Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1037800 Malus domestica HOM05D000260 ORTHO05D022715 6.5e-145 517.3 249 100.0
MD16G1038600 Malus domestica HOM05D000072 ORTHO05D000026 2.6e-101 372.5 236 78.4
MD13G1036700 Malus domestica HOM05D000072 ORTHO05D000026 1.6e-90 336.7 232 75.0
MD16G1038700 Malus domestica HOM05D000072 ORTHO05D000026 1.5e-85 320.1 223 74.4
MD16G1038000 Malus domestica HOM05D000072 ORTHO05D000026 2.8e-79 299.3 236 67.8
FvH4_4g26841 Fragaria vesca HOM05D000260 ORTHO05D000318 2.1e-58 229.9 239 51.9
FAN12G0686 Fragaria x ananassa HOM05D000260 ORTHO05D000318 1.0e-57 227.6 239 51.5
FAN12G0680 Fragaria x ananassa HOM05D000260 ORTHO05D000318 1.3e-57 227.3 239 51.5
FAN22G0230 Fragaria x ananassa HOM05D000260 ORTHO05D000318 2.8e-55 219.5 239 51.5
FAN17G2038 Fragaria x ananassa HOM05D000260 ORTHO05D000318 6.9e-54 214.9 241 48.1
FvH4_4g26892 Fragaria vesca HOM05D000072 ORTHO05D000026 3.8e-52 209.1 235 48.1
FAN12G1998 Fragaria x ananassa HOM05D000072 ORTHO05D000026 1.6e-47 193.7 242 45.9
FAN07G2609 Fragaria x ananassa HOM05D000072 ORTHO05D022715 2.1e-47 193.4 250 46.0
FAN07G2859 Fragaria x ananassa HOM05D000260 ORTHO05D000318 1.4e-46 190.7 251 45.4
RcHm_v2.0_Chr4g0434531 Rosa chinensis HOM05D000260 ORTHO05D000318 4.0e-46 189.1 240 44.6
FvH4_4g26890 Fragaria vesca HOM05D000072 ORTHO05D000026 2.6e-45 186.4 251 44.2
FvH4_4g26940 Fragaria vesca HOM05D000072 ORTHO05D000026 3.0e-41 172.9 241 44.8
FAN12G2395 Fragaria x ananassa HOM05D000072 ORTHO05D000026 1.9e-40 170.2 241 44.4
Prupe.1G315200 Prunus persica HOM05D000260 ORTHO05D022715 1.9e-40 170.2 245 45.7
FAN12G0737 Fragaria x ananassa HOM05D000260 ORTHO05D022715 2.5e-40 169.9 244 43.9
FAN12G3479 Fragaria x ananassa HOM05D000072 ORTHO05D001031 3.3e-40 169.5 244 44.3
FAN09G2053 Fragaria x ananassa HOM05D000260 ORTHO05D022715 4.3e-40 169.1 213 46.5
RcHm_v2.0_Chr4g0434651 Rosa chinensis HOM05D000260 ORTHO05D022715 3.7e-39 166.0 252 42.1
Prupe.1G315400 Prunus persica HOM05D000072 ORTHO05D000026 4.1e-38 162.5 220 45.0
FAN07G0021 Fragaria x ananassa HOM05D000260 ORTHO05D000318 4.5e-37 159.1 224 43.3
FAN17G3025 Fragaria x ananassa HOM05D000072 ORTHO05D000026 1.3e-36 157.5 217 43.3
FAN17G2553 Fragaria x ananassa HOM05D000072 ORTHO05D000026 4.3e-32 142.5 219 41.1
FvH4_4g26840 Fragaria vesca HOM05D000260 ORTHO05D000318 1.0e-28 131.3 241 39.0
FAN12G1426 Fragaria x ananassa HOM05D000072 ORTHO05D000026 1.3e-28 131.0 241 38.6
Potri.010G121350 Populus trichocarpa HOM05D000072 ORTHO05D000026 6.7e-25 118.6 233 35.6
Thecc.02G223900 Theobroma cacao HOM05D016466 ORTHO05D010362 1.7e-20 104.0 259 33.6
QL01p040218 Quercus lobata HOM05D000260 ORTHO05D000318 5.5e-19 99.0 249 34.1
QL05p056320 Quercus lobata HOM05D000072 ORTHO05D000026 5.5e-19 99.0 261 33.0
GSVIVG01011850001 Vitis vinifera HOM05D000260 ORTHO05D000318 1.6e-18 97.4 239 36.4
Actinidia16679 Actinidia chinensis HOM05D000260 ORTHO05D000318 2.1e-18 97.1 248 32.3
QL01p002259 Quercus lobata HOM05D000072 ORTHO05D000026 2.7e-18 96.7 245 35.5
RcHm_v2.0_Chr4g0434681 Rosa chinensis HOM05D000072 ORTHO05D000026 3.9e-17 92.8 136 38.2
QL01p010994 Quercus lobata HOM05D000072 ORTHO05D000026 1.3e-15 87.8 233 34.3
Haze_00644 Corylus avellana HOM05D000260 ORTHO05D000318 1.7e-15 87.4 254 32.3
Dinv31610 Davidia involucrata HOM05D000260 ORTHO05D010362 3.7e-15 86.3 250 31.6
Thhalv10007057m.g Eutrema salsugineum HOM05D000260 ORTHO05D000318 4.8e-15 85.9 215 28.8
QL01p010170 Quercus lobata HOM05D000260 ORTHO05D000318 4.8e-15 85.9 234 32.5
CSS0009724 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D000318 6.3e-15 85.5 247 30.8
