Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1026300 Malus domestica HOM05D005158 ORTHO05D005510 1.7e-255 885.6 467 100.0
Prupe.1G327200 Prunus persica HOM05D005158 ORTHO05D005510 1.7e-210 736.1 462 83.3
RcHm_v2.0_Chr4g0441611 Rosa chinensis HOM05D005158 ORTHO05D005510 2.2e-186 656.0 463 75.6
FvH4_4g32690 Fragaria vesca HOM05D005158 ORTHO05D005510 3.1e-172 609.0 463 73.4
FAN12G3950 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.2e-171 607.1 464 73.7
FAN17G2123 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.5e-168 595.5 396 77.8
QL03p033448 Quercus lobata HOM05D005158 ORTHO05D005510 3.0e-159 565.8 450 70.4
TAR374G1701 Trochodendron aralioides HOM05D005158 ORTHO05D005510 4.3e-158 562.0 478 65.5
CSS0029988 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 3.6e-157 558.9 468 67.3
Manes.17G078700 Manihot esculenta HOM05D005158 ORTHO05D005510 2.0e-155 553.1 378 74.1
FAN22G1395 Fragaria x ananassa HOM05D005158 ORTHO05D005510 7.6e-155 551.2 397 74.1
Ciclev10015117m.g Citrus clementina HOM05D005158 ORTHO05D005510 1.1e-153 547.4 460 63.9
Duzib251G0375 Durio zibethinus HOM05D005158 ORTHO05D005510 7.9e-152 541.2 463 63.3
Actinidia36249 Actinidia chinensis HOM05D005158 ORTHO05D005510 1.0e-151 540.8 468 63.0
Sabra10G0081500 Salix brachista HOM05D005158 ORTHO05D005510 2.3e-151 539.7 453 64.5
vmacro00408 Vaccinium macrocarpon HOM05D005158 ORTHO05D005510 2.3e-151 539.7 535 58.1
Haze_10977 Corylus avellana HOM05D005158 ORTHO05D005510 3.9e-151 538.9 531 61.0
GSVIVG01011734001 Vitis vinifera HOM05D005158 ORTHO05D005510 1.1e-150 537.3 472 65.7
CANSAT64G2776 Cannabis sativa HOM05D005158 ORTHO05D005510 3.3e-150 535.8 466 62.9
Potri.010G111100 Populus trichocarpa HOM05D005158 ORTHO05D005510 9.6e-150 534.3 440 64.3
COL.COLO4_13149 Corchorus olitorius HOM05D005158 ORTHO05D005510 1.1e-148 530.8 370 74.1
Nn4g24217 Nelumbo nucifera HOM05D005158 ORTHO05D005510 1.9e-145 520.0 393 66.2
HanXRQChr08g0212241 Helianthus annuus HOM05D005158 ORTHO05D005510 9.3e-145 517.7 358 70.4
Cfa008628 Carpinus fangiana HOM05D005158 ORTHO05D005510 1.6e-144 516.9 411 68.9
FvH4_5g11940 Fragaria vesca HOM05D005158 ORTHO05D005510 1.6e-144 516.9 400 69.8
CiPaw.05G195800 Carya illinoinensis HOM05D005158 ORTHO05D005510 2.7e-144 516.2 433 64.7
Dinv28033 Davidia involucrata HOM05D005158 ORTHO05D005510 1.3e-143 513.8 421 68.6
FAN18G4517 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.0e-143 512.7 408 68.6
CSS0001942 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 5.7e-142 508.4 396 69.9
FAN18G3280 Fragaria x ananassa HOM05D005158 ORTHO05D005510 7.4e-142 508.1 398 69.1
Dinv27619 Davidia involucrata HOM05D005158 ORTHO05D005510 2.1e-141 506.5 356 70.8
Cc11_g08410 Coffea canephora HOM05D005158 ORTHO05D005510 1.4e-140 503.8 351 71.8
Cc11_g08400 Coffea canephora HOM05D005158 ORTHO05D005510 9.0e-140 501.1 383 67.4
GSVIVG01008427001 Vitis vinifera HOM05D005158 ORTHO05D005510 3.4e-139 499.2 351 70.4
FAN13G1699 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.2e-138 496.5 411 66.4
Migut.L00352 Erythranthe guttata HOM05D005158 ORTHO05D005510 1.1e-137 494.2 479 61.2
Phvul.003G032200 Phaseolus vulgaris HOM05D005158 ORTHO05D005510 2.5e-137 493.0 395 67.8
Lsat_1_v5_gn_8_45001 Lactuca sativa HOM05D005158 ORTHO05D005510 4.2e-137 492.3 463 62.2
Sc14g0007050 Simmondsia chinensis HOM05D005158 ORTHO05D005510 1.6e-136 490.3 356 69.7
Carub.0002s1765 Capsella rubella HOM05D005158 ORTHO05D005510 1.3e-135 487.3 359 67.1
Sc14g0006290 Simmondsia chinensis HOM05D005158 ORTHO05D005510 2.3e-135 486.5 467 58.5
PSO478G5200 Papaver somniferum HOM05D005158 ORTHO05D005510 3.9e-135 485.7 482 56.2
QL10p028515 Quercus lobata HOM05D005158 ORTHO05D005510 3.9e-135 485.7 356 67.7
SalBow8G1650 Salvia bowleyana HOM05D005158 ORTHO05D005510 5.1e-135 485.3 470 59.1
Aqoxy3G00071 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 1.9e-134 483.4 353 68.8
Lalb_Chr17g0338591 Lupinus albus HOM05D005158 ORTHO05D005510 2.5e-134 483.0 355 70.4
SalBow8G5629 Salvia bowleyana HOM05D005158 ORTHO05D005510 2.5e-134 483.0 470 58.7
COL.COLO4_37683 Corchorus olitorius HOM05D000282 ORTHO05D005510 9.7e-134 481.1 400 60.8
MD06G1226600 Malus domestica HOM05D005158 ORTHO05D005510 9.7e-134 481.1 380 63.9
RcHm_v2.0_Chr7g0178481 Rosa chinensis HOM05D005158 ORTHO05D005510 9.7e-134 481.1 370 64.9
FAN04G1228 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.8e-133 479.6 348 66.1
Ciclev10008271m.g Citrus clementina HOM05D005158 ORTHO05D005510 3.7e-133 479.2 391 61.9
Eucgr.G02179 Eucalyptus grandis HOM05D005158 ORTHO05D005510 4.8e-133 478.8 461 60.3
PSO017G1154 Papaver somniferum HOM05D005158 ORTHO05D005510 4.8e-133 478.8 487 56.1
PGR119G0382 Punica granatum HOM05D005158 ORTHO05D005510 1.1e-132 477.6 469 59.7
FAN08G3331 Fragaria x ananassa HOM05D005158 ORTHO05D005510 6.9e-132 474.9 372 68.5
CSS0029687 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 2.0e-131 473.4 340 69.1
FvH4_5g17290 Fragaria vesca HOM05D005158 ORTHO05D005510 2.0e-131 473.4 348 66.1
Thecc.03G054800 Theobroma cacao HOM05D005158 ORTHO05D005510 7.7e-131 471.5 465 54.4
CiPaw.15G143000 Carya illinoinensis HOM05D005158 ORTHO05D005510 5.0e-130 468.8 359 66.6
MELO3C014995.2 Cucumis melo HOM05D005158 ORTHO05D005510 1.1e-129 467.6 366 64.8
CsaV3_5G015040 Cucumis sativus L. HOM05D005158 ORTHO05D005510 1.1e-129 467.6 362 65.5
MSTRG.13599 Avicennia marina HOM05D005158 ORTHO05D005510 1.2e-128 464.2 323 71.8
MSTRG.4576 Avicennia marina HOM05D005158 ORTHO05D005510 2.1e-128 463.4 386 61.7
Lj2g0016958 Lotus japonicus HOM05D005158 ORTHO05D005510 2.1e-128 463.4 364 66.5
Duzib205G1388 Durio zibethinus HOM05D005158 ORTHO05D005510 3.6e-128 462.6 358 63.7
SGA_v2.0_scaffold234G43623 Striga asiatica HOM05D005158 ORTHO05D005510 1.8e-127 460.3 381 64.8
ATR0665G468 Amborella trichopoda HOM05D005158 ORTHO05D005510 3.0e-127 459.5 350 66.9
ClCG07G007220 Citrullus lanatus HOM05D005158 ORTHO05D005510 5.1e-127 458.8 361 64.8
HanXRQChr08g0212251 Helianthus annuus HOM05D005158 ORTHO05D005510 1.5e-126 457.2 469 53.5
CAN.G236.18 Capsicum annuum HOM05D005158 ORTHO05D005510 2.0e-126 456.8 400 60.5
Lj6A744G51 Lonicera japonica HOM05D005158 ORTHO05D005510 2.0e-126 456.8 318 72.6
Sabra15G0037900 Salix brachista HOM05D005158 ORTHO05D005510 9.7e-126 454.5 370 63.0
ECA233G1067 Erigeron canadensis HOM05D005158 ORTHO05D005510 1.3e-125 454.1 320 69.4
