Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1006000 Malus domestica HOM05D007059 ORTHO05D009155 7.1e-127 457.2 223 100.0
Prupe.1G344600 Prunus persica HOM05D007059 ORTHO05D009155 2.2e-107 392.5 230 87.4
RcHm_v2.0_Chr4g0446371 Rosa chinensis HOM05D007059 ORTHO05D009155 4.1e-98 361.7 227 82.8
FvH4_4g36660 Fragaria vesca HOM05D007059 ORTHO05D009155 1.3e-96 356.7 227 80.6
FAN12G0665 Fragaria x ananassa HOM05D007059 ORTHO05D009155 1.3e-96 356.7 227 80.6
FAN07G2854 Fragaria x ananassa HOM05D007059 ORTHO05D009155 5.0e-96 354.8 227 80.6
Thecc.02G295400 Theobroma cacao HOM05D007059 ORTHO05D009155 5.2e-85 318.2 233 73.8
Atru.chr11.1222 Acer truncatum HOM05D007059 ORTHO05D009155 2.6e-84 315.8 231 72.7
TAR629G1440 Trochodendron aralioides HOM05D007059 ORTHO05D009155 1.8e-82 309.7 231 72.7
CiPaw.05G167400 Carya illinoinensis HOM05D007059 ORTHO05D009155 4.1e-82 308.5 231 71.9
GSVIVG01010187001 Vitis vinifera HOM05D007059 ORTHO05D009155 2.0e-81 306.2 228 71.9
COL.COLO4_16620 Corchorus olitorius HOM05D007059 ORTHO05D009155 5.5e-79 298.1 233 70.0
Nn4g24915 Nelumbo nucifera HOM05D007059 ORTHO05D009155 5.5e-79 298.1 229 70.3
Sabra10G0129500 Salix brachista HOM05D007059 ORTHO05D009155 5.5e-79 298.1 238 69.7
Ciclev10033522m.g Citrus clementina HOM05D007059 ORTHO05D009155 3.6e-78 295.4 228 70.6
Potri.010G169700 Populus trichocarpa HOM05D007059 ORTHO05D009155 8.0e-78 294.3 238 69.7
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 5.2e-77 291.6 233 69.5
Rhsim04G0168700 Rhododendron simsii HOM05D007059 ORTHO05D009155 2.8e-75 285.8 230 68.7
vmacro08590 Vaccinium macrocarpon HOM05D007059 ORTHO05D009155 2.8e-75 285.8 234 66.7
CSS0038027 Camellia sinensis var. sinensis HOM05D007059 ORTHO05D009155 8.3e-75 284.3 234 69.7
Lalb_Chr01g0001591 Lupinus albus HOM05D007059 ORTHO05D009155 8.3e-75 284.3 228 67.1
Lj3g0001367 Lotus japonicus HOM05D007059 ORTHO05D009155 5.4e-74 281.6 228 65.4
Eucgr.G02016 Eucalyptus grandis HOM05D007059 ORTHO05D009155 9.2e-74 280.8 227 67.0
Gohir.A01G145900 Gossypium hirsutum HOM05D007059 ORTHO05D009155 2.7e-73 279.3 232 66.8
Gohir.D01G138500 Gossypium hirsutum HOM05D007059 ORTHO05D009155 4.5e-73 278.5 232 66.8
Gorai.002G167400 Gossypium raimondii HOM05D007059 ORTHO05D009155 2.9e-72 275.8 232 66.8
TPR.G21564 Trifolium pratense HOM05D007059 ORTHO05D009155 8.6e-72 274.2 226 65.5
Psat7g174240 Pisum sativum HOM05D007059 ORTHO05D009155 1.5e-71 273.5 226 64.2
Manes.16G044801 Manihot esculenta HOM05D007059 ORTHO05D009155 2.5e-71 272.7 234 66.2
Glyma.11G104100 Glycine max HOM05D007059 ORTHO05D009155 4.3e-71 271.9 227 64.8
PSO782G1004 Papaver somniferum HOM05D007059 ORTHO05D009155 5.6e-71 271.6 235 63.4
Lj3A851T65 Lonicera japonica HOM05D007059 ORTHO05D009155 9.5e-71 270.8 246 62.2
Ca_03042_v3 Cicer arietinum L. HOM05D007059 ORTHO05D009155 1.2e-70 270.4 226 65.0
Phvul.011G032300 Phaseolus vulgaris HOM05D007059 ORTHO05D009155 2.1e-70 269.6 227 65.2
Aqoxy3G04246 Aquilegia oxysepala HOM05D007059 ORTHO05D009155 3.6e-70 268.9 228 65.8
Sc10g0008670 Simmondsia chinensis HOM05D007059 ORTHO05D009155 6.1e-70 268.1 232 62.1
Peaxi162Scf01172g00004 Petunia axillaris HOM05D007059 ORTHO05D009155 8.0e-70 267.7 233 64.4
