Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1000600 Malus domestica HOM05D006938 ORTHO05D008600 6.0e-112 407.5 207 100.0
MD13G1007500 Malus domestica HOM05D006938 ORTHO05D008600 1.3e-98 363.2 207 89.9
Prupe.1G345500 Prunus persica HOM05D006938 ORