Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 9.7e-175 616.7 307 100.0
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 6.2e-129 464.5 289 81.7
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 1.4e-125 453.4 283 82.0
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 1.2e-111 407.1 289 73.4
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 2.0e-111 406.4 290 71.4
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 7.1e-109 397.9 288 70.8
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 6.6e-107 391.3 289 70.9
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 1.5e-103 380.2 292 65.8
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 1.5e-103 380.2 290 66.2
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 3.4e-103 379.0 280 68.2
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 3.4e-103 379.0 289 67.5
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 3.8e-102 375.6 291 68.0
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 3.8e-102 375.6 281 68.0
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 2.4e-101 372.9 282 67.4
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.7e-100 369.4 279 65.9
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 3.5e-100 369.0 281 66.5
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 3.5e-100 369.0 279 65.9
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 7.8e-100 367.9 279 65.6
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 7.8e-100 367.9 279 65.6
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 1.3e-99 367.1 292 66.8
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.3e-99 366.3 282 67.0
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 5.1e-99 365.2 261 70.1
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.5e-98 363.6 279 65.6
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 3.3e-98 362.5 298 64.4
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 3.3e-98 362.5 258 70.2
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 4.3e-98 362.1 274 65.3
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 7.3e-98 361.3 274 67.5
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 1.3e-97 360.5 277 66.1
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 1.3e-97 360.5 272 67.3
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 1.6e-97 360.1 282 66.7
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 2.1e-97 359.8 278 64.4
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 2.1e-97 359.8 274 65.7
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 4.8e-97 358.6 280 64.3
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 8.1e-97 357.8 281 64.4
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 2.4e-96 356.3 277 63.9
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 4.0e-96 355.5 298 60.4
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 5.3e-96 355.1 287 64.5
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 6.9e-96 354.8 297 65.0
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 9.9e-95 350.9 300 59.7
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 9.9e-95 350.9 280 62.5
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 6.4e-94 348.2 280 65.4
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 8.4e-94 347.8 294 60.5
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 8.4e-94 347.8 285 62.1
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 1.4e-93 347.1 281 63.3
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 1.4e-93 347.1 257 69.3
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 1.4e-93 347.1 278 64.0
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 3.2e-93 345.9 295 62.4
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 3.2e-93 345.9 272 63.2
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 4.2e-93 345.5 292 62.7
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 4.2e-93 345.5 302 60.9
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 2.1e-92 343.2 275 62.5
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 2.7e-92 342.8 283 60.8
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 3.5e-92 342.4 282 61.7
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 4.6e-92 342.0 263 64.6
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 3.9e-91 339.0 282 63.5
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 5.1e-91 338.6 255 64.7
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 6.6e-91 338.2 266 65.4
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 8.7e-91 337.8 270 63.3
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 8.7e-91 337.8 270 63.3
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 1.6e-89 333.6 265 64.5
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 2.1e-89 333.2 264 64.0
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 3.6e-89 332.4 264 62.9
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 4.8e-89 332.0 261 62.8
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 4.8e-89 332.0 321 55.8
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 4.0e-88 328.9 265 63.4
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 4.0e-88 328.9 274 59.9
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 6.9e-88 328.2 250 64.4
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 9.0e-88 327.8 270 62.6
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 2.6e-87 326.2 283 59.0
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 2.6e-87 326.2 292 58.2
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 3.4e-87 325.9 253 64.4
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 5.8e-87 325.1 290 60.7
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 7.6e-87 324.7 260 63.8
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 7.6e-87 324.7 273 59.3
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.3e-86 323.9 227 73.6
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 2.2e-86 323.2 275 61.1
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 2.2e-86 323.2 292 59.9
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 4.9e-86 322.0 267 62.2
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 4.9e-86 322.0 277 64.6
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.4e-85 319.7 261 63.6
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.4e-85 319.7 320 58.4
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 1.0e-83 314.3 234 69.2
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 1.8e-83 313.5 235 65.5
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 2.5e-82 309.7 317 52.7
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 1.3e-81 307.4 243 65.8
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 2.1e-81 306.6 272 58.1
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 2.1e-81 306.6 242 65.7
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 8.1e-81 304.7 262 58.8
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 5.3e-80 302.0 254 60.6
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 9.0e-80 301.2 296 52.7
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.5e-79 300.4 242 63.2
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 2.2e-78 296.6 248 61.7
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 2.9e-78 296.2 222 66.7
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 4.9e-78 295.4 250 57.6
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 2.5e-77 293.1 267 55.4
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 5.5e-77 292.0 248 57.3
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 1.2e-76 290.8 253 62.5
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 7.9e-76 288.1 272 54.8
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 3.0e-75 286.2 275 54.2
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 3.9e-75 285.8 250 56.4
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 2.8e-73 279.6 203 70.4
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 2.6e-71 273.1 247 59.9
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 8.5e-70 268.1 270 51.1
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 5.1e-67 258.8 263 50.2
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 6.7e-67 258.5 260 52.7
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 1.1e-66 257.7 274 53.6
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 4.8e-65 252.3 265 56.2
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.2e-62 243.4 211 57.8
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.2e-62 243.4 227 59.9
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.2e-62 243.4 227 59.9
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 2.1e-60 236.9 228 56.1
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 3.6e-60 236.1 250 50.8
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 1.1e-58 231.1 274 47.8
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 2.2e-57 226.9 243 49.4
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 6.3e-57 225.3 269 46.1
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 6.5e-54 215.3 171 64.9
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 1.4e-53 214.2 208 55.8
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 1.4e-53 214.2 247 50.6
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.4e-53 214.2 192 55.7
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.4e-51 207.6 241 47.7
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 3.1e-48 196.4 207 55.1
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 5.3e-48 195.7 219 50.2
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 3.8e-46 189.5 213 51.2
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 1.6e-44 184.1 122 71.3
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 3.6e-44 183.0 135 65.9
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 1.8e-43 180.6 175 57.7
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 3.0e-43 179.9 153 59.5
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 5.7e-42 175.6 130 67.7
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 7.0e-40 168.7 239 41.8
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 2.2e-38 163.7 247 38.9
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 2.9e-38 163.3 176 50.6
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 2.4e-32 143.7 148 51.4
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 4.1e-32 142.9 87 78.2
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.5e-29 133.7 124 58.1
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 1.2e-28 131.3 281 31.7
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 2.1e-28 130.6 158 46.2
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 4.7e-28 129.4 90 72.2
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 1.4e-24 117.9 110 56.4
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 4.1e-24 116.3 104 53.8
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 6.4e-17 92.4 170 32.4
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 1.1e-13 81.6 170 36.5
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.8e-11 74.3 68 57.4
ATR0594G067 Amborella trichopoda HOM05D005212 ORTHO05D006353 9.8e-10 68.6 66 54.5
PRCOL_00004527 Prasinoderma coloniale HOM05D005212 ORTHO05D006353 3.5e-07 60.1 176 30.1
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 6.0e-07 59.3 62 45.2
Peaxi162Scf00376g00009 Petunia axillaris HOM05D005212 ORTHO05D006353 7.8e-07 58.9 31 80.6


User provided reference genes

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