Glyma.12G029100 Glycine max HOM05D007059 ORTHO05D009155 1.0e-69 267.3 227 63.4
Medtr4g074210 Medicago truncatula HOM05D007059 ORTHO05D009155 1.0e-69 267.3 229 62.4
Nitab4.5_0007261g0020 Nicotiana tabacum HOM05D007059 ORTHO05D009155 1.0e-69 267.3 186 75.8
PSO063G1277 Papaver somniferum HOM05D007059 ORTHO05D009155 1.0e-69 267.3 235 62.6
Nitab4.5_0002113g0150 Nicotiana tabacum HOM05D007059 ORTHO05D009155 1.4e-69 266.9 186 75.3
Sopen04g004490 Solanum pennellii HOM05D007059 ORTHO05D009155 2.3e-69 266.2 186 75.3
PGSC0003DMG400032539 Solanum tuberosum HOM05D007059 ORTHO05D009155 5.2e-69 265.0 186 75.3
Solyc04g009370.4 Solanum lycopersicum HOM05D007059 ORTHO05D009155 1.2e-68 263.8 186 74.7
VMungo1127G1389 Vigna mungo HOM05D007059 ORTHO05D009155 2.0e-68 263.1 225 64.0
CAN.G624.23 Capsicum annuum HOM05D007059 ORTHO05D009155 7.5e-68 261.2 187 74.3
MBI06_g22349_MAGBIO Magnolia biondii HOM05D007059 ORTHO05D009155 7.5e-68 261.2 228 64.0
Actinidia38411 Actinidia chinensis HOM05D007059 ORTHO05D009155 9.8e-68 260.8 226 64.2
ClCG11G001160 Citrullus lanatus HOM05D007059 ORTHO05D009155 9.8e-68 260.8 237 61.6
MELO3C020030.2 Cucumis melo HOM05D007059 ORTHO05D009155 8.3e-67 257.7 227 62.6
ECA234G4546 Erigeron canadensis HOM05D007059 ORTHO05D009155 1.4e-66 256.9 233 62.2
Cc11_g00200 Coffea canephora HOM05D007059 ORTHO05D009155 4.1e-66 255.4 231 63.6
Sed0015909 Sechium edule HOM05D007059 ORTHO05D009155 7.0e-66 254.6 231 61.0
arahy.Tifrunner.gnm1.ann1.NRJ0Q8 Arachis hypogaea HOM05D007059 ORTHO05D009155 1.6e-65 253.4 220 64.1
arahy.Tifrunner.gnm1.ann1.PC0HA4 Arachis hypogaea HOM05D007059 ORTHO05D009155 1.6e-65 253.4 220 64.1
Duzib251G0490 Durio zibethinus HOM05D007059 ORTHO05D009155 4.6e-65 251.9 231 62.3
Haze_11738 Corylus avellana HOM05D007059 ORTHO05D009155 5.9e-65 251.5 211 66.4
HanXRQChr01g0028541 Helianthus annuus HOM05D007059 ORTHO05D009155 1.0e-64 250.8 229 62.0
Lsat_1_v5_gn_4_26421 Lactuca sativa HOM05D007059 ORTHO05D009155 1.3e-64 250.4 233 61.8
Cpa.g.sc298.2 Carica papaya HOM05D007059 ORTHO05D009155 8.6e-64 247.7 216 64.8
TWI77G0260 Tripterygium wilfordii HOM05D007059 ORTHO05D009155 1.5e-63 246.9 203 67.5
CARHR095430 Cardamine hirsuta HOM05D007059 ORTHO05D009155 1.9e-63 246.5 226 62.4
AL3G33460 Arabidopsis lyrata HOM05D007059 ORTHO05D009155 5.6e-63 245.0 232 61.6
BcaC09g48947 Brassica carinata HOM05D007059 ORTHO05D009155 5.6e-63 245.0 226 60.6
C01p44250 Brassica napus HOM05D007059 ORTHO05D009155 5.6e-63 245.0 226 60.6
BolC1t04385H Brassica oleracea HOM05D007059 ORTHO05D009155 5.6e-63 245.0 226 60.6
Sp3g17910 Schrenkiella parvula HOM05D007059 ORTHO05D009155 9.5e-63 244.2 233 61.8
A01p34850 Brassica napus HOM05D007059 ORTHO05D009155 1.2e-62 243.8 227 60.4
BraA01t03568Z Brassica rapa HOM05D007059 ORTHO05D009155 1.2e-62 243.8 227 60.4
CANSAT35G1437 Cannabis sativa HOM05D007059 ORTHO05D009155 6.2e-62 241.5 146 80.8
Thhalv10021482m.g Eutrema salsugineum HOM05D007059 ORTHO05D009155 1.0e-61 240.7 228 61.0
MSTRG.2053 Avicennia marina HOM05D007059 ORTHO05D009155 1.4e-61 240.4 191 68.1
Carub.0003s1980 Capsella rubella HOM05D007059 ORTHO05D009155 1.8e-61 240.0 230 60.9
