Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1032600 Malus domestica HOM05D005954 ORTHO05D007347 2.8e-64 248.4 125 100.0
MD10G1282300 Malus domestica HOM05D005954 ORTHO05D007347 2.8e-27 125.6 125 63.2
MD05G1303200 Malus domestica HOM05D005954 ORTHO05D007347 3.7e-24 115.2 126 61.9
MD16G1032000 Malus domestica HOM05D005954 ORTHO05D007347 2.7e-22 109.0 125 59.2
MELO3C007218.2 Cucumis melo HOM05D005954 ORTHO05D007347 5.0e-21 104.8 125 56.0
MD10G1067400 Malus domestica HOM05D005954 ORTHO05D007347 5.0e-21 104.8 123 59.3
CsaV3_6G050830 Cucumis sativus L. HOM05D005954 ORTHO05D007347 6.6e-21 104.4 118 59.3
Prupe.4G059500 Prunus persica HOM05D005954 ORTHO05D007347 1.5e-20 103.2 119 53.8
RcHm_v2.0_Chr5g0010351 Rosa chinensis HOM05D005954 ORTHO05D007347 1.5e-20 103.2 121 56.2
FAN21G0082 Fragaria x ananassa HOM05D005954 ORTHO05D007347 5.6e-20 101.3 121 55.4
FvH4_3g07980 Fragaria vesca HOM05D005954 ORTHO05D007347 1.2e-19 100.1 121 54.5
FAN16G0914 Fragaria x ananassa HOM05D005954 ORTHO05D007347 1.2e-19 100.1 121 54.5
ClCG01G023670 Citrullus lanatus HOM05D005954 ORTHO05D007347 1.6e-19 99.8 125 53.6
Sed0006910 Sechium edule HOM05D005954 ORTHO05D007347 1.6e-19 99.8 125 53.6
FAN11G0799 Fragaria x ananassa HOM05D005954 ORTHO05D007347 3.6e-19 98.6 121 55.4
Eucgr.D00519 Eucalyptus grandis HOM05D005954 ORTHO05D007347 6.2e-19 97.8 120 55.0
CANSAT11G0094 Cannabis sativa HOM05D005954 ORTHO05D007347 4.0e-18 95.1 125 52.8
Gohir.A06G134004 Gossypium hirsutum HOM05D005954 ORTHO05D007347 4.0e-18 95.1 124 53.2
arahy.Tifrunner.gnm1.ann1.N07IEU Arachis hypogaea HOM05D005954 ORTHO05D007347 5.2e-18 94.7 111 55.9
Duzib160G0806 Durio zibethinus HOM05D005954 ORTHO05D007347 5.2e-18 94.7 129 53.5
Gohir.D06G136500 Gossypium hirsutum HOM05D005954 ORTHO05D007347 5.2e-18 94.7 125 52.8
Gorai.010G158700 Gossypium raimondii HOM05D005954 ORTHO05D007347 5.2e-18 94.7 125 52.8
QL05p046336 Quercus lobata HOM05D005954 ORTHO05D007347 8.9e-18 94.0 120 50.8
Gohir.D05G158700 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.2e-17 93.6 129 53.5
Potri.011G064800 Populus trichocarpa HOM05D005954 ORTHO05D007347 1.5e-17 93.2 127 48.8
arahy.Tifrunner.gnm1.ann1.YBYE48 Arachis hypogaea HOM05D005954 ORTHO05D007347 2.0e-17 92.8 111 54.1
Gohir.A05G156000 Gossypium hirsutum HOM05D005954 ORTHO05D007347 2.0e-17 92.8 129 52.7
Gorai.009G163700 Gossypium raimondii HOM05D005954 ORTHO05D007347 2.0e-17 92.8 129 52.7
Thecc.06G173000 Theobroma cacao HOM05D005954 ORTHO05D007347 2.6e-17 92.4 119 53.8
GSVIVG01021193001 Vitis vinifera HOM05D005954 ORTHO05D007347 2.6e-17 92.4 113 54.0
