Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 8.0e-143 510.4 251 100.0
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 3.4e-125 451.8 251 89.2
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 8.3e-124 447.2 251 87.6
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 4.4e-117 424.9 251 84.1
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.1e-114 416.0 251 82.9
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 7.8e-114 414.1 251 82.5
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 1.1e-112 410.2 251 81.7
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.1e-112 410.2 251 81.7
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.1e-112 410.2 251 81.7
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 7.6e-109 397.5 251 78.1
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 1.7e-108 396.4 251 77.7
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 1.7e-108 396.4 251 77.7
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 6.4e-108 394.4 251 76.9
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 2.4e-107 392.5 249 73.9
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 3.2e-107 392.1 249 75.1
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 5.4e-107 391.3 251 74.9
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 5.4e-107 391.3 251 76.5
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 7.1e-107 391.0 250 77.2
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 1.6e-106 389.8 251 74.1
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 2.1e-106 389.4 251 77.3
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 2.7e-106 389.0 250 76.8
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 3.5e-106 388.7 251 76.9
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 4.6e-106 388.3 251 75.7
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 7.8e-106 387.5 251 75.7
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 1.7e-105 386.3 251 74.1
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 1.7e-105 386.3 251 76.1
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 1.1e-104 383.6 252 73.8
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.9e-104 382.9 253 74.3
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 3.3e-104 382.1 252 73.0
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 7.3e-104 380.9 251 74.5
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 1.6e-103 379.8 252 74.2
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 2.1e-103 379.4 249 73.5
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 3.6e-103 378.6 251 76.5
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 4.7e-103 378.3 252 73.4
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 6.2e-103 377.9 253 71.5
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 8.1e-103 377.5 251 74.9
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 8.1e-103 377.5 251 73.3
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 1.1e-102 377.1 251 72.1
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 1.4e-102 376.7 251 72.5
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 1.4e-102 376.7 251 75.7
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.8e-102 376.3 262 71.8
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 2.4e-102 375.9 251 73.7
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 3.1e-102 375.6 250 71.6
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 5.2e-102 374.8 251 73.3
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 6.8e-102 374.4 249 72.3
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 6.8e-102 374.4 251 72.1
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 6.8e-102 374.4 252 74.6
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 2.0e-101 372.9 251 73.7
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 2.0e-101 372.9 251 72.9
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 3.4e-101 372.1 251 72.9
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 3.4e-101 372.1 251 72.9
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 4.4e-101 371.7 252 71.4
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 4.4e-101 371.7 251 74.9
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 5.8e-101 371.3 251 70.9
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 5.8e-101 371.3 251 74.9
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 7.6e-101 370.9 253 71.5
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 1.3e-100 370.2 251 72.9
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 1.3e-100 370.2 251 71.3
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 1.3e-100 370.2 253 71.9
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.3e-100 370.2 251 71.7
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.7e-100 369.8 251 73.7
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.7e-100 369.8 251 73.7
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 2.2e-100 369.4 251 73.7
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 2.2e-100 369.4 251 71.3
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 2.9e-100 369.0 251 72.5
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 3.8e-100 368.6 251 74.5
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 3.8e-100 368.6 252 71.8
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 4.9e-100 368.2 251 71.7
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 6.4e-100 367.9 251 73.7
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 6.4e-100 367.9 253 71.1
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 8.4e-100 367.5 251 70.9
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 8.4e-100 367.5 251 73.3
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 1.9e-99 366.3 251 72.5
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 1.9e-99 366.3 252 70.6
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 2.4e-99 365.9 251 72.1
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 2.4e-99 365.9 251 72.1
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 5.4e-99 364.8 251 71.7
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 1.2e-98 363.6 251 70.1
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 1.6e-98 363.2 251 70.1
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 1.6e-98 363.2 253 70.4
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 2.1e-98 362.8 275 68.0
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 2.1e-98 362.8 244 73.8
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 2.1e-98 362.8 275 68.0
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 2.1e-98 362.8 244 73.8
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 3.5e-98 362.1 244 73.8
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 3.5e-98 362.1 251 69.7
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 4.6e-98 361.7 251 70.5
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 6.0e-98 361.3 242 72.7
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 7.8e-98 360.9 253 68.8
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 7.8e-98 360.9 251 72.1
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 1.3e-97 360.1 251 69.3
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 1.7e-97 359.8 251 72.1
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 2.3e-97 359.4 252 69.4
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 2.3e-97 359.4 251 70.1
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 2.3e-97 359.4 249 70.3
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 3.0e-97 359.0 251 69.3
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 3.9e-97 358.6 251 68.5
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 6.6e-97 357.8 249 68.7
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 2.5e-96 355.9 251 68.9
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 4.3e-96 355.1 251 68.9
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 1.6e-95 353.2 253 69.2
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.6e-95 353.2 253 67.6
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 2.1e-95 352.8 251 69.3
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.4e-94 350.1 251 65.3
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 6.9e-94 347.8 254 66.5
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.0e-93 346.3 251 66.9
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 2.6e-93 345.9 257 66.9
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 1.7e-92 343.2 254 68.5
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 1.1e-91 340.5 226 74.3
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 1.4e-91 340.1 254 66.1
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 1.2e-90 337.0 254 66.5
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 6.0e-90 334.7 291 60.5
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 1.7e-89 333.2 295 59.3
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 4.3e-88 328.6 251 65.3
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 1.6e-87 326.6 252 62.3
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 2.1e-87 326.2 257 64.6
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 4.8e-87 325.1 243 66.7
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.4e-86 323.6 242 65.7
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 3.1e-86 322.4 242 65.7
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 2.0e-85 319.7 251 64.9
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 9.9e-85 317.4 242 65.7
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 4.9e-84 315.1 245 67.3
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 9.3e-83 310.8 251 63.3
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 9.3e-83 310.8 185 81.6
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 6.0e-82 308.1 202 75.7
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 1.0e-81 307.4 253 62.5
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 9.6e-80 300.8 175 80.0
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 1.8e-78 296.6 251 60.6
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 1.2e-77 293.9 174 80.5
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 3.5e-74 282.3 251 60.2
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 4.1e-70 268.9 153 81.7
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.9e-67 260.0 147 85.7
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.9e-67 260.0 147 85.7
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 9.3e-67 257.7 187 69.5
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.9e-64 250.0 183 71.0
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 4.1e-62 242.3 200 56.0
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 5.7e-56 221.9 180 57.8
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 2.5e-51 206.5 175 58.9
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 2.2e-47 193.4 189 56.6
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 2.2e-47 193.4 189 56.6
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 4.8e-47 192.2 194 53.6
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 9.4e-43 177.9 110 76.4
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 3.6e-42 176.0 163 49.7
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.9e-36 156.4 88 81.8
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 6.1e-34 148.7 133 53.4
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 1.7e-31 140.6 73 95.9
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 1.1e-27 127.9 84 73.8
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.9e-27 127.1 215 34.9
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 8.8e-25 118.2 63 82.5
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 4.4e-24 115.9 168 38.1
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 6.3e-23 112.1 99 57.6
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 6.3e-23 112.1 99 57.6
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 2.4e-22 110.2 75 77.3
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 9.2e-22 108.2 108 59.3
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 7.0e-14 82.0 94 53.2
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 2.0e-13 80.5 83 57.8
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 2.1e-10 70.5 184 28.8
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 8.0e-10 68.6 193 32.1
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 3.1e-09 66.6 52 57.7
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 9.8e-08 61.6 47 66.0
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 1.4e-06 57.8 54 55.6
PRCOL_00001474 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 3.2e-06 56.6 185 25.9


User provided reference genes

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