHO05D009641 7.3e-92 342.8 297 60.6
Gorai.005G147900 Gossypium raimondii HOM05D007623 ORTHO05D009641 9.6e-92 342.4 297 60.6
MELO3C026661.2 Cucumis melo HOM05D007623 ORTHO05D009641 3.6e-91 340.5 303 55.8
Prupe.7G020300 Prunus persica HOM05D007623 ORTHO05D009641 5.3e-90 336.7 214 77.1
ClCG05G023480 Citrullus lanatus HOM05D007623 ORTHO05D009641 9.0e-90 335.9 290 57.2
CsaV3_3G030580 Cucumis sativus L. HOM05D007623 ORTHO05D009641 1.6e-86 325.1 303 54.1
Lj6A773T130 Lonicera japonica HOM05D007623 ORTHO05D009641 1.9e-84 318.2 306 55.9
COL.COLO4_27779 Corchorus olitorius HOM05D007623 ORTHO05D009641 1.1e-82 312.4 269 62.1
Actinidia24041 Actinidia chinensis HOM05D007623 ORTHO05D009641 1.8e-82 311.6 302 54.6
Atru.chr11.1545 Acer truncatum HOM05D007623 ORTHO05D009641 5.3e-82 310.1 304 55.3
Sabra10G0105800 Salix brachista HOM05D007623 ORTHO05D009641 5.8e-81 306.6 302 55.0
Actinidia31923 Actinidia chinensis HOM05D007623 ORTHO05D009641 9.9e-81 305.8 302 52.3
vmacro01293 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 2.1e-78 298.1 303 53.8
CSS0048304 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 6.0e-78 296.6 302 53.0
CSS0034887 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 3.0e-77 294.3 302 53.3
Hund25149 Selenicereus undatus HOM05D007623 ORTHO05D009641 6.2e-75 286.6 310 48.1
MD13G1055600 Malus domestica HOM05D007623 ORTHO05D009641 3.4e-73 280.8 153 91.5
SHI04831 Sapria himalayana HOM05D007623 ORTHO05D009641 3.4e-73 280.8 288 51.4
Nn1g03057 Nelumbo nucifera HOM05D007623 ORTHO05D009641 1.6e-70 271.9 319 47.0
Aqoxy1G01216 Aquilegia oxysepala HOM05D007623 ORTHO05D009641 2.1e-70 271.6 302 46.4
Lsat_1_v5_gn_6_31920 Lactuca sativa HOM05D007623 ORTHO05D009641 8.7e-69 266.2 289 48.8
AL1G25410 Arabidopsis lyrata HOM05D007623 ORTHO05D009641 2.5e-68 264.6 298 47.7
HanXRQChr08g0215011 Helianthus annuus HOM05D007623 ORTHO05D009641 1.5e-65 255.4 304 48.0
Sopen00g002400 Solanum pennellii HOM05D007623 ORTHO05D009641 5.0e-64 250.4 293 48.8
AUR62007860 Chenopodium quinoa HOM05D007623 ORTHO05D009641 1.4e-63 248.8 253 51.4
Aa31LG7G1940 Aethionema arabicum HOM05D007623 ORTHO05D009641 7.2e-63 246.5 272 47.1
THA.LOC104805220 Tarenaya hassleriana HOM05D007623 ORTHO05D009641 9.4e-63 246.1 273 48.0
Rhsim12G0070700 Rhododendron simsii HOM05D007623 ORTHO05D009641 1.6e-62 245.4 275 50.5
DCAR_023738 Daucus carota HOM05D007623 ORTHO05D009641 2.1e-62 245.0 250 50.8
AUR62003048 Chenopodium quinoa HOM05D007623 ORTHO05D009641 1.0e-61 242.7 284 46.5
PGSC0003DMG400019642 Solanum tuberosum HOM05D007623 ORTHO05D009641 1.4e-61 242.3 293 48.5
EL10Ac6g14659 Beta vulgaris HOM05D007623 ORTHO05D009641 5.1e-61 240.4 273 47.3
Carub.0001s1335 Capsella rubella HOM05D007623 ORTHO05D009641 2.5e-60 238.0 281 47.3