TAR626G1287 Trochodendron aralioides HOM05D005954 ORTHO05D007347 4.4e-17 91.7 120 51.7
Manes.17G054200 Manihot esculenta HOM05D005954 ORTHO05D007347 5.8e-17 91.3 123 50.4
Lj6g0020578 Lotus japonicus HOM05D005954 ORTHO05D007347 9.8e-17 90.5 113 54.9
Nn1g09054 Nelumbo nucifera HOM05D005954 ORTHO05D007347 1.7e-16 89.7 115 50.4
PSO541G3988 Papaver somniferum HOM05D005954 ORTHO05D007347 1.7e-16 89.7 115 50.4
PSO675G5672 Papaver somniferum HOM05D005954 ORTHO05D007347 1.7e-16 89.7 115 50.4
Cpa.g.sc7.59 Carica papaya HOM05D005954 ORTHO05D007347 2.2e-16 89.4 123 52.8
CDE05G1458 Ceratophyllum demersum HOM05D005954 ORTHO05D007347 2.2e-16 89.4 115 53.0
Ciclev10017015m.g Citrus clementina HOM05D005954 ORTHO05D007347 2.9e-16 89.0 115 56.5
Thhalv10008967m.g Eutrema salsugineum HOM05D005954 ORTHO05D007347 3.7e-16 88.6 125 51.2
Manes.16G037400 Manihot esculenta HOM05D005954 ORTHO05D007347 4.9e-16 88.2 123 48.8
CiPaw.09G068600 Carya illinoinensis HOM05D005954 ORTHO05D007347 6.4e-16 87.8 128 50.0
CDE02G3841 Ceratophyllum demersum HOM05D005954 ORTHO05D009675 6.4e-16 87.8 115 52.2
PGR004G0539 Punica granatum HOM05D005954 ORTHO05D007347 6.4e-16 87.8 127 51.2
PGR004G0737 Punica granatum HOM05D005954 ORTHO05D007347 6.4e-16 87.8 127 51.2
TWI38G2142 Tripterygium wilfordii HOM05D005954 ORTHO05D007347 8.3e-16 87.4 112 56.2
EL10Ac8g20509 Beta vulgaris HOM05D005954 ORTHO05D007347 1.4e-15 86.7 118 51.7
Haze_06257 Corylus avellana HOM05D005954 ORTHO05D007347 1.4e-15 86.7 132 51.5
ECA236G0551 Erigeron canadensis HOM05D005954 ORTHO05D007347 1.4e-15 86.7 122 51.6
Phvul.006G176900 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 1.4e-15 86.7 120 48.3
Phvul.006G176980 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 1.4e-15 86.7 120 48.3
Atru.chr10.1690 Acer truncatum HOM05D005954 ORTHO05D007347 2.4e-15 85.9 111 53.2
Aqoxy1G03187 Aquilegia oxysepala HOM05D005954 ORTHO05D007347 2.4e-15 85.9 111 51.4
COL.COLO4_31320 Corchorus olitorius HOM05D005954 ORTHO05D007347 2.4e-15 85.9 52 84.6
A08p25330 Brassica napus HOM05D005954 ORTHO05D007347 3.2e-15 85.5 124 51.6
C07p16610 Brassica napus HOM05D005954 ORTHO05D007347 3.2e-15 85.5 121 51.2
BraA08t34485Z Brassica rapa HOM05D005954 ORTHO05D007347 3.2e-15 85.5 124 51.6
MSTRG.14726 Avicennia marina HOM05D005954 ORTHO05D007347 4.1e-15 85.1 118 51.7
HanXRQChr04g0116001 Helianthus annuus HOM05D005954 ORTHO05D007347 4.1e-15 85.1 121 51.2
Sabra11G0046600 Salix brachista HOM05D005954 ORTHO05D007347 4.1e-15 85.1 155 41.3
BcaNung06433 Brassica carinata HOM05D005954 ORTHO05D007347 5.4e-15 84.7 124 51.6
Cc02_g14660 Coffea canephora HOM05D005954 ORTHO05D007347 5.4e-15 84.7 118 52.5
