Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1031500 Malus domestica HOM05D005467 ORTHO05D006523 2.4e-240 835.1 419 100.0
RcHm_v2.0_Chr4g0433781 Rosa chinensis HOM05D005467 ORTHO05D006523 1.8e-208 729.2 419 85.7
FvH4_4g26200 Fragaria vesca HOM05D005467 ORTHO05D006523 9.4e-205 716.8 420 84.5
FAN07G0694 Fragaria x ananassa HOM05D005467 ORTHO05D006523 7.9e-204 713.8 420 84.8
Cfa008565 Carpinus fangiana HOM05D005467 ORTHO05D006523 2.6e-194 682.2 417 79.9
Hma1.2p1_0114F.1_g055340 Hydrangea macrophylla HOM05D005467 ORTHO05D006523 5.9e-191 671.0 424 77.8
CiPaw.05G246600 Carya illinoinensis HOM05D005467 ORTHO05D006523 7.7e-191 670.6 417 78.9
Prupe.1G321400 Prunus persica HOM05D005467 ORTHO05D006523 1.3e-190 669.8 375 88.5
Potri.010G116200 Populus trichocarpa HOM05D005467 ORTHO05D006523 2.9e-190 668.7 412 79.1
Gorai.012G123600 Gossypium raimondii HOM05D005467 ORTHO05D006523 1.9e-189 666.0 416 77.4
GSVIVG01011792001 Vitis vinifera HOM05D005467 ORTHO05D006523 4.2e-189 664.8 412 78.6
FAN12G1869 Fragaria x ananassa HOM05D005467 ORTHO05D006523 5.5e-189 664.5 420 80.7
FAN12G3855 Fragaria x ananassa HOM05D005467 ORTHO05D006523 7.2e-189 664.1 420 80.5
QL01p002615 Quercus lobata HOM05D005467 ORTHO05D006523 1.2e-188 663.3 493 68.6
Ciclev10015390m.g Citrus clementina HOM05D005467 ORTHO05D006523 6.1e-188 661.0 414 76.3
Gohir.A04G099200 Gossypium hirsutum HOM05D005467 ORTHO05D006523 1.4e-187 659.8 416 77.4
Thecc.02G211500 Theobroma cacao HOM05D005467 ORTHO05D006523 1.8e-187 659.4 415 76.1
CSS0047900 Camellia sinensis var. sinensis HOM05D005467 ORTHO05D006523 1.5e-186 656.4 411 77.6
TAR629G1677 Trochodendron aralioides HOM05D005467 ORTHO05D006523 2.0e-186 656.0 417 76.7
Glyma.10G266400 Glycine max HOM05D005467 ORTHO05D006523 3.4e-186 655.2 413 76.3
arahy.Tifrunner.gnm1.ann1.U1J3BU Arachis hypogaea HOM05D005467 ORTHO05D006523 5.7e-186 654.4 411 77.9
Actinidia14942 Actinidia chinensis HOM05D005467 ORTHO05D006523 3.7e-185 651.7 410 77.8
Manes.06G062500 Manihot esculenta HOM05D005467 ORTHO05D006523 4.8e-185 651.4 417 77.0
PGR119G0286 Punica granatum HOM05D005467 ORTHO05D006523 6.3e-185 651.0 420 76.0
TWI31G0476 Tripterygium wilfordii HOM05D005467 ORTHO05D006523 6.3e-185 651.0 416 75.2
Phvul.007G035400 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 1.1e-184 650.2 417 76.0
Sed0008724 Sechium edule HOM05D005467 ORTHO05D006523 3.1e-184 648.7 411 76.2
CsaV3_5G034840 Cucumis sativus L. HOM05D005467 ORTHO05D006523 5.4e-184 647.9 419 75.4
Nn3g18021 Nelumbo nucifera HOM05D005467 ORTHO05D006523 5.4e-184 647.9 417 74.8
VMungo0720G1946 Vigna mungo HOM05D005467 ORTHO05D006523 2.0e-183 646.0 417 74.8
arahy.Tifrunner.gnm1.ann1.F0PHAM Arachis hypogaea HOM05D005467 ORTHO05D006523 1.0e-182 643.7 432 74.5
Glyma.20G124100 Glycine max HOM05D005467 ORTHO05D006523 1.3e-182 643.3 417 75.3
Lj5g0001822 Lotus japonicus HOM05D005467 ORTHO05D006523 5.0e-182 641.3 413 74.8
Lalb_Chr21g0308561 Lupinus albus HOM05D005467 ORTHO05D006523 7.2e-181 637.5 411 75.7
TPR.G4835 Trifolium pratense HOM05D005467 ORTHO05D006523 1.6e-180 636.3 418 73.9
Sabra10G0087600 Salix brachista HOM05D005467 ORTHO05D006523 2.1e-180 636.0 439 72.7
