Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1734.5 843 100.0
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1663.3 842 95.6
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 0.0e+00 1551.6 841 89.1
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1465.7 834 85.1
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 0.0e+00 1456.8 833 84.4
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1454.1 833 84.2
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1453.3 833 84.0
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1451.0 839 83.8
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1449.5 833 84.0
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1449.1 839 83.8
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 0.0e+00 1383.6 835 79.5
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1374.0 841 78.1
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 0.0e+00 1368.6 833 78.4
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 0.0e+00 1347.0 842 75.4
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 0.0e+00 1335.5 829 76.8
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 0.0e+00 1327.0 841 76.9
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1323.9 833 76.6
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 0.0e+00 1319.7 828 76.2
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 0.0e+00 1318.9 844 75.1
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 0.0e+00 1317.8 965 67.9
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 0.0e+00 1317.0 831 74.5
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1315.4 829 75.8
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 0.0e+00 1313.1 828 75.2
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 0.0e+00 1312.7 845 74.2
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 0.0e+00 1312.4 837 75.5
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 0.0e+00 1310.4 830 75.7
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 0.0e+00 1299.3 843 74.5
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 0.0e+00 1298.1 831 75.5
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 0.0e+00 1298.1 830 74.6
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1295.4 838 74.5
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 0.0e+00 1294.6 832 73.4
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 0.0e+00 1294.3 835 74.3
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1293.5 831 74.7
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1291.6 833 75.4
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 0.0e+00 1290.8 830 73.4
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 0.0e+00 1290.4 833 74.5
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1289.6 832 73.9
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 0.0e+00 1289.2 838 74.2
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 0.0e+00 1288.9 832 73.8
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 0.0e+00 1288.9 830 74.3
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 0.0e+00 1288.1 838 74.1
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 0.0e+00 1287.3 832 74.2
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1285.0 837 74.3
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 0.0e+00 1284.6 832 74.0
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 0.0e+00 1284.6 833 73.7
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 0.0e+00 1284.2 843 73.7
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 0.0e+00 1283.9 840 73.1
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1279.2 833 73.5
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 0.0e+00 1278.5 834 73.9
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1278.5 829 73.3
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 0.0e+00 1277.3 837 73.0
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 0.0e+00 1276.5 835 72.0
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 0.0e+00 1274.6 838 72.4
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 0.0e+00 1274.2 840 72.7
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1273.5 834 72.4
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1273.1 844 73.5
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1271.1 834 72.5
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 0.0e+00 1266.9 838 72.4
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 0.0e+00 1263.8 836 72.4
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1256.9 831 72.6
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 0.0e+00 1254.2 871 70.0
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 0.0e+00 1254.2 825 72.6
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1251.9 847 71.1
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 0.0e+00 1250.7 836 72.4
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1244.2 835 72.0
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1239.9 840 72.5
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 0.0e+00 1234.2 839 70.7
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 0.0e+00 1230.7 831 71.2
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 0.0e+00 1216.1 833 70.1
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1214.5 775 75.6
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 0.0e+00 1210.7 834 69.7
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1196.8 843 68.4
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 0.0e+00 1187.2 835 69.9
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1179.5 850 67.3
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 0.0e+00 1178.3 940 63.4
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 0.0e+00 1171.0 736 75.4
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 0.0e+00 1170.2 759 74.0
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 0.0e+00 1168.3 832 67.2
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 0.0e+00 1152.9 834 66.5
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 0.0e+00 1148.7 839 65.9
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 0.0e+00 1148.3 836 66.6
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 0.0e+00 1144.8 830 67.0