Lsat_1_v5_gn_7_23061 Lactuca sativa HOM05D005954 ORTHO05D007347 5.4e-15 84.7 140 47.9
C03p75510 Brassica napus HOM05D005954 ORTHO05D007347 7.0e-15 84.3 125 51.2
TPR.G11659 Trifolium pratense HOM05D005954 ORTHO05D007347 7.0e-15 84.3 115 53.0
HPP92_016045 Vanilla planifolia HOM05D005954 ORTHO05D007347 7.0e-15 84.3 53 81.1
Glyma.13G230600 Glycine max HOM05D005954 ORTHO05D007347 9.2e-15 84.0 116 48.3
THA.LOC104820590 Tarenaya hassleriana HOM05D005954 ORTHO05D007347 9.2e-15 84.0 125 51.2
Ah.09g233660 Amaranthus hybridus HOM05D005954 ORTHO05D007347 1.6e-14 83.2 111 55.0
BolC3t19807H Brassica oleracea HOM05D005954 ORTHO05D007347 1.6e-14 83.2 125 51.2
Cfa000593 Carpinus fangiana HOM05D005954 ORTHO05D007347 1.6e-14 83.2 127 49.6
BcaB07g32486 Brassica carinata HOM05D005954 ORTHO05D007347 2.7e-14 82.4 124 49.2
A09p37340 Brassica napus HOM05D005954 ORTHO05D007347 2.7e-14 82.4 124 50.0
BraA09t39243Z Brassica rapa HOM05D005954 ORTHO05D007347 2.7e-14 82.4 124 50.0
CARHR028290 Cardamine hirsuta HOM05D005954 ORTHO05D007347 2.7e-14 82.4 119 52.1
Glyma.15G082000 Glycine max HOM05D005954 ORTHO05D007347 2.7e-14 82.4 116 47.4
Migut.H01450 Erythranthe guttata HOM05D005954 ORTHO05D007347 3.5e-14 82.0 121 47.9
Peaxi162Scf00061g00155 Petunia axillaris HOM05D005954 ORTHO05D007347 3.5e-14 82.0 127 48.8
Sp1g25010 Schrenkiella parvula HOM05D005954 ORTHO05D007347 3.5e-14 82.0 122 50.0
Aa31LG5G21180 Aethionema arabicum HOM05D005954 ORTHO05D007347 4.6e-14 81.6 123 52.0
AT1G29070 Arabidopsis thaliana HOM05D005954 ORTHO05D007347 6.0e-14 81.3 119 49.6
BcaNung06755 Brassica carinata HOM05D005954 ORTHO05D007347 6.0e-14 81.3 115 52.2
AUR62036591 Chenopodium quinoa HOM05D005954 ORTHO05D007347 6.0e-14 81.3 118 49.2
Solyc01g056780.3 Solanum lycopersicum HOM05D005954 ORTHO05D007347 6.0e-14 81.3 128 43.8
ATR0602G014 Amborella trichopoda HOM05D005954 ORTHO05D007347 7.8e-14 80.9 120 47.5
CSS0014251 Camellia sinensis var. sinensis HOM05D005954 ORTHO05D007347 7.8e-14 80.9 128 48.4
Carub.0001s2727 Capsella rubella HOM05D005954 ORTHO05D007347 7.8e-14 80.9 119 49.6
Dinv04624 Davidia involucrata HOM05D005954 ORTHO05D007347 1.0e-13 80.5 125 48.0
Lj1P1194T69 Lonicera japonica HOM05D005954 ORTHO05D007347 1.0e-13 80.5 54 75.9
Medtr2g015790 Medicago truncatula HOM05D005954 ORTHO05D007347 1.3e-13 80.1 112 50.0
MBI13_g00561_MAGBIO Magnolia biondii HOM05D005954 ORTHO05D007347 1.7e-13 79.7 54 74.1
AL1G42790 Arabidopsis lyrata HOM05D005954 ORTHO05D007347 2.3e-13 79.3 119 49.6
BcaC05g26922 Brassica carinata HOM05D005954 ORTHO05D007347 3.0e-13 79.0 124 49.2
C05p27750 Brassica napus HOM05D005954 ORTHO05D007347 3.0e-13 79.0 124 49.2