Sopen05g014580 Solanum pennellii HOM05D005158 ORTHO05D005510 1.7e-125 453.8 389 61.7
TWI75G0580 Tripterygium wilfordii HOM05D005158 ORTHO05D005510 1.7e-125 453.8 416 60.8
Haze_18844 Corylus avellana HOM05D005158 ORTHO05D005510 2.8e-125 453.0 519 50.9
Sed0000270 Sechium edule HOM05D005158 ORTHO05D005510 3.7e-125 452.6 459 56.4
Cc04_g06310 Coffea canephora HOM05D005158 ORTHO05D005510 1.4e-124 450.7 355 63.9
FAN18G0401 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.0e-123 446.8 300 70.3
Ah.02g127790 Amaranthus hybridus HOM05D005158 ORTHO05D005510 7.7e-123 444.9 324 68.5
Atru.chr9.1740 Acer truncatum HOM05D005158 ORTHO05D005510 1.7e-122 443.7 317 68.1
Oeu046166.1 Olea europaea HOM05D005158 ORTHO05D005510 2.2e-122 443.4 350 62.9
CDE05G1850 Ceratophyllum demersum HOM05D005158 ORTHO05D005510 2.9e-122 443.0 349 66.5
AUR62014187 Chenopodium quinoa HOM05D005158 ORTHO05D005510 5.5e-121 438.7 413 57.9
Migut.D01553 Erythranthe guttata HOM05D005158 ORTHO05D005510 7.9e-120 434.9 352 59.9
FAN13G2578 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.9e-114 416.4 411 59.9
Rhsim09G0065900 Rhododendron simsii HOM05D005158 ORTHO05D005510 1.5e-113 414.1 367 62.4
Rhsim09G0065800 Rhododendron simsii HOM05D005158 ORTHO05D005510 7.2e-113 411.8 341 66.0
CSS0046275 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 3.0e-111 406.4 324 63.9
AUR62039517 Chenopodium quinoa HOM05D005158 ORTHO05D005510 1.3e-109 401.0 381 55.4
SalBow1G1317 Salvia bowleyana HOM05D005158 ORTHO05D005510 1.6e-107 394.0 298 63.8
VMungo1215G0718 Vigna mungo HOM05D005158 ORTHO05D005510 2.2e-106 390.2 486 49.0
Hund20682 Selenicereus undatus HOM05D005158 ORTHO05D005510 2.1e-104 383.6 257 71.2
Os03g0707200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 6.1e-104 382.1 294 63.3
Peaxi162Scf00159g01112 Petunia axillaris HOM05D005158 ORTHO05D005510 5.5e-97 359.0 256 66.8
Dinv14415 Davidia involucrata HOM05D005158 ORTHO05D005510 3.7e-93 346.3 500 48.6
Prupe.5G232900 Prunus persica HOM05D005158 ORTHO05D005510 1.8e-84 317.4 237 65.8
HPP92_016306 Vanilla planifolia HOM05D005158 ORTHO05D005510 5.9e-83 312.4 327 54.4
FAN07G0555 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.0e-78 297.4 269 67.3
Solyc05g017900.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 3.7e-77 293.1 321 53.6
Thecc.02G284700 Theobroma cacao HOM05D005158 ORTHO05D005510 5.0e-74 282.7 207 67.1
AUR62014186 Chenopodium quinoa HOM05D005158 ORTHO05D005510 1.5e-73 281.2 277 53.4
Pp3c5_19920 Physcomitrium patens HOM05D005158 ORTHO05D005510 2.8e-72 276.9 295 46.8
HPP92_016287 Vanilla planifolia HOM05D005158 ORTHO05D005510 3.1e-71 273.5 352 44.9
Potri.008G130950 Populus trichocarpa HOM05D005158 ORTHO05D005510 7.5e-70 268.9 279 53.8
Oeu003374.1 Olea europaea HOM05D005158 ORTHO05D005510 7.8e-67 258.8 281 54.8
Zm00001eb054470 Zea mays HOM05D005158 ORTHO05D005510 2.3e-66 257.3 225 59.6
Oeu014055.2 Olea europaea HOM05D005158 ORTHO05D005510 1.5e-57 228.0 181 63.0
AagrBONN_evm.TU.Sc2ySwM_344.3657 Anthoceros agrestis HOM05D005158 ORTHO05D005510 8.4e-53 212.2 242 45.0
SEGI_17459 Sequoiadendron giganteum HOM05D005158 ORTHO05D005510 1.6e-51 208.0 188 52.1