AUR62017646 Chenopodium quinoa HOM05D007059 ORTHO05D009155 2.3e-61 239.6 230 57.0
unitig_27.g25281 Utricularia gibba HOM05D007059 ORTHO05D009155 6.8e-61 238.0 161 72.0
Migut.E00704 Erythranthe guttata HOM05D007059 ORTHO05D009155 8.9e-61 237.7 210 63.3
AUR62012864 Chenopodium quinoa HOM05D007059 ORTHO05D009155 1.5e-60 236.9 230 56.1
EL10Ac9g22903 Beta vulgaris HOM05D007059 ORTHO05D009155 7.5e-60 234.6 224 57.6
Aa31LG8G6740 Aethionema arabicum HOM05D007059 ORTHO05D009155 2.2e-59 233.0 129 86.0
ATR0124G031 Amborella trichopoda HOM05D007059 ORTHO05D009155 2.9e-59 232.6 128 84.4
HPP92_002491 Vanilla planifolia HOM05D007059 ORTHO05D009155 9.2e-58 227.6 149 75.8
HPP92_002544 Vanilla planifolia HOM05D007059 ORTHO05D009155 9.2e-58 227.6 149 75.8
Oeu027905.1 Olea europaea HOM05D007059 ORTHO05D009155 5.0e-56 221.9 146 76.7
Zm00001eb259420 Zea mays HOM05D007059 ORTHO05D009155 7.3e-55 218.0 126 81.7
Hund08500 Selenicereus undatus HOM05D007059 ORTHO05D009155 2.3e-53 213.0 215 56.3
THA.LOC104801903 Tarenaya hassleriana HOM05D007059 ORTHO05D009155 7.5e-52 208.0 236 54.2
AagrBONN_evm.TU.Sc2ySwM_344.1288 Anthoceros agrestis HOM05D007059 ORTHO05D009155 8.3e-51 204.5 155 65.2
Pp3c2_14430 Physcomitrium patens HOM05D007059 ORTHO05D009155 8.3e-51 204.5 166 63.9
SMO114G0039 Selaginella moellendorffii HOM05D007059 ORTHO05D009155 1.9e-50 203.4 125 78.4
Pp3c10_16080 Physcomitrium patens HOM05D007059 ORTHO05D009155 2.7e-49 199.5 153 65.4
SGA_v2.0_scaffold88G27235 Striga asiatica HOM05D007059 ORTHO05D009155 1.0e-48 197.6 128 77.3
Migut.E00613 Erythranthe guttata HOM05D007059 ORTHO05D009155 5.1e-48 195.3 192 58.3
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 3.3e-47 192.6 142 71.1
Mapoly0055s0010 Marchantia polymorpha HOM05D007059 ORTHO05D009155 1.2e-46 190.7 149 64.4
Dinv01917 Davidia involucrata HOM05D007059 ORTHO05D009155 7.6e-44 181.4 229 52.0
Actinidia13703 Actinidia chinensis HOM05D007059 ORTHO05D009155 1.1e-42 177.6 170 62.9
PGR031G0357 Punica granatum HOM05D007059 ORTHO05D009155 2.1e-38 163.3 230 46.1
CDE04G0067 Ceratophyllum demersum HOM05D007059 ORTHO05D009155 1.1e-34 151.0 135 63.0
CBR_g48375 Chara braunii HOM05D007059 ORTHO05D009155 1.2e-33 147.5 122 55.7
CsaV3_5G013210 Cucumis sativus L. HOM05D007059 ORTHO05D009155 5.6e-31 138.7 176 48.9
AT3G19900 Arabidopsis thaliana HOM05D007059 ORTHO05D009155 5.1e-24 115.5 159 49.1
Actinidia14379 Actinidia chinensis HOM05D007059 ORTHO05D009155 1.9e-23 113.6 56 94.6
BolC5t33201H Brassica oleracea HOM05D007059 ORTHO05D009155 6.9e-21 105.1 84 66.7
SEGI_27177 Sequoiadendron giganteum HOM05D007059 ORTHO05D009155 1.7e-19 100.5 64 70.3
Cre01.g007050 Chlamydomonas reinhardtii HOM05D007059 ORTHO05D009155 4.2e-18 95.9 115 44.3
SMO364G0884 Selaginella moellendorffii HOM05D007059 ORTHO05D009155 3.9e-16 89.4 67 67.2
Cre03.g197850 Chlamydomonas reinhardtii HOM05D007059 ORTHO05D034487 4.5e-12 75.9 167 28.1
BraA05t21808Z Brassica rapa HOM05D007059 ORTHO05D040342 1.1e-10 71.2 45 77.8
A05p29230 Brassica napus HOM05D007059 ORTHO05D040342 9.3e-10 68.2 45 75.6
MCO14G049 Micromonas commoda HOM05D007059 ORTHO05D009155 2.7e-09 66.6 101 34.7


User provided reference genes

Program Settings