BolC5t31496H Brassica oleracea HOM05D005954 ORTHO05D007347 3.0e-13 79.0 124 49.2
CARHR028330 Cardamine hirsuta HOM05D005954 ORTHO05D007347 3.0e-13 79.0 63 68.3
MD16G1032400 Malus domestica HOM05D005954 ORTHO05D007347 3.0e-13 79.0 54 79.6
AUR62031174 Chenopodium quinoa HOM05D005954 ORTHO05D007347 3.9e-13 78.6 118 49.2
SalBow8G3893 Salvia bowleyana HOM05D005954 ORTHO05D007347 3.9e-13 78.6 116 50.0
Hund23979 Selenicereus undatus HOM05D005954 ORTHO05D007347 6.6e-13 77.8 127 49.6
SGA_v2.0_scaffold1G00032 Striga asiatica HOM05D005954 ORTHO05D007347 6.6e-13 77.8 127 45.7
Sopen01g025250 Solanum pennellii HOM05D005954 ORTHO05D007347 8.6e-13 77.4 129 44.2
PGSC0003DMG400021493 Solanum tuberosum HOM05D005954 ORTHO05D007347 8.6e-13 77.4 128 42.2
Nitab4.5_0000117g0150 Nicotiana tabacum HOM05D005954 ORTHO05D007347 1.9e-12 76.3 122 46.7
Nitab4.5_0004274g0040 Nicotiana tabacum HOM05D005954 ORTHO05D007347 3.3e-12 75.5 122 46.7
vmacro01548 Vaccinium macrocarpon HOM05D005954 ORTHO05D007347 3.3e-12 75.5 128 43.8
Oeu001090.1 Olea europaea HOM05D005954 ORTHO05D007347 7.3e-12 74.3 115 48.7
CAN.G889.12 Capsicum annuum HOM05D005954 ORTHO05D007347 9.5e-12 73.9 113 44.2
Lalb_Chr20g0121221 Lupinus albus HOM05D005954 ORTHO05D007347 1.2e-11 73.6 50 74.0
Psat1g199440 Pisum sativum HOM05D005954 ORTHO05D007347 1.2e-11 73.6 114 47.4
Sc05g0007180 Simmondsia chinensis HOM05D005954 ORTHO05D007347 1.2e-11 73.6 52 75.0
Atru.chr10.1684 Acer truncatum HOM05D005954 ORTHO05D007347 2.1e-11 72.8 51 74.5
Zm00001eb150530 Zea mays HOM05D005954 ORTHO05D007347 2.1e-11 72.8 135 39.3
Os01g0805000 Oryza sativa ssp. japonica HOM05D005954 ORTHO05D007347 3.6e-11 72.0 136 41.2
arahy.Tifrunner.gnm1.ann1.69550A Arachis hypogaea HOM05D005954 ORTHO05D007347 4.7e-11 71.6 100 50.0
Ca_00467_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 1.1e-10 70.5 51 70.6
Ca_30955_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 1.1e-10 70.5 51 70.6
unitig_22.g6753 Utricularia gibba HOM05D005954 ORTHO05D007347 1.8e-10 69.7 53 71.7
Rhsim13G0191500 Rhododendron simsii HOM05D005954 ORTHO05D007347 1.5e-09 66.6 128 41.4
DCAR_007962 Daucus carota HOM05D005954 ORTHO05D007347 5.8e-09 64.7 119 44.5
BcaC06g35397 Brassica carinata HOM05D005954 ORTHO05D007347 1.1e-07 60.5 115 47.0
CBR_g29683 Chara braunii HOM05D005954 ORTHO05D007347 7.1e-07 57.8 53 60.4
Pp3c21_6450 Physcomitrium patens HOM05D005954 ORTHO05D007347 1.2e-06 57.0 57 57.9
Mapoly0043s0046 Marchantia polymorpha HOM05D005954 ORTHO05D007347 6.0e-06 54.7 112 43.8


User provided reference genes

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