Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1034700 Malus domestica HOM05D005638 ORTHO05D006913 8.6e-249 863.2 445 100.0
Prupe.1G319900 Prunus persica HOM05D005638 ORTHO05D006913 1.9e-211 739.2 421 90.3
FvH4_4g26400 Fragaria vesca HOM05D005638 ORTHO05D006913 5.5e-187 657.9 421 79.3
FAN12G2479 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.2e-186 656.8 421 79.1
FAN12G3267 Fragaria x ananassa HOM05D005638 ORTHO05D006913 3.6e-186 655.2 421 79.1
RcHm_v2.0_Chr4g0434031 Rosa chinensis HOM05D005638 ORTHO05D006913 3.1e-182 642.1 421 77.9
CSS0002078 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 2.9e-180 635.6 421 76.2
Ciclev10015376m.g Citrus clementina HOM05D005638 ORTHO05D006913 5.0e-180 634.8 423 78.7
CSS0005399 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 6.5e-180 634.4 421 76.2
QL01p003053 Quercus lobata HOM05D005638 ORTHO05D006913 2.7e-178 629.0 443 74.5
Haze_00683 Corylus avellana HOM05D005638 ORTHO05D006913 1.8e-177 626.3 428 75.7
Hma1.2p1_0882F.1_g232180 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 3.9e-177 625.2 421 74.6
FAN07G1772 Fragaria x ananassa HOM05D005638 ORTHO05D006913 2.6e-176 622.5 464 71.6
GSVIVG01011806001 Vitis vinifera HOM05D005638 ORTHO05D006913 2.6e-176 622.5 434 75.3
CANSAT01G0033 Cannabis sativa HOM05D005638 ORTHO05D006913 1.7e-175 619.8 417 75.1
Potri.008G126300 Populus trichocarpa HOM05D005638 ORTHO05D006913 4.8e-175 618.2 421 75.3
Sed0003483 Sechium edule HOM05D005638 ORTHO05D006913 1.8e-174 616.3 413 76.8
TWI75G0624 Tripterygium wilfordii HOM05D005638 ORTHO05D006913 2.4e-174 615.9 421 76.0
Thecc.05G134700 Theobroma cacao HOM05D005638 ORTHO05D006913 2.6e-173 612.5 419 74.9
Sabra08G0095100 Salix brachista HOM05D005638 ORTHO05D006913 4.5e-173 611.7 428 73.6
MELO3C034164.2 Cucumis melo HOM05D005638 ORTHO05D006913 2.5e-171 605.9 423 74.2
CAN.G1489.15 Capsicum annuum HOM05D005638 ORTHO05D006913 4.2e-171 605.1 421 71.3
CsaV3_5G010590 Cucumis sativus L. HOM05D005638 ORTHO05D006913 5.5e-171 604.7 423 73.3
ClCG07G004650 Citrullus lanatus HOM05D005638 ORTHO05D006913 1.6e-170 603.2 422 74.4
Eucgr.H00037 Eucalyptus grandis HOM05D005638 ORTHO05D006913 3.0e-169 599.0 421 70.5
Gorai.013G001800 Gossypium raimondii HOM05D005638 ORTHO05D006913 5.2e-169 598.2 419 72.8
PGSC0003DMG401030517 Solanum tuberosum HOM05D005638 ORTHO05D006913 1.5e-168 596.7 421 70.1
Sopen05g004380 Solanum pennellii HOM05D005638 ORTHO05D006913 2.0e-168 596.3 421 69.8
Solyc05g008540.3 Solanum lycopersicum HOM05D005638 ORTHO05D006913 2.6e-168 595.9 421 70.1
COL.COLO4_22224 Corchorus olitorius HOM05D005638 ORTHO05D006913 4.4e-168 595.1 418 72.2
arahy.Tifrunner.gnm1.ann1.CLD3MC Arachis hypogaea HOM05D005638 ORTHO05D006913 7.5e-168 594.3 421 71.5
Cc11_g09280 Coffea canephora HOM05D005638 ORTHO05D006913 7.5e-168 594.3 421 71.0
arahy.Tifrunner.gnm1.ann1.NRC6UQ Arachis hypogaea HOM05D005638 ORTHO05D006913 2.2e-167 592.8 421 71.5