BcaC05g25269 Brassica carinata HOM05D007623 ORTHO05D009641 4.8e-59 233.8 279 46.2
BcaB02g06459 Brassica carinata HOM05D007623 ORTHO05D009641 8.2e-59 233.0 278 47.1
Thhalv10009738m.g Eutrema salsugineum HOM05D007623 ORTHO05D009641 8.2e-59 233.0 299 43.1
Sp1g12290 Schrenkiella parvula HOM05D007623 ORTHO05D009641 1.1e-58 232.6 281 44.5
ECA233G1899 Erigeron canadensis HOM05D000630 ORTHO05D001413 3.1e-58 231.1 245 51.8
Oeu019601.2 Olea europaea HOM05D007623 ORTHO05D009641 6.5e-56 223.4 201 54.2
Cc11_g11460 Coffea canephora HOM05D007623 ORTHO05D009641 1.9e-55 221.9 269 50.2
BraA06t24162Z Brassica rapa HOM05D007623 ORTHO05D009641 3.2e-55 221.1 284 44.7
A06p09730 Brassica napus HOM05D007623 ORTHO05D009641 5.5e-55 220.3 284 44.4
C05p11430 Brassica napus HOM05D007623 ORTHO05D009641 7.9e-54 216.5 279 43.4
Sc11g0002680 Simmondsia chinensis HOM05D007623 ORTHO05D009641 9.7e-52 209.5 285 43.5
Ah.03g137460 Amaranthus hybridus HOM05D007623 ORTHO05D009641 4.8e-51 207.2 267 44.2
BolC5t29896H Brassica oleracea HOM05D007623 ORTHO05D009641 2.2e-48 198.4 279 41.6
Migut.E00256 Erythranthe guttata HOM05D007623 ORTHO05D009641 1.6e-46 192.2 279 44.1
SGA_v2.0_scaffold287G47196 Striga asiatica HOM05D007623 ORTHO05D009641 1.3e-43 182.6 254 40.6
Gohir.D02G132000 Gossypium hirsutum HOM05D007623 ORTHO05D009641 7.7e-41 173.3 124 71.0
Zm00001eb045730 Zea mays HOM05D007623 ORTHO05D009641 9.7e-36 156.4 154 48.1
Ciclev10031004m.g Citrus clementina HOM05D007623 ORTHO05D009641 1.7e-35 155.6 114 65.8
ATR0048G027 Amborella trichopoda HOM05D007623 ORTHO05D009641 2.4e-34 151.8 152 46.1
Peaxi162Scf00188g01015 Petunia axillaris HOM05D007623 ORTHO05D009641 7.7e-33 146.7 115 63.5
TAR374G0443 Trochodendron aralioides HOM05D007623 ORTHO05D009641 1.3e-32 146.0 115 58.3
Lsat_1_v5_gn_3_22320 Lactuca sativa HOM05D007623 ORTHO05D009641 1.5e-31 142.5 209 44.0
HPP92_001379 Vanilla planifolia HOM05D007623 ORTHO05D009641 3.2e-31 141.4 182 42.3
Cpa.g.c32845 Carica papaya HOM05D007623 ORTHO05D009641 5.5e-31 140.6 149 53.0
AT1G13630 Arabidopsis thaliana HOM05D007623 ORTHO05D009641 9.4e-31 139.8 130 53.8
Nitab4.5_0000259g0170 Nicotiana tabacum HOM05D007623 ORTHO05D009641 4.7e-30 137.5 115 60.0
Nitab4.5_0011373g0020 Nicotiana tabacum HOM05D007623 ORTHO05D009641 1.8e-29 135.6 115 60.9
CARHR013990 Cardamine hirsuta HOM05D007623 ORTHO05D009641 3.4e-28 131.3 114 57.9
BcaB08g34697 Brassica carinata HOM05D007623 ORTHO05D009641 3.8e-24 117.9 118 53.4
TAR374G1445 Trochodendron aralioides HOM05D007623 ORTHO05D009641 3.8e-24 117.9 151 41.1
CAN.G680.12 Capsicum annuum HOM05D007623 ORTHO05D009641 1.4e-21 109.4 95 60.0
SEGI_39043 Sequoiadendron giganteum HOM05D007623 ORTHO05D009641 2.3e-21 108.6 194 30.9
BcaB06g28282 Brassica carinata HOM05D007623 ORTHO05D009641 7.0e-18 97.1 115 47.8