Cpa.g.sc570.2 Carica papaya HOM05D005158 ORTHO05D005510 6.0e-51 206.1 203 56.7
PRCOL_00003969 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 3.0e-50 203.8 296 40.5
Manes.06G007150 Manihot esculenta HOM05D005158 ORTHO05D005510 6.6e-42 176.0 200 51.0
HPP92_027195 Vanilla planifolia HOM05D005158 ORTHO05D005510 1.1e-39 168.7 186 50.0
Zm00001eb280420 Zea mays HOM05D005158 ORTHO05D005510 3.4e-38 163.7 146 54.8
TAR622G0559 Trochodendron aralioides HOM05D005158 ORTHO05D005510 1.3e-34 151.8 230 44.3
HanXRQChr08g0212291 Helianthus annuus HOM05D005158 ORTHO05D005510 1.8e-34 151.4 111 63.1
MD16G1025900 Malus domestica HOM05D005158 ORTHO05D005510 8.7e-34 149.1 78 96.2
Duzib068G0898 Durio zibethinus HOM05D005158 ORTHO05D005510 4.8e-32 143.3 173 46.8
Gohir.D02G122150 Gossypium hirsutum HOM05D005158 ORTHO05D005510 1.2e-27 128.6 193 43.5
PGR044G0956 Punica granatum HOM05D005158 ORTHO05D005510 1.2e-27 128.6 328 30.5
Os06g0269200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 2.1e-27 127.9 82 72.0
Prupe.5G232800 Prunus persica HOM05D005158 ORTHO05D005510 2.1e-27 127.9 86 70.9
DCAR_007307 Daucus carota HOM05D005158 ORTHO05D005510 3.5e-27 127.1 98 67.3
AagrBONN_evm.TU.Sc2ySwM_368.719 Anthoceros agrestis HOM05D005158 ORTHO05D005510 2.5e-25 120.9 312 29.5
Thecc.02G284900 Theobroma cacao HOM05D005158 ORTHO05D005510 8.2e-24 115.9 189 42.3
Gorai.005G131900 Gossypium raimondii HOM05D005158 ORTHO05D005510 2.4e-23 114.4 145 46.2
Solyc05g017940.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 4.1e-23 113.6 98 60.2
Peaxi162Scf00159g01110 Petunia axillaris HOM05D005158 ORTHO05D005510 6.9e-23 112.8 100 60.0
PRCOL_00000423 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 2.0e-22 111.3 206 35.9
Pp3c9_21990 Physcomitrium patens HOM05D005158 ORTHO05D005510 4.5e-22 110.2 346 26.9
C06p44960 Brassica napus HOM05D005158 ORTHO05D005510 3.5e-19 100.5 107 54.2
HanXRQChr08g0212271 Helianthus annuus HOM05D005158 ORTHO05D005510 4.6e-19 100.1 63 73.0
MCO07G148 Micromonas commoda HOM05D005158 ORTHO05D005510 6.7e-18 96.3 190 33.7
Manes.09G075257 Manihot esculenta HOM05D005158 ORTHO05D005510 2.8e-16 90.9 98 52.0
SMO118G0092 Selaginella moellendorffii HOM05D032652 ORTHO05D005510 4.1e-15 87.0 269 26.0
SMO263G0001 Selaginella moellendorffii HOM05D032652 ORTHO05D005510 9.0e-15 85.9 269 26.0
AagrBONN_evm.TU.Sc2ySwM_117.460 Anthoceros agrestis HOM05D005158 ORTHO05D005510 1.5e-14 85.1 249 28.5
Cpa.g.sc130.33 Carica papaya HOM05D005158 ORTHO05D005510 4.5e-14 83.6 69 58.0
RcHm_v2.0_Chr7g0199801 Rosa chinensis HOM05D005158 ORTHO05D005510 4.5e-14 83.6 56 69.6
MCO07G404 Micromonas commoda HOM05D005158 ORTHO05D005510 1.1e-12 79.0 260 25.8
Pp3c15_24210 Physcomitrium patens HOM05D005158 ORTHO05D005510 7.2e-12 76.3 252 28.2
MCO04G437 Micromonas commoda HOM05D005158 ORTHO05D005510 1.0e-10 72.4 312 26.6
Aqoxy2G01678 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 9.7e-09 65.9 62 43.5
MCO15G091 Micromonas commoda HOM05D036318 ORTHO05D005510 8.2e-08 62.8 354 25.4
CBR_g49491 Chara braunii HOM05D005158 ORTHO05D005510 4.1e-07 60.5 188 26.1


User provided reference genes

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