Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 1.4e-196 689.5 355 100.0
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 1.8e-180 636.0 359 91.9
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 1.1e-174 616.7 355 88.7
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 8.3e-154 547.4 355 82.3
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 8.3e-154 547.4 355 82.3
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 8.3e-154 547.4 355 82.3
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 1.4e-153 546.6 357 83.5
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.2e-153 545.4 355 82.5
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.4e-147 525.4 355 82.0
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.3e-146 523.5 355 81.7
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 2.7e-136 489.2 368 70.7
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 1.5e-134 483.4 363 71.9
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 2.5e-134 482.6 361 72.3
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 3.3e-134 482.3 364 72.3
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 4.3e-134 481.9 359 72.1
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 5.6e-134 481.5 367 72.8
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 9.6e-134 480.7 364 72.8
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 6.2e-133 478.0 363 71.9
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 5.3e-132 474.9 364 70.3
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 5.3e-132 474.9 334 74.9
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 6.9e-132 474.6 334 75.7
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 5.8e-131 471.5 368 70.9
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 5.8e-131 471.5 359 69.9
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 7.6e-131 471.1 362 72.7
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 1.7e-130 469.9 368 70.1
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 3.8e-130 468.8 337 73.9
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 3.8e-130 468.8 333 74.5
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 4.9e-130 468.4 338 73.4
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 1.1e-129 467.2 363 70.0
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 1.4e-129 466.8 363 68.6
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 1.4e-129 466.8 358 69.0
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 2.4e-129 466.1 316 77.8
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 5.4e-129 464.9 336 72.0
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 7.1e-129 464.5 363 70.0
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 1.2e-128 463.8 316 77.2
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 1.2e-128 463.8 360 71.4
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 1.2e-128 463.8 371 69.3
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 2.1e-128 463.0 369 69.6
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 2.1e-128 463.0 345 72.2
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 2.7e-128 462.6 302 78.1
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 3.5e-128 462.2 368 69.8
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 1.3e-127 460.3 358 70.9
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 1.3e-127 460.3 328 75.0
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 3.0e-127 459.1 344 71.8
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 3.0e-127 459.1 344 71.8
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 3.0e-127 459.1 358 70.7
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 3.0e-127 459.1 362 71.0
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 3.0e-127 459.1 368 67.7
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 8.7e-127 457.6 327 73.4
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 1.1e-126 457.2 364 67.3
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 1.5e-126 456.8 363 70.8
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 1.9e-126 456.4 309 77.0
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 2.5e-126 456.1 295 78.3
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 2.1e-125 453.0 366 69.7
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 6.2e-125 451.4 347 70.3
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 1.1e-124 450.7 304 76.0
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 2.4e-124 449.5 316 73.4
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 3.1e-124 449.1 360 69.2
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 4.0e-124 448.7 308 75.3
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 4.0e-124 448.7 361 68.7
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 5.3e-124 448.4 360 68.6
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 1.2e-123 447.2 275 82.5
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 1.5e-123 446.8 368 67.1
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 2.0e-123 446.4 284 80.3
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 2.0e-123 446.4 359 67.7
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 2.6e-123 446.0 276 82.6
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 4.5e-123 445.3 275 81.8
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 7.6e-123 444.5 367 67.8
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 7.6e-123 444.5 275 82.9
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 9.9e-123 444.1 276 81.9
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 9.9e-123 444.1 353 68.3
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 1.7e-122 443.4 276 82.2
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 1.7e-122 443.4 295 76.6
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 2.2e-122 443.0 310 74.5
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 2.9e-122 442.6 294 78.2
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 2.9e-122 442.6 362 66.9
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 2.9e-122 442.6 362 66.0
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 2.9e-122 442.6 295 77.6
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 3.8e-122 442.2 365 66.3
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 4.9e-122 441.8 275 82.2
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 1.1e-121 440.7 291 78.0
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 1.1e-121 440.7 366 66.9
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 1.4e-121 440.3 356 68.0
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 1.4e-121 440.3 275 81.8
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 1.4e-121 440.3 363 66.4
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 1.4e-121 440.3 363 65.8
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 1.4e-121 440.3 364 66.5
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 1.9e-121 439.9 275 81.8
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 2.5e-121 439.5 320 71.9
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 2.5e-121 439.5 310 73.9
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 3.2e-121 439.1 336 67.9
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 3.2e-121 439.1 364 66.8
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 4.2e-121 438.7 294 76.9
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 4.2e-121 438.7 355 68.5
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 5.5e-121 438.3 295 76.6
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 5.5e-121 438.3 417 60.2
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 5.5e-121 438.3 417 60.2
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 5.5e-121 438.3 362 66.0
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 7.1e-121 438.0 300 76.3
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 7.1e-121 438.0 361 66.2
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 1.6e-120 436.8 303 74.3
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 2.7e-120 436.0 296 74.7
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 4.6e-120 435.3 362 66.6
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 4.6e-120 435.3 362 66.6
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 6.0e-120 434.9 294 75.2
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 6.0e-120 434.9 363 68.3
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 6.0e-120 434.9 301 73.4
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 1.0e-119 434.1 288 78.5
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 1.0e-119 434.1 326 72.4
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 2.3e-119 433.0 362 64.4
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 3.9e-119 432.2 314 72.6
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 8.7e-119 431.0 269 79.6
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 7.4e-118 427.9 325 68.9
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 7.4e-118 427.9 338 69.8
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 1.1e-116 424.1 238 89.5
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 4.0e-116 422.2 256 82.0
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 5.3e-116 421.8 351 63.8
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.2e-115 420.6 278 77.7
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 2.2e-114 416.4 359 63.5
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 1.1e-110 404.1 282 74.1
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 9.7e-110 401.0 305 70.2
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 9.7e-110 401.0 300 71.3
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 2.2e-109 399.8 387 58.9
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 8.2e-109 397.9 320 65.3
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 8.2e-109 397.9 339 64.3
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 2.4e-108 396.4 349 62.2
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 4.1e-108 395.6 360 64.4
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 9.0e-108 394.4 272 75.0
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 1.5e-107 393.7 334 62.6
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 2.0e-107 393.3 295 68.1
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 1.7e-106 390.2 249 77.5
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 8.5e-106 387.9 225 85.8
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 1.9e-105 386.7 297 67.0
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 7.2e-105 384.8 264 74.2
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 1.4e-100 370.5 243 75.7
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 4.2e-97 359.0 257 67.3
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 5.3e-92 342.0 242 71.1
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 3.8e-90 335.9 299 61.5
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 6.5e-90 335.1 302 61.6
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 1.0e-87 327.8 250 65.2
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 6.3e-85 318.5 335 57.6
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 9.8e-62 241.5 196 65.3
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 1.7e-58 230.7 154 75.3
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 3.9e-58 229.6 158 73.4
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 1.6e-56 224.2 189 61.9
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 1.4e-55 221.1 163 65.6
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 1.2e-48 198.0 108 96.3
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 4.1e-36 156.4 102 77.5
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 7.1e-36 155.6 99 78.8
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.7e-34 151.0 116 68.1
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 3.1e-31 140.2 131 57.3
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 1.3e-24 118.2 102 63.7
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 3.2e-20 103.6 64 85.9
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 4.2e-20 103.2 61 85.2


User provided reference genes

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