CARHR014000 Cardamine hirsuta HOM05D007623 ORTHO05D009641 5.0e-16 90.9 136 39.7
SEGI_32122 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 6.1e-14 84.0 213 26.8
Prupe.7G020200 Prunus persica HOM05D030010 ORTHO05D021352 8.0e-14 83.6 55 72.7
Ah.10g029280 Amaranthus hybridus HOM05D007623 ORTHO05D009641 6.8e-13 80.5 140 36.4
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 5.8e-12 77.4 199 28.1
Nn1g03517 Nelumbo nucifera HOM05D002890 ORTHO05D009847 7.5e-12 77.0 221 25.3
Potri.010G137200 Populus trichocarpa HOM05D007623 ORTHO05D009641 1.7e-11 75.9 55 63.6
A06p06360 Brassica napus HOM05D007545 ORTHO05D009579 2.2e-11 75.5 192 28.1
ClCG03G004730 Citrullus lanatus HOM05D002890 ORTHO05D009847 2.9e-11 75.1 199 26.6
Aa31LG1G5330 Aethionema arabicum HOM05D007545 ORTHO05D009579 4.9e-11 74.3 193 26.9
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 4.9e-11 74.3 179 26.8
CARHR009650 Cardamine hirsuta HOM05D007545 ORTHO05D009579 4.9e-11 74.3 268 24.6
TWI63G0498 Tripterygium wilfordii HOM05D002890 ORTHO05D009847 4.9e-11 74.3 199 26.1
Lsat_1_v5_gn_9_106260 Lactuca sativa HOM05D007455 ORTHO05D009431 6.4e-11 73.9 173 24.3
Eucgr.I00129 Eucalyptus grandis HOM05D007623 ORTHO05D009641 1.1e-10 73.2 55 58.2
C03p00670 Brassica napus HOM05D007455 ORTHO05D009431 1.4e-10 72.8 183 24.6
BolC3t12630H Brassica oleracea HOM05D007455 ORTHO05D009431 1.4e-10 72.8 183 24.6
BraA06t23847Z Brassica rapa HOM05D007545 ORTHO05D009579 1.4e-10 72.8 192 27.6
AT1G09680 Arabidopsis thaliana HOM05D007545 ORTHO05D009579 1.9e-10 72.4 269 24.2
BcaB01g06086 Brassica carinata HOM05D007455 ORTHO05D009431 2.4e-10 72.0 183 24.0
Sed0010805 Sechium edule HOM05D002890 ORTHO05D009847 2.4e-10 72.0 195 26.2
TWI77G0027 Tripterygium wilfordii HOM05D007545 ORTHO05D009579 2.4e-10 72.0 164 28.7
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 4.1e-10 71.2 234 24.4
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 7.0e-10 70.5 234 24.4
C05p07760 Brassica napus HOM05D007545 ORTHO05D009579 7.0e-10 70.5 197 27.4
BolC5t29527H Brassica oleracea HOM05D007545 ORTHO05D009579 7.0e-10 70.5 197 27.4
CSS0001323 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D009847 7.0e-10 70.5 191 26.2
Aqoxy1G00452 Aquilegia oxysepala HOM05D007455 ORTHO05D009431 9.2e-10 70.1 165 24.2
A03p00400 Brassica napus HOM05D007455 ORTHO05D009431 9.2e-10 70.1 183 24.0
Cpa.g.sc998.1 Carica papaya HOM05D007623 ORTHO05D021352 9.2e-10 70.1 54 61.1
Haze_08182 Corylus avellana HOM05D007893 ORTHO05D010042 9.2e-10 70.1 204 25.5
Haze_20537 Corylus avellana HOM05D002890 ORTHO05D009847 9.2e-10 70.1 200 24.0
ATR0124G035 Amborella trichopoda HOM05D007347 ORTHO05D009296 1.2e-09 69.7 212 24.1
MBI05_g05281_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D009847 1.6e-09 69.3 184 28.3