Gohir.A13G000300 Gossypium hirsutum HOM05D005638 ORTHO05D006913 4.8e-167 591.7 419 72.3
Nn4g24022 Nelumbo nucifera HOM05D005638 ORTHO05D006913 1.4e-166 590.1 421 72.0
FAN22G2072 Fragaria x ananassa HOM05D005638 ORTHO05D006913 5.3e-166 588.2 447 70.9
Sp2g12590 Schrenkiella parvula HOM05D005638 ORTHO05D006913 1.2e-165 587.0 421 68.9
Thhalv10000894m.g Eutrema salsugineum HOM05D005638 ORTHO05D006913 1.6e-165 586.6 427 68.9
Nitab4.5_0000350g0120 Nicotiana tabacum HOM05D005638 ORTHO05D006913 4.5e-165 585.1 436 68.1
CARHR143670 Cardamine hirsuta HOM05D005638 ORTHO05D006913 5.9e-165 584.7 421 69.1
BcaC06g31332 Brassica carinata HOM05D005638 ORTHO05D006913 7.7e-165 584.3 421 68.4
Lj5g0007245 Lotus japonicus HOM05D005638 ORTHO05D006913 7.7e-165 584.3 421 70.8
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 1.7e-164 583.2 421 68.6
ECA246G4189 Erigeron canadensis HOM05D005638 ORTHO05D006913 3.8e-164 582.0 414 72.5
Peaxi162Scf00205g01130 Petunia axillaris HOM05D005638 ORTHO05D006913 3.8e-164 582.0 421 69.6
AL5G10070 Arabidopsis lyrata HOM05D005638 ORTHO05D006913 1.5e-163 580.1 421 68.9
Carub.0005s0010 Capsella rubella HOM05D005638 ORTHO05D006913 2.5e-163 579.3 421 68.9
PGR119G2299 Punica granatum HOM05D005638 ORTHO05D006913 2.5e-163 579.3 421 70.1
Ca_30212_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 4.2e-163 578.6 418 71.3
Oeu064207.2 Olea europaea HOM05D005638 ORTHO05D006913 1.2e-162 577.0 479 63.9
THA.LOC104805050 Tarenaya hassleriana HOM05D005638 ORTHO05D006913 2.1e-162 576.2 421 69.1
Medtr1g109100 Medicago truncatula HOM05D005638 ORTHO05D006913 2.7e-162 575.9 414 70.8
Psat6g222760 Pisum sativum HOM05D005638 ORTHO05D006913 4.7e-162 575.1 412 70.9
Migut.E00391 Erythranthe guttata HOM05D005638 ORTHO05D006913 1.0e-161 573.9 421 68.6
Phvul.007G034200 Phaseolus vulgaris HOM05D005638 ORTHO05D006913 1.0e-161 573.9 421 68.9
Lalb_Chr02g0145641 Lupinus albus HOM05D005638 ORTHO05D006913 1.2e-160 570.5 418 68.4
A06p44660 Brassica napus HOM05D005638 ORTHO05D006913 1.5e-160 570.1 450 64.7
EL10Ac6g14273 Beta vulgaris HOM05D005638 ORTHO05D006913 2.0e-160 569.7 418 68.9
HanXRQChr17g0534901 Helianthus annuus HOM05D005638 ORTHO05D006913 2.0e-160 569.7 421 68.9
Lsat_1_v5_gn_3_11020 Lactuca sativa HOM05D005638 ORTHO05D006913 2.6e-160 569.3 412 70.9
C07p31590 Brassica napus HOM05D005638 ORTHO05D006913 7.5e-160 567.8 450 64.4
BcaC06g34215 Brassica carinata HOM05D005638 ORTHO05D006913 9.8e-160 567.4 450 64.4
Hund25015 Selenicereus undatus HOM05D005638 ORTHO05D006913 1.3e-159 567.0 419 69.0
Sc14g0007070 Simmondsia chinensis HOM05D005638 ORTHO05D006913 4.8e-159 565.1 419 68.7
Manes.10G073400 Manihot esculenta HOM05D005638 ORTHO05D006913 8.3e-159 564.3 421 69.6
CiPaw.05G245200 Carya illinoinensis HOM05D005638 ORTHO05D006913 1.1e-158 563.9 421 70.5
Lj2C166G5 Lonicera japonica HOM05D005638 ORTHO05D006913 3.1e-158 562.4 468 63.7
Glyma.10G268100 Glycine max HOM05D005638 ORTHO05D006913 3.5e-157 558.9 421 68.6
FAN17G1216 Fragaria x ananassa HOM05D005638 ORTHO05D006913 4.5e-157 558.5 444 68.5