Sabra10G0086000 Salix brachista HOM05D005467 ORTHO05D006523 2.3e-179 632.5 443 71.8
Migut.L00653 Erythranthe guttata HOM05D005467 ORTHO05D006523 6.8e-179 630.9 419 72.6
Migut.L00826 Erythranthe guttata HOM05D005467 ORTHO05D006523 1.5e-178 629.8 419 72.6
Eucgr.G02222 Eucalyptus grandis HOM05D005467 ORTHO05D006523 3.4e-178 628.6 419 73.7
CANSAT01G3134 Cannabis sativa HOM05D005467 ORTHO05D006523 2.4e-176 622.5 420 73.3
PSO063G5439 Papaver somniferum HOM05D005467 ORTHO05D006523 1.6e-175 619.8 412 71.8
Aqoxy3G00153 Aquilegia oxysepala HOM05D005467 ORTHO05D006523 7.8e-175 617.5 413 72.6
PSO782G0553 Papaver somniferum HOM05D005467 ORTHO05D006523 7.8e-175 617.5 416 71.6
Lj6C750G3 Lonicera japonica HOM05D005467 ORTHO05D006523 1.0e-174 617.1 411 74.5
Rhsim09G0101300 Rhododendron simsii HOM05D005467 ORTHO05D006523 1.7e-174 616.3 458 69.2
Medtr1g108650 Medicago truncatula HOM05D005467 ORTHO05D006523 8.6e-174 614.0 418 71.3
ECA246G2902 Erigeron canadensis HOM05D005467 ORTHO05D006523 1.9e-173 612.8 415 71.3
ClCG05G022280 Citrullus lanatus HOM05D005467 ORTHO05D006523 1.6e-172 609.8 494 64.6
HanXRQChr15g0477671 Helianthus annuus HOM05D005467 ORTHO05D006523 6.1e-172 607.8 411 71.0
Psat6g222960 Pisum sativum HOM05D005467 ORTHO05D006523 5.2e-171 604.7 413 71.7
Peaxi162Scf00205g00928 Petunia axillaris HOM05D005467 ORTHO05D006523 1.5e-170 603.2 410 70.2
DCAR_007277 Daucus carota HOM05D005467 ORTHO05D006523 9.2e-168 594.0 420 68.1
CAN.G1489.4 Capsicum annuum HOM05D005467 ORTHO05D006523 5.9e-167 591.3 410 70.5
MBI10_g46301_MAGBIO Magnolia biondii HOM05D005467 ORTHO05D006523 3.9e-166 588.6 362 77.3
Atru.chr11.358 Acer truncatum HOM05D005467 ORTHO05D006523 1.5e-165 586.6 380 76.1
AUR62014129 Chenopodium quinoa HOM05D005467 ORTHO05D006523 1.5e-165 586.6 433 66.7
Sopen05g004250 Solanum pennellii HOM05D005467 ORTHO05D006523 1.2e-164 583.6 410 69.3
Duzib248G1088 Durio zibethinus HOM05D005467 ORTHO05D006523 6.2e-164 581.3 414 71.0
Ca_11108_v3 Cicer arietinum L. HOM05D005467 ORTHO05D006523 3.1e-163 578.9 413 69.2
Nitab4.5_0000350g0200 Nicotiana tabacum HOM05D005467 ORTHO05D006523 8.9e-163 577.4 410 68.0
Ah.02g128100 Amaranthus hybridus HOM05D005467 ORTHO05D006523 2.2e-161 572.8 427 65.8
Os01g0506200 Oryza sativa ssp. japonica HOM05D005467 ORTHO05D006523 2.0e-159 566.2 409 67.2
Solyc05g008420.4 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.8e-155 553.1 395 68.6
MELO3C012295.2 Cucumis melo HOM05D005467 ORTHO05D006523 1.2e-154 550.4 355 76.1
Cpa.g.sc65.104 Carica papaya HOM05D005467 ORTHO05D006523 7.5e-154 547.7 419 66.8
Hund24998 Selenicereus undatus HOM05D005467 ORTHO05D006523 2.4e-152 542.7 411 66.2
Dinv05879 Davidia involucrata HOM05D005467 ORTHO05D006523 7.8e-151 537.7 327 80.1
Gohir.D04G138632 Gossypium hirsutum HOM05D005467 ORTHO05D006523 5.1e-150 535.0 350 74.6
MSTRG.879 Avicennia marina HOM05D005467 ORTHO05D006523 2.5e-149 532.7 349 72.8
SGA_v2.0_scaffold50G18532 Striga asiatica HOM05D005467 ORTHO05D006523 3.6e-148 528.9 450 60.7
TAR622G1271 Trochodendron aralioides HOM05D005467 ORTHO05D006523 6.2e-148 528.1 342 74.6
AUR62039552 Chenopodium quinoa HOM05D005467 ORTHO05D006523 5.1e-142 508.4 429 60.1