BraA03t09431Z Brassica rapa HOM05D007455 ORTHO05D009431 2.0e-09 68.9 183 24.0
Thhalv10007116m.g Eutrema salsugineum HOM05D007545 ORTHO05D009579 2.0e-09 68.9 192 27.6
Solyc05g010790.3 Solanum lycopersicum HOM05D007623 ORTHO05D009641 2.0e-09 68.9 82 41.5
Prupe.3G166000 Prunus persica HOM05D007545 ORTHO05D009579 2.7e-09 68.6 196 26.5
arahy.Tifrunner.gnm1.ann1.GQ8ZCN Arachis hypogaea HOM05D002890 ORTHO05D009847 3.5e-09 68.2 186 25.8
COL.COLO4_31777 Corchorus olitorius HOM05D002890 ORTHO05D009847 4.6e-09 67.8 199 24.1
Gorai.009G366400 Gossypium raimondii HOM05D007291 ORTHO05D009038 6.0e-09 67.4 193 25.4
TAR371G0190 Trochodendron aralioides HOM05D007545 ORTHO05D009579 6.0e-09 67.4 163 27.6
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 7.8e-09 67.0 199 24.1
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 7.8e-09 67.0 193 25.9
Sed0013429 Sechium edule HOM05D007595 ORTHO05D009570 1.3e-08 66.2 181 28.7
Gohir.D05G340000 Gossypium hirsutum HOM05D007291 ORTHO05D009038 1.7e-08 65.9 183 24.6
SEGI_34198 Sequoiadendron giganteum HOM05D007545 ORTHO05D009579 1.7e-08 65.9 147 28.6
CSS0035807 Camellia sinensis var. sinensis HOM05D007455 ORTHO05D009431 2.3e-08 65.5 152 25.7
Eucgr.F02875 Eucalyptus grandis HOM05D007545 ORTHO05D009579 2.3e-08 65.5 192 29.2
LjContig00141g0003453 Lotus japonicus HOM05D007545 ORTHO05D009579 2.3e-08 65.5 171 29.2
Hma1.2p1_0013F.1_g008830 Hydrangea macrophylla HOM05D007358 ORTHO05D009117 3.0e-08 65.1 237 23.6
PSO017G5257 Papaver somniferum HOM05D007545 ORTHO05D009579 3.0e-08 65.1 174 27.6
Lj4g0000542 Lotus japonicus HOM05D002890 ORTHO05D009847 3.9e-08 64.7 183 27.9
ATR0661G317 Amborella trichopoda HOM05D007545 ORTHO05D009579 5.0e-08 64.3 192 26.0
FAN19G0914 Fragaria x ananassa HOM05D007545 ORTHO05D009579 6.6e-08 63.9 177 26.6
Gohir.D04G161400 Gossypium hirsutum HOM05D006931 ORTHO05D008782 6.6e-08 63.9 150 24.7
PSO339G2893 Papaver somniferum HOM05D007455 ORTHO05D009431 6.6e-08 63.9 171 24.0
RcHm_v2.0_Chr3g0491601 Rosa chinensis HOM05D007545 ORTHO05D009579 6.6e-08 63.9 204 25.5
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 6.6e-08 63.9 213 24.4
Thecc.01G192500 Theobroma cacao HOM05D006931 ORTHO05D008782 6.6e-08 63.9 158 24.7
MD09G1028300 Malus domestica HOM05D007358 ORTHO05D009117 8.6e-08 63.5 220 25.0
Medtr4g075270 Medicago truncatula HOM05D007212 ORTHO05D009094 8.6e-08 63.5 201 27.9
CAN.G108.28 Capsicum annuum HOM05D007358 ORTHO05D009117 1.9e-07 62.4 221 28.5
Dinv34879 Davidia involucrata HOM05D007347 ORTHO05D009296 1.9e-07 62.4 154 25.3
Gorai.004G048700 Gossypium raimondii HOM05D007545 ORTHO05D009579 1.9e-07 62.4 175 27.4
Oeu030299.1 Olea europaea HOM05D007545 ORTHO05D009579 2.5e-07 62.0 180 28.9
SEGI_33508 Sequoiadendron giganteum HOM05D006858 ORTHO05D008767 2.5e-07 62.0 157 26.1
