Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 2.9e-84 315.1 149 100.0
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 4.0e-57 224.9 150 72.7
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 2.7e-53 212.2 145 67.6
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 3.5e-53 211.8 145 69.0
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 6.0e-53 211.1 138 71.0
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 5.0e-52 208.0 145 67.6
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.6e-52 207.6 136 69.9
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 8.6e-52 207.2 145 67.6
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 8.6e-52 207.2 145 67.6
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 8.6e-52 207.2 145 67.6
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 4.3e-51 204.9 145 66.9
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.3e-51 204.9 145 66.9
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 5.6e-51 204.5 145 66.2
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.5e-51 203.8 140 68.6
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.2e-50 203.4 139 67.6
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.7e-50 201.4 136 67.6
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.0e-50 200.7 136 67.6
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 1.4e-49 199.9 136 67.6
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 1.4e-49 199.9 136 65.4
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 1.8e-49 199.5 136 66.2
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 1.8e-49 199.5 137 67.9
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 2.3e-49 199.1 136 65.4
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 3.1e-49 198.7 145 66.9
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 4.0e-49 198.4 138 67.4
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 4.0e-49 198.4 147 65.3
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 5.2e-49 198.0 140 65.0
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 6.8e-49 197.6 141 63.8
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.8e-49 197.6 141 63.8
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 1.5e-48 196.4 134 67.9
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 2.0e-48 196.1 136 65.4
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.0e-48 196.1 136 65.4
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 3.4e-48 195.3 135 65.9
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 3.4e-48 195.3 141 63.8
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.4e-48 194.9 136 64.7
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 5.8e-48 194.5 135 65.9
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 7.5e-48 194.1 148 62.8
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 1.3e-47 193.4 136 66.2
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 1.3e-47 193.4 146 61.0
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 1.7e-47 193.0 145 61.4
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 3.7e-47 191.8 140 60.7
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 3.7e-47 191.8 137 61.3
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 3.7e-47 191.8 145 60.0
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 4.9e-47 191.4 137 61.3
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 4.9e-47 191.4 137 67.2
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 6.4e-47 191.0 141 60.3
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 8.3e-47 190.7 137 61.3
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 1.4e-46 189.9 142 59.9
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 1.4e-46 189.9 137 60.6
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 1.4e-46 189.9 148 60.1
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 1.4e-46 189.9 142 59.9
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 1.9e-46 189.5 141 58.9
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 2.4e-46 189.1 134 64.2
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 3.2e-46 188.7 136 62.5
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 4.1e-46 188.3 140 59.3
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 5.4e-46 188.0 148 60.1
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 5.4e-46 188.0 135 63.7
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 9.2e-46 187.2 136 61.8
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 9.2e-46 187.2 135 63.7
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 1.2e-45 186.8 133 64.7
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.2e-45 186.8 136 61.8
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 2.0e-45 186.0 135 62.2
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 3.5e-45 185.3 137 59.9
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 3.5e-45 185.3 136 62.5
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 3.5e-45 185.3 145 59.3
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 4.6e-45 184.9 150 62.0
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 6.0e-45 184.5 137 64.2
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 7.8e-45 184.1 135 61.5
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 1.0e-44 183.7 143 59.4
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 1.7e-44 183.0 135 59.3
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.7e-44 183.0 135 63.0
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.7e-44 183.0 135 63.0
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 2.3e-44 182.6 136 61.0
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 2.3e-44 182.6 135 60.7
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 3.9e-44 181.8 145 60.7
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 3.9e-44 181.8 148 60.1
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 5.0e-44 181.4 135 61.5
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 5.0e-44 181.4 141 60.3
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 6.6e-44 181.0 141 61.0
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 8.6e-44 180.6 138 59.4
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 8.6e-44 180.6 138 59.4
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 8.6e-44 180.6 137 59.1
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.1e-43 180.3 136 61.0
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 1.5e-43 179.9 136 58.8
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 1.5e-43 179.9 127 65.4
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.5e-43 179.9 136 61.0
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.9e-43 179.5 140 57.9
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.9e-43 179.5 140 57.9
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 2.5e-43 179.1 144 61.1
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 2.5e-43 179.1 139 62.6
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 3.3e-43 178.7 136 58.8
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 3.3e-43 178.7 138 60.9
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 3.3e-43 178.7 136 64.0
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 4.3e-43 178.3 124 66.1
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 5.6e-43 177.9 137 58.4
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 5.6e-43 177.9 140 57.9
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 9.5e-43 177.2 145 57.9
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 9.5e-43 177.2 136 61.0
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 1.6e-42 176.4 139 61.2
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 2.8e-42 175.6 135 57.0
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.8e-42 175.6 178 50.6
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.8e-42 175.6 133 60.2
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 2.8e-42 175.6 150 60.0
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 2.8e-42 175.6 137 59.1
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 6.2e-42 174.5 141 58.9
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 6.2e-42 174.5 138 62.3
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 6.2e-42 174.5 144 58.3
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 1.8e-41 172.9 136 59.6
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.3e-41 172.6 137 56.9
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 3.1e-41 172.2 138 58.0
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 6.8e-41 171.0 135 57.8
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 8.9e-41 170.6 135 57.8
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 2.6e-40 169.1 135 59.3
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 3.4e-40 168.7 130 59.2
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 4.4e-40 168.3 146 58.2
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 7.5e-40 167.5 138 58.7
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 2.9e-39 165.6 131 58.8
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 2.9e-39 165.6 137 56.9
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 3.7e-39 165.2 138 55.1
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 3.7e-39 165.2 138 55.1
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 3.7e-39 165.2 135 57.8
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 4.9e-39 164.9 135 55.6
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 4.9e-39 164.9 135 55.6
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.9e-39 164.9 208 44.7
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 4.9e-39 164.9 140 57.9
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 6.4e-39 164.5 137 55.5
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 1.1e-38 163.7 135 57.0
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 3.2e-38 162.2 138 55.1
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 7.1e-38 161.0 136 56.6
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 1.2e-37 160.2 136 54.4
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 2.7e-37 159.1 133 52.6
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 2.7e-37 159.1 137 59.1
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 2.7e-37 159.1 133 51.9
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 1.3e-36 156.8 136 53.7
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.0e-36 155.6 137 56.9
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 5.1e-36 154.8 133 54.1
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 1.5e-35 153.3 144 53.5
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 7.3e-35 151.0 136 50.7
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 2.1e-34 149.4 136 55.1
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 4.7e-34 148.3 135 52.6
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 6.2e-34 147.9 133 51.9
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 8.1e-34 147.5 136 55.1
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 1.4e-33 146.7 137 53.3
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 4.0e-33 145.2 93 65.6
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 4.0e-33 145.2 136 46.3
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 6.8e-33 144.4 134 53.7
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 5.8e-32 141.4 115 61.7
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 7.1e-30 134.4 144 45.1
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 1.6e-29 133.3 114 57.9
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 4.6e-29 131.7 93 58.1
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 7.8e-29 131.0 143 45.5
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 3.6e-26 122.1 135 44.4
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 1.1e-25 120.6 134 44.0
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 9.9e-24 114.0 126 46.0
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 7.3e-19 97.8 50 74.0
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.6e-18 96.7 117 44.4
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.6e-18 96.7 103 49.5
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 2.8e-18 95.9 71 74.6
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 2.4e-17 92.8 129 40.3
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 4.0e-17 92.0 75 68.0
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 1.5e-16 90.1 98 49.0
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.7e-15 86.7 67 68.7
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 4.9e-15 85.1 72 47.2
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 4.9e-15 85.1 67 59.7
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 1.9e-14 83.2 126 34.9
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 5.4e-14 81.6 50 60.0
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 1.1e-11 73.9 79 48.1
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 4.3e-11 72.0 60 58.3
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 2.4e-09 66.2 40 55.0
FvH4_6g51211 Fragaria vesca HOM05D004290 ORTHO05D005025 1.2e-08 63.9 42 73.8


User provided reference genes

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