Glyma.20G123000 Glycine max HOM05D005638 ORTHO05D006913 5.9e-157 558.1 421 68.6
AT2G01120 Arabidopsis thaliana HOM05D005638 ORTHO05D006913 2.3e-156 556.2 422 66.6
Duzib106G1906 Durio zibethinus HOM05D005638 ORTHO05D006913 2.3e-156 556.2 419 69.0
MSTRG.2199 Avicennia marina HOM05D005638 ORTHO05D006913 2.9e-156 555.8 421 67.9
Aa31LG2G8760 Aethionema arabicum HOM05D005638 ORTHO05D006913 8.0e-154 547.7 421 65.8
vmacro10617 Vaccinium macrocarpon HOM05D005638 ORTHO05D006913 4.0e-153 545.4 474 61.6
Aqoxy5G03877 Aquilegia oxysepala HOM05D005638 ORTHO05D006913 1.7e-151 540.0 412 68.2
Atru.chr11.333 Acer truncatum HOM05D005638 ORTHO05D006913 5.9e-149 531.6 324 82.4
BraA06t27339Z Brassica rapa HOM05D005638 ORTHO05D006913 3.9e-148 528.9 432 62.5
PSO017G2298 Papaver somniferum HOM05D005638 ORTHO05D006913 1.2e-146 523.9 438 63.2
BcaB07g30423 Brassica carinata HOM05D005638 ORTHO05D006913 2.1e-146 523.1 448 61.2
Nitab4.5_0013146g0020 Nicotiana tabacum HOM05D005638 ORTHO05D006913 8.0e-146 521.2 501 56.5
PSO478G2841 Papaver somniferum HOM05D005638 ORTHO05D006913 1.4e-145 520.4 438 62.8
Cpa.g.sc65.90 Carica papaya HOM05D005638 ORTHO05D006913 2.3e-145 519.6 386 70.7
AUR62042716 Chenopodium quinoa HOM05D005638 ORTHO05D006913 4.4e-144 515.4 459 59.9
PSO782G2730 Papaver somniferum HOM05D005638 ORTHO05D006913 2.4e-142 509.6 438 61.6
Dinv16164 Davidia involucrata HOM05D005638 ORTHO05D006913 1.7e-140 503.4 335 77.0
Os01g0683400 Oryza sativa ssp. japonica HOM05D005638 ORTHO05D006913 1.7e-140 503.4 454 58.1
HPP92_020141 Vanilla planifolia HOM05D005638 ORTHO05D006913 2.5e-139 499.6 415 60.2
ATR0691G289 Amborella trichopoda HOM05D005638 ORTHO05D006913 9.5e-139 497.7 414 63.8
SalBow8G2600 Salvia bowleyana HOM05D005638 ORTHO05D006913 9.5e-139 497.7 421 63.2
Gohir.D13G001900 Gossypium hirsutum HOM05D005638 ORTHO05D006913 1.2e-138 497.3 419 64.0
SEGI_39107 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 4.4e-136 488.8 415 60.0
MBI10_g06749_MAGBIO Magnolia biondii HOM05D005638 ORTHO05D006913 1.9e-134 483.4 373 67.0
Atru.chr11.340 Acer truncatum HOM05D005638 ORTHO05D006913 1.6e-133 480.3 322 79.5
unitig_52.g17425 Utricularia gibba HOM05D005638 ORTHO05D006913 1.7e-132 476.9 426 58.5
VMungo0720G2401 Vigna mungo HOM05D005638 ORTHO05D006913 3.9e-132 475.7 321 72.6
TAR622G0052 Trochodendron aralioides HOM05D005638 ORTHO05D006913 3.4e-120 436.0 319 74.0
Zm00001eb156550 Zea mays HOM05D005638 ORTHO05D006913 2.8e-114 416.4 412 55.3
Rhsim11G0032100 Rhododendron simsii HOM05D005638 ORTHO05D006913 6.2e-114 415.2 274 75.2
Dinv04905 Davidia involucrata HOM05D005638 ORTHO05D006913 4.6e-109 399.1 422 54.3
Ah.03g138510 Amaranthus hybridus HOM05D005638 ORTHO05D006913 4.6e-101 372.5 273 68.1
TPR.G31713 Trifolium pratense HOM05D005638 ORTHO05D006913 3.9e-100 369.4 255 72.2
Pp3c16_11150 Physcomitrium patens HOM05D005638 ORTHO05D006913 2.9e-95 353.2 429 46.2