vmacro10622 Vaccinium macrocarpon HOM05D005467 ORTHO05D006523 8.6e-142 507.7 466 59.9
Gohir.D04G138566 Gossypium hirsutum HOM05D005467 ORTHO05D006523 4.0e-123 445.7 279 77.1
SMO172G0164 Selaginella moellendorffii HOM05D005467 ORTHO05D006523 4.0e-123 445.7 404 55.7
unitig_21.g20024 Utricularia gibba HOM05D000903 ORTHO05D000731 7.1e-120 434.9 399 55.6
Nitab4.5_0004524g0030 Nicotiana tabacum HOM05D005467 ORTHO05D006523 9.3e-120 434.5 298 70.1
Sc04g0005780 Simmondsia chinensis HOM05D005467 ORTHO05D006523 1.6e-116 423.7 268 76.9
Cc11_g09130 Coffea canephora HOM05D005467 ORTHO05D006523 2.9e-113 412.9 277 71.5
Lsat_1_v5_gn_3_54101 Lactuca sativa HOM05D005467 ORTHO05D006523 3.8e-113 412.5 276 72.1
Nitab4.5_0000293g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 7.1e-112 408.3 422 48.3
ATR0041G011 Amborella trichopoda HOM05D005467 ORTHO05D006523 6.7e-110 401.7 423 48.5
AagrBONN_evm.TU.Sc2ySwM_344.4352 Anthoceros agrestis HOM05D005467 ORTHO05D006523 6.9e-107 391.7 412 49.5
Nitab4.5_0000350g0270 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.6e-103 380.6 418 46.9
Pp3c22_2590 Physcomitrium patens HOM05D005467 ORTHO05D006523 6.3e-100 368.6 417 47.2
HPP92_008650 Vanilla planifolia HOM05D005467 ORTHO05D006523 1.5e-98 364.0 276 63.4
Oeu064202.3 Olea europaea HOM05D005467 ORTHO05D006523 7.4e-93 345.1 269 65.8
Zm00001eb341680 Zea mays HOM05D005467 ORTHO05D006523 2.4e-91 340.1 315 55.2
CDE06G2222 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 2.5e-88 330.1 220 73.6
SEGI_12457 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 1.2e-87 327.8 268 61.6
CBR_g17592 Chara braunii HOM05D005467 ORTHO05D006523 2.1e-87 327.0 415 44.6
Peaxi162Scf00159g00824 Petunia axillaris HOM05D005467 ORTHO05D006523 1.8e-86 323.9 555 37.5
FAN17G2566 Fragaria x ananassa HOM05D005467 ORTHO05D006523 4.4e-85 319.3 190 83.2
Sopen02g012020 Solanum pennellii HOM05D005467 ORTHO05D006523 1.7e-84 317.4 427 39.8
Sopen02g012000 Solanum pennellii HOM05D005467 ORTHO05D006523 6.3e-84 315.5 423 39.7
Peaxi162Scf00159g00823 Petunia axillaris HOM05D005467 ORTHO05D006523 9.1e-83 311.6 446 39.9
PGSC0003DMG400029189 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.6e-82 310.8 427 39.3
Dinv04888 Davidia involucrata HOM05D005467 ORTHO05D006523 3.5e-82 309.7 186 80.6
Sopen02g012010 Solanum pennellii HOM05D005467 ORTHO05D006523 4.0e-78 296.2 426 38.3
PGSC0003DMG400017873 Solanum tuberosum HOM05D005467 ORTHO05D006523 4.0e-78 296.2 418 37.6
Solyc02g038680.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 5.3e-75 285.8 422 38.6
Solyc02g038670.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 3.0e-62 243.4 427 33.7
Haze_11050 Corylus avellana HOM05D005467 ORTHO05D006523 1.4e-59 234.6 201 61.7
Cc11_g09120 Coffea canephora HOM05D005467 ORTHO05D006523 9.2e-59 231.9 145 76.6
Haze_11049 Corylus avellana HOM05D005467 ORTHO05D006523 2.0e-58 230.7 164 71.3
Solyc02g038650.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 3.8e-57 226.5 340 37.1
MCO12G173 Micromonas commoda HOM05D005467 ORTHO05D006523 3.6e-55 219.9 428 34.6
PRCOL_00002109 Prasinoderma coloniale HOM05D005467 ORTHO05D006523 2.6e-53 213.8 390 35.9