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1144.0 830 66.7
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 0.0e+00 1143.3 830 65.8
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 0.0e+00 1142.9 834 66.3
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 0.0e+00 1142.5 839 65.3
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 0.0e+00 1141.3 834 66.7
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1140.6 830 66.5
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 0.0e+00 1140.2 831 66.7
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 0.0e+00 1139.8 834 66.4
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1139.4 829 66.6
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 0.0e+00 1137.9 836 66.7
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1136.7 831 66.2
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1135.2 835 66.3
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 0.0e+00 1095.9 837 64.0
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 0.0e+00 1084.7 833 63.0
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 1.6e-299 1032.7 668 73.5
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 5.0e-298 1027.7 829 61.0
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 4.3e-281 971.5 828 60.1
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 5.9e-275 951.0 637 71.6
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 5.8e-270 934.5 584 75.5
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 1.1e-247 860.5 898 50.1
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 5.8e-246 854.7 855 50.3
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 9.9e-246 854.0 854 51.5
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 1.9e-217 760.0 827 49.9
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 1.5e-172 610.9 464 64.0
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 1.9e-172 610.5 401 71.8
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 2.1e-150 537.3 310 90.6
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 1.7e-149 534.3 402 65.2
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 1.4e-138 498.0 364 64.6
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 1.9e-132 477.6 372 60.2
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.6e-123 448.0 264 79.9
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 8.7e-109 399.1 192 99.0
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 1.9e-108 397.9 491 48.1
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 3.7e-107 393.7 833 35.5
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 1.3e-104 385.2 863 32.3
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 3.3e-100 370.5 231 75.8
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 6.9e-98 362.8 1139 26.5
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 4.2e-95 353.6 195 80.5
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.2e-94 352.1 303 57.4
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 7.9e-94 349.4 266 62.4
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 2.4e-90 337.8 203 79.3
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 4.1e-90 337.0 783 32.1
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 7.2e-79 299.7 240 64.6
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 1.2e-68 265.8 589 32.8
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 2.1e-54 218.4 216 50.5
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 1.9e-42 178.7 213 45.1
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 1.9e-42 178.7 213 45.1
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.2e-42 177.9 154 57.1
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.1e-37 162.9 102 72.5
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 1.9e-34 152.1 97 71.1
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 1.2e-33 149.4 124 60.5
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 3.9e-32 144.4 97 73.2
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 6.4e-27 127.1 77 77.9
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 8.3e-27 126.7 76 75.0
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 9.2e-26 123.2 181 42.0
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 1.8e-21 109.0 68 73.5
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.2e-20 106.3 62 71.0
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 1.5e-20 105.9 128 43.0
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.6e-20 105.1 64 75.0
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 4.4e-20 104.4 60 80.0
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 2.2e-19 102.1 113 49.6
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 3.2e-18 98.2 53 77.4
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 4.2e-18 97.8 82 57.3
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 7.8e-17 93.6 109 45.0
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 1.5e-15 89.4 135 40.7
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 9.6e-15 86.7 58 60.3
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 5.8e-12 77.4 86 51.2
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 1.1e-10 73.2 102 38.2
Aa31sc210G50 Aethionema arabicum HOM05D004768 ORTHO05D005812 1.5e-07 62.8 162 27.2
AL8G40810 Arabidopsis lyrata HOM05D001610 ORTHO05D001585 1.9e-07 62.4 251 24.7
Mapoly0049s0059 Marchantia polymorpha HOM05D005323 ORTHO05D006820 1.3e-06 59.7 118 30.5
TPR.G16509 Trifolium pratense HOM05D001843 ORTHO05D008358 2.1e-06 58.9 178 28.1
Cfa027159 Carpinus fangiana HOM05D004758 ORTHO05D006063 3.6e-06 58.2 192 26.6
Hund16370 Selenicereus undatus HOM05D002634 ORTHO05D003100 4.8e-06 57.8 112 33.0
RcHm_v2.0_Chr7g0200991 Rosa chinensis HOM05D004962 ORTHO05D006249 6.2e-06 57.4 27 88.9
CSS0009653 Camellia sinensis var. sinensis HOM05D004669 ORTHO05D005767 8.1e-06 57.0 216 28.7
Gorai.006G187200 Gossypium raimondii HOM05D003913 ORTHO05D004803 8.1e-06 57.0 143 30.8
Psat6g019720 Pisum sativum HOM05D003913 ORTHO05D004803 8.1e-06 57.0 222 23.0
SEGI_06199 Sequoiadendron giganteum HOM05D005323 ORTHO05D006820 8.1e-06 57.0 118 30.5


User provided reference genes

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