Mapoly0031s0066 Marchantia polymorpha HOM05D005638 ORTHO05D006913 1.9e-94 350.5 425 48.5
Cfa015815 Carpinus fangiana HOM05D005638 ORTHO05D006913 3.9e-92 342.8 229 78.2
Ca_23705_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 3.9e-92 342.8 253 71.1
Hma1.2p1_0882F.1_g232170 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 3.7e-90 336.3 229 75.1
SGA_v2.0_scaffold170G38821 Striga asiatica HOM05D005638 ORTHO05D006913 1.4e-89 334.3 277 63.5
A02p31700 Brassica napus HOM05D005638 ORTHO05D006913 3.1e-89 333.2 313 56.5
BcaC03g16999 Brassica carinata HOM05D005638 ORTHO05D006913 2.0e-88 330.5 241 66.8
CBR_g38777 Chara braunii HOM05D005638 ORTHO05D006913 3.4e-88 329.7 395 46.3
C02p49080 Brassica napus HOM05D005638 ORTHO05D006913 1.3e-82 311.2 306 53.6
BolC2t10998H Brassica oleracea HOM05D005638 ORTHO05D006913 4.5e-80 302.8 424 43.9
AUR62014211 Chenopodium quinoa HOM05D005638 ORTHO05D006913 5.0e-79 299.3 375 49.1
MD13G1032700 Malus domestica HOM05D005638 ORTHO05D006913 6.5e-79 298.9 166 93.4
AagrBONN_evm.TU.Sc2ySwM_344.3309 Anthoceros agrestis HOM05D005638 ORTHO05D006913 3.0e-76 290.0 377 45.9
PSO170G3371 Papaver somniferum HOM05D005638 ORTHO05D006913 2.7e-69 266.9 241 58.1
MD13G1032600 Malus domestica HOM05D005638 ORTHO05D006913 2.6e-59 233.8 169 75.7
Hma1.2p1_0882F.1_g232190 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 1.1e-57 228.4 136 79.4
Thecc.06G067600 Theobroma cacao HOM05D005638 ORTHO05D006913 1.8e-57 227.6 157 73.9
SEGI_20204 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 7.2e-54 215.7 179 59.2
PRCOL_00001621 Prasinoderma coloniale HOM05D005638 ORTHO05D006913 2.7e-53 213.8 422 36.0
CDE11G0817 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 2.5e-46 190.7 122 77.9
SMO351G0247 Selaginella moellendorffii HOM05D005638 ORTHO05D006913 4.2e-46 189.9 416 33.4
BraA02t08176Z Brassica rapa HOM05D005638 ORTHO05D006913 9.8e-35 152.1 107 74.8
MCO02G007 Micromonas commoda HOM05D005638 ORTHO05D006913 8.3e-34 149.1 320 33.4
Rhsim11G0032000 Rhododendron simsii HOM05D005638 ORTHO05D006913 1.6e-29 134.8 171 46.8
CDE11G0802 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 2.3e-28 131.0 90 66.7
TPR.G15740 Trifolium pratense HOM05D005638 ORTHO05D006913 1.5e-27 128.3 87 73.6
TPR.G7417 Trifolium pratense HOM05D005638 ORTHO05D006913 2.0e-24 117.9 107 60.7
Cfa022174 Carpinus fangiana HOM05D005638 ORTHO05D006913 4.0e-20 103.6 374 27.5
Cre17.g726500 Chlamydomonas reinhardtii HOM05D005638 ORTHO05D006913 4.9e-18 96.7 130 42.3
Rhsim09G0101800 Rhododendron simsii HOM05D005638 ORTHO05D006913 1.6e-16 91.7 118 51.7
SEGI_29357 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 1.6e-16 91.7 109 45.9
FAN28G2655 Fragaria x ananassa HOM05D005638 ORTHO05D006913 7.8e-16 89.4 87 56.3
SHI16222 Sapria himalayana HOM05D000030 ORTHO05D007344 2.3e-15 87.8 56 80.4
Rhsim09G0101700 Rhododendron simsii HOM05D005638 ORTHO05D006913 1.8e-12 78.2 93 47.3


User provided reference genes

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