Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 9.7e-164 580.1 296 100.0
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 4.8e-155 551.2 296 95.6
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 3.5e-145 518.5 299 90.3
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 9.8e-132 473.8 298 82.9
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 2.3e-125 452.6 293 81.6
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.3e-125 452.6 293 81.6
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 8.9e-125 450.7 293 81.2
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.5e-124 449.9 291 81.1
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 6.4e-123 444.5 276 84.4
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.2e-121 440.3 313 76.4
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 1.7e-120 436.4 285 80.0
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 8.6e-120 434.1 297 76.8
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 4.3e-119 431.8 298 74.8
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 7.3e-119 431.0 299 75.6
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 7.3e-119 431.0 286 78.3
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 7.3e-119 431.0 285 76.5
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 2.8e-118 429.1 298 75.5
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 8.0e-118 427.6 286 76.9
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 1.0e-117 427.2 297 73.7
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 1.4e-117 426.8 302 73.5
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 8.9e-117 424.1 287 77.4
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.2e-116 423.7 286 76.2
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 1.2e-116 423.7 286 76.2
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 1.5e-116 423.3 276 79.0
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 2.6e-116 422.5 298 74.5
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 5.8e-116 421.4 281 76.2
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 7.5e-116 421.0 296 74.3
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 9.8e-116 420.6 300 72.0
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 2.2e-115 419.5 328 68.9
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 7.0e-114 414.5 297 72.7
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 7.0e-114 414.5 293 73.0
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 1.2e-113 413.7 299 71.2
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 6.0e-113 411.4 300 72.3
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 7.8e-113 411.0 305 72.8
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 1.7e-112 409.8 305 71.8
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 1.7e-112 409.8 291 71.1
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 2.3e-112 409.5 283 75.3
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 5.0e-112 408.3 300 71.3
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 6.6e-112 407.9 260 79.6
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 6.6e-112 407.9 297 74.4
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 8.6e-112 407.5 300 70.0
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 1.9e-111 406.4 281 74.0
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 1.9e-111 406.4 275 76.4
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 2.5e-111 406.0 305 68.9
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 3.3e-111 405.6 300 70.3
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 5.6e-111 404.8 292 71.2
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 9.5e-111 404.1 302 68.5
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 1.2e-110 403.7 300 68.7
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 1.2e-110 403.7 292 70.9
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 1.6e-110 403.3 298 70.8
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 2.8e-110 402.5 303 68.6
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 2.8e-110 402.5 303 68.6
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 2.8e-110 402.5 287 71.8
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 4.7e-110 401.7 307 67.8
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 4.7e-110 401.7 307 67.8
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 2.3e-109 399.4 305 68.5
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 3.1e-109 399.1 289 71.6
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 5.2e-109 398.3 327 65.7
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 1.5e-108 396.7 293 71.0
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 2.0e-108 396.4 274 74.1
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 3.4e-108 395.6 289 69.2
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 3.4e-108 395.6 300 70.0
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 4.4e-108 395.2 274 73.7
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.8e-108 394.8 257 77.0
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 7.5e-108 394.4 286 68.9
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 1.3e-107 393.7 277 73.6
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 1.1e-106 390.6 278 72.7
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 1.4e-106 390.2 288 69.1
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 1.9e-106 389.8 286 71.7
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 2.4e-106 389.4 296 69.3
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 3.2e-106 389.0 290 67.6
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.1e-106 388.7 257 74.3
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 4.1e-106 388.7 261 74.7
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 1.2e-105 387.1 285 69.8
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 1.6e-105 386.7 278 70.1
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 1.6e-105 386.7 278 70.1
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 2.1e-105 386.3 286 71.0
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 2.7e-105 386.0 276 72.8
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 6.0e-105 384.8 270 73.7
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 6.0e-105 384.8 270 73.7
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 3.9e-104 382.1 275 69.1
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 3.9e-104 382.1 296 68.6
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 8.6e-104 380.9 259 74.5
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 4.3e-103 378.6 270 69.6
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 5.6e-103 378.3 272 69.1
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 7.3e-103 377.9 307 66.1
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 1.6e-102 376.7 289 67.5
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 3.6e-102 375.6 273 72.2
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 4.7e-102 375.2 290 67.6
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 6.2e-102 374.8 248 74.2
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 1.8e-101 373.2 314 64.6
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 6.8e-101 371.3 275 69.1
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 2.6e-100 369.4 274 70.1
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 3.4e-100 369.0 287 69.7
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 3.4e-100 369.0 306 65.7
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 1.3e-99 367.1 270 68.5
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 1.7e-99 366.7 307 64.5
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 2.4e-98 362.8 286 66.1
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 3.2e-98 362.5 298 67.8
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 7.1e-98 361.3 297 65.0
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 3.5e-97 359.0 235 72.8
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 2.3e-96 356.3 290 64.8
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 2.3e-96 356.3 252 72.6
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 7.3e-95 351.3 271 64.9
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 1.6e-94 350.1 244 70.9
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 2.1e-94 349.7 271 64.6
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 2.8e-94 349.4 269 67.3
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 6.2e-94 348.2 289 64.7
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 1.4e-93 347.1 302 62.3
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 1.8e-93 346.7 298 64.4
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 3.8e-91 339.0 290 62.8
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 1.7e-88 330.1 256 66.8
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 3.0e-88 329.3 254 67.3
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 5.8e-84 315.1 254 62.2
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 1.3e-83 313.9 252 65.1
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 3.2e-82 309.3 263 61.2
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 3.9e-80 302.4 262 60.7
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 2.1e-78 296.6 280 56.8
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 2.1e-78 296.6 257 59.5
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 4.0e-77 292.4 261 57.5
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 7.6e-76 288.1 206 73.3
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 1.3e-75 287.3 257 55.6
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 2.4e-74 283.1 296 53.7
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 2.4e-74 283.1 176 80.1
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.3e-72 277.3 298 49.7
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 6.7e-72 275.0 257 55.3
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 1.4e-69 267.3 284 52.8
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.5e-66 256.5 189 69.3
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 3.4e-60 236.1 142 81.0
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 9.3e-58 228.0 215 55.3
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 6.1e-57 225.3 244 51.6
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 1.3e-56 224.2 142 77.5
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 3.9e-56 222.6 142 75.4
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.1e-49 198.7 182 59.3
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 1.8e-48 197.2 164 62.8
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 9.7e-47 191.4 145 70.3
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 2.2e-46 190.3 114 83.3
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.4e-45 187.6 288 39.9
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 7.7e-44 181.8 127 71.7
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.1e-41 173.7 208 48.6
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 2.6e-39 166.8 241 43.2
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 2.9e-35 153.3 239 40.2
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 4.7e-33 146.0 268 37.7
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 7.5e-31 138.7 129 57.4
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 7.5e-31 138.7 84 77.4
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 2.7e-28 130.2 84 75.0
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 1.1e-26 124.8 86 72.1
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 1.9e-26 124.0 148 50.7
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 1.4e-21 107.8 184 36.4
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 9.1e-21 105.1 72 69.4
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 9.1e-21 105.1 62 80.6
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 2.0e-20 104.0 185 40.5
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 7.2e-18 95.5 57 73.7
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 2.8e-17 93.6 124 46.8
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 3.4e-15 86.7 182 31.9
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 2.8e-14 83.6 50 80.0
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 1.4e-13 81.3 290 23.1
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 2.7e-12 77.0 142 29.6
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 3.5e-12 76.6 154 29.9
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 2.3e-11 73.9 270 24.1
PRCOL_00001993 Prasinoderma coloniale HOM05D004215 ORTHO05D005293 4.7e-09 66.2 156 28.8
SEGI_37569 Sequoiadendron giganteum HOM05D004215 ORTHO05D018306 5.2e-08 62.8 249 24.5
Aa31LG7G4470 Aethionema arabicum HOM05D000565 ORTHO05D004389 1.7e-06 57.8 165 27.9
Thhalv10007988m.g Eutrema salsugineum HOM05D000565 ORTHO05D004389 1.7e-06 57.8 167 26.9
C08p45130 Brassica napus HOM05D004215 ORTHO05D005293 2.2e-06 57.4 57 64.9
BolC8t52061H Brassica oleracea HOM05D004215 ORTHO05D005293 2.2e-06 57.4 57 64.9
CARHR020500 Cardamine hirsuta HOM05D000565 ORTHO05D004389 2.9e-06 57.0 165 27.3
COL.COLO4_26135 Corchorus olitorius HOM05D000565 ORTHO05D004389 2.9e-06 57.0 172 27.3
PRCOL_00003073 Prasinoderma coloniale HOM05D004215 ORTHO05D018306 2.9e-06 57.0 134 32.8
Hma1.2p1_0315F.1_g122190 Hydrangea macrophylla HOM05D000565 ORTHO05D004389 4.9e-06 56.2 165 26.7
Hma1.2p1_0956F.1_g241235 Hydrangea macrophylla HOM05D000565 ORTHO05D004389 4.9e-06 56.2 165 26.7
Lj2A470G26 Lonicera japonica HOM05D000565 ORTHO05D004389 6.4e-06 55.8 165 26.7
THA.LOC104811414 Tarenaya hassleriana HOM05D000565 ORTHO05D004389 6.4e-06 55.8 164 26.2
A07p16060 Brassica napus HOM05D000565 ORTHO05D004389 8.3e-06 55.5 165 27.3
Carub.0001s1955 Capsella rubella HOM05D000565 ORTHO05D004389 8.3e-06 55.5 165 27.3
GSVIVG01009925001 Vitis vinifera HOM05D000565 ORTHO05D004389 8.3e-06 55.5 165 27.3


User provided reference genes

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