Thecc.07G187000 Theobroma cacao HOM05D007291 ORTHO05D009038 2.5e-07 62.0 157 25.5
TPR.G14066 Trifolium pratense HOM05D007358 ORTHO05D009117 2.5e-07 62.0 266 22.2
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 3.3e-07 61.6 125 28.0
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 3.3e-07 61.6 209 23.4
Gorai.012G149400 Gossypium raimondii HOM05D006931 ORTHO05D008782 3.3e-07 61.6 150 24.0
HanXRQChr14g0444491 Helianthus annuus HOM05D007291 ORTHO05D009038 3.3e-07 61.6 234 19.7
Migut.K00924 Erythranthe guttata HOM05D007545 ORTHO05D009579 4.3e-07 61.2 203 27.1
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 5.6e-07 60.8 171 26.3
Gorai.004G065800 Gossypium raimondii HOM05D007893 ORTHO05D010042 5.6e-07 60.8 191 25.1
SGA_v2.0_scaffold24G10272 Striga asiatica HOM05D007639 ORTHO05D009509 5.6e-07 60.8 190 26.8
Sed0004069 Sechium edule HOM05D007545 ORTHO05D009579 7.3e-07 60.5 161 29.2
Atru.chr13.2096 Acer truncatum HOM05D007291 ORTHO05D009038 9.5e-07 60.1 179 25.7
Lj3g0013378 Lotus japonicus HOM05D006931 ORTHO05D008782 9.5e-07 60.1 173 23.7
Lj3g0024796 Lotus japonicus HOM05D006931 ORTHO05D008782 9.5e-07 60.1 173 23.7
SGA_v2.0_scaffold496G52473 Striga asiatica HOM05D007455 ORTHO05D009431 1.2e-06 59.7 160 24.4
MELO3C025970.2 Cucumis melo HOM05D006931 ORTHO05D008782 1.6e-06 59.3 157 23.6
FAN26G0753 Fragaria x ananassa HOM05D007545 ORTHO05D009579 1.6e-06 59.3 177 26.0
Haze_20536 Corylus avellana HOM05D002890 ORTHO05D009847 2.8e-06 58.5 163 23.3
Gohir.A04G119800 Gossypium hirsutum HOM05D006931 ORTHO05D008782 2.8e-06 58.5 145 24.1
Gorai.009G365100 Gossypium raimondii HOM05D007291 ORTHO05D009038 3.6e-06 58.2 168 26.8
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 3.6e-06 58.2 224 25.0
SalBow6G1669 Salvia bowleyana HOM05D007358 ORTHO05D009117 3.6e-06 58.2 122 30.3
ClCG05G002930 Citrullus lanatus HOM05D007595 ORTHO05D009570 4.7e-06 57.8 178 23.6
ECA232G4213 Erigeron canadensis HOM05D007455 ORTHO05D009431 4.7e-06 57.8 141 24.1
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 4.7e-06 57.8 203 24.1
SEGI_06868 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 4.7e-06 57.8 213 23.5
TWI60G0064 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 4.7e-06 57.8 193 26.4
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 6.2e-06 57.4 264 26.5
CsaV3_6G009550 Cucumis sativus L. HOM05D006931 ORTHO05D008782 6.2e-06 57.4 150 25.3
Rhsim01G0212700 Rhododendron simsii HOM05D006931 ORTHO05D008782 6.2e-06 57.4 132 28.8
SHI10148 Sapria himalayana HOM05D006931 ORTHO05D008782 6.2e-06 57.4 122 28.7
TAR629G3292 Trochodendron aralioides HOM05D006931 ORTHO05D008782 6.2e-06 57.4 118 32.2
Sed0019973 Sechium edule HOM05D006931 ORTHO05D008782 8.0e-06 57.0 149 24.2


User provided reference genes

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