Peaxi162Scf00205g00812 Petunia axillaris HOM05D005467 ORTHO05D006523 6.4e-52 209.1 405 34.1
Lsat_1_v5_gn_3_86380 Lactuca sativa HOM05D005467 ORTHO05D006523 1.1e-48 198.4 256 45.7
FAN17G1461 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.5e-45 188.0 112 84.8
Sed0021963 Sechium edule HOM05D005467 ORTHO05D006523 1.5e-45 188.0 263 44.5
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 5.8e-45 186.0 104 88.5
PGSC0003DMG400029188 Solanum tuberosum HOM05D005467 ORTHO05D006523 8.3e-44 182.2 322 33.5
Sopen02g012080 Solanum pennellii HOM05D005467 ORTHO05D006523 2.3e-41 174.1 396 30.3
Lsat_1_v5_gn_3_107041 Lactuca sativa HOM05D005467 ORTHO05D006523 8.6e-41 172.2 207 50.2
Solyc02g038660.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 9.5e-40 168.7 328 33.2
Nitab4.5_0004524g0050 Nicotiana tabacum HOM05D005467 ORTHO05D006523 4.0e-38 163.3 116 63.8
Lsat_1_v5_gn_4_96160 Lactuca sativa HOM05D005467 ORTHO05D006523 8.3e-36 155.6 111 71.2
Lsat_1_v5_gn_7_58700 Lactuca sativa HOM05D005467 ORTHO05D006523 1.1e-35 155.2 111 71.2
RcHm_v2.0_Chr3g0493761 Rosa chinensis HOM05D005467 ORTHO05D006523 1.9e-32 144.4 85 84.7
Nitab4.5_0004367g0150 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.2e-31 141.7 133 50.4
Nitab4.5_0019054g0020 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.8e-31 140.6 273 32.6
PGSC0003DMG400023165 Solanum tuberosum HOM05D005467 ORTHO05D006523 5.2e-30 136.3 182 40.1
Nitab4.5_0002820g0080 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.5e-29 134.8 125 51.2
PGSC0003DMG400017876 Solanum tuberosum HOM05D005467 ORTHO05D006523 9.9e-29 132.1 206 36.9
Nitab4.5_0002820g0070 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.2e-26 125.2 145 45.5
Lsat_1_v5_gn_6_22900 Lactuca sativa HOM05D005467 ORTHO05D006523 3.3e-24 117.1 76 76.3
Nitab4.5_0000688g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 7.3e-24 115.9 169 39.1
MD05G1282800 Malus domestica HOM05D005467 ORTHO05D006523 9.6e-24 115.5 178 44.9
Solyc02g038700.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 6.9e-22 109.4 227 30.8
Phvul.008G137000 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 1.3e-20 105.1 55 83.6
CDE07G1108 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 2.8e-15 87.4 80 51.2
PGSC0003DMG400038827 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.1e-14 85.5 104 36.5
PGSC0003DMG400017875 Solanum tuberosum HOM05D005467 ORTHO05D006523 4.5e-13 80.1 77 45.5
SEGI_39271 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 4.6e-10 70.1 85 48.2
Cre12.g549600 Chlamydomonas reinhardtii HOM05D005467 ORTHO05D006523 2.3e-09 67.8 257 24.9
arahy.Tifrunner.gnm1.ann1.68D7VA Arachis hypogaea HOM05D007334 ORTHO05D011873 9.6e-08 62.4 73 47.9
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 2.4e-06 57.8 63 44.4
MBI05_g15354_MAGBIO Magnolia biondii HOM05D002523 ORTHO05D022880 4.0e-06 57.0 44 63.6
CDE07G1559 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 5.3e-06 56.6 47 57.4
MBI10_g06898_MAGBIO Magnolia biondii HOM05D002523 ORTHO05D006523 6.9e-06 56.2 59 52.5


User provided reference genes

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