BraA09t39426Z Brassica rapa HOM05D000260 ORTHO05D000318 8.2e-15 85.1 231 29.9
Peaxi162Scf00564g00519 Petunia axillaris HOM05D000260 ORTHO05D000318 1.4e-14 84.3 255 31.8
Manes.14G105800 Manihot esculenta HOM05D000260 ORTHO05D000318 3.1e-14 83.2 221 33.9
Carub.0001s2511 Capsella rubella HOM05D000031 ORTHO05D000030 9.1e-14 81.6 227 29.1
Carub.0001s2512 Capsella rubella HOM05D000260 ORTHO05D000318 9.1e-14 81.6 227 29.5
Nitab4.5_0004981g0060 Nicotiana tabacum HOM05D000260 ORTHO05D000318 9.1e-14 81.6 242 30.6
BcaB03g14039 Brassica carinata HOM05D000260 ORTHO05D000318 1.6e-13 80.9 198 30.8
CSS0000188 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D000318 1.6e-13 80.9 231 30.3
CSS0044393 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D000318 1.6e-13 80.9 231 30.3
QL01p040233 Quercus lobata HOM05D000260 ORTHO05D000318 1.6e-13 80.9 229 33.6
Nitab4.5_0000057g0070 Nicotiana tabacum HOM05D000260 ORTHO05D000318 2.0e-13 80.5 254 30.3
Nitab4.5_0000057g0100 Nicotiana tabacum HOM05D000072 ORTHO05D000026 2.0e-13 80.5 251 29.5
CSS0009234 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D000318 2.6e-13 80.1 222 32.4
CSS0018926 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D000318 2.6e-13 80.1 222 32.4
CiPaw.06G016900 Carya illinoinensis HOM05D000072 ORTHO05D000026 2.6e-13 80.1 237 27.8
CiPaw.06G017100 Carya illinoinensis HOM05D000260 ORTHO05D000318 2.6e-13 80.1 237 27.8
PGSC0003DMG400006000 Solanum tuberosum HOM05D000072 ORTHO05D000026 2.6e-13 80.1 230 31.3
Hma1.2p1_2390F.1_g321190 Hydrangea macrophylla HOM05D000072 ORTHO05D000026 3.5e-13 79.7 248 31.9
Atru.chr11.210 Acer truncatum HOM05D000260 ORTHO05D000318 4.5e-13 79.3 229 30.6
C05p25080 Brassica napus HOM05D000072 ORTHO05D000026 4.5e-13 79.3 233 27.9
CSS0014137 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D000318 2.2e-12 77.0 245 28.6
CANSAT01G0046 Cannabis sativa HOM05D000260 ORTHO05D000318 5.0e-12 75.9 212 28.3
CARHR026090 Cardamine hirsuta HOM05D000260 ORTHO05D000318 6.5e-12 75.5 225 28.9
Peaxi162Scf00047g01420 Petunia axillaris HOM05D000072 ORTHO05D000026 6.5e-12 75.5 269 27.9
QL05p057061 Quercus lobata HOM05D046585 ORTHO05D026090 1.1e-11 74.7 159 36.5
A07p12570 Brassica napus HOM05D000260 ORTHO05D000318 5.5e-11 72.4 233 28.3
BcaC06g35216 Brassica carinata HOM05D000260 ORTHO05D000318 2.7e-10 70.1 195 29.7
C07p18570 Brassica napus HOM05D000260 ORTHO05D000318 2.7e-10 70.1 195 29.7
BolC7t42368H Brassica oleracea HOM05D000260 ORTHO05D000318 2.7e-10 70.1 195 29.7
CSS0013107 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D000318 6.1e-10 68.9 213 30.0
Migut.L01035 Erythranthe guttata HOM05D000260 ORTHO05D000318 8.0e-10 68.6 211 28.9
BraA07t29035Z Brassica rapa HOM05D000260 ORTHO05D000318 1.0e-09 68.2 233 27.5
Migut.L01038 Erythranthe guttata HOM05D000072 ORTHO05D000026 1.0e-09 68.2 219 29.2
Dinv21045 Davidia involucrata HOM05D008908 ORTHO05D010362 1.4e-09 67.8 180 31.1
BraA09t39428Z Brassica rapa HOM05D000072 ORTHO05D000026 6.7e-09 65.5 183 32.2
QL01p010155 Quercus lobata HOM05D000260 ORTHO05D000318 8.8e-09 65.1 157 35.0
Lj5g0003818 Lotus japonicus HOM05D000072 ORTHO05D000026 3.3e-08 63.2 239 28.5
Solyc04g007390.4 Solanum lycopersicum HOM05D000260 ORTHO05D000318 1.3e-07 61.2 246 26.4
Oeu054974.1 Olea europaea HOM05D000260 ORTHO05D000318 1.7e-07 60.8 198 30.8
Sopen04g002450 Solanum pennellii HOM05D000260 ORTHO05D000318 8.2e-07 58.5 225 26.7
arahy.Tifrunner.gnm1.ann1.X7PJ8H Arachis hypogaea HOM05D000260 ORTHO05D000318 1.4e-06 57.8 216 27.3


User provided reference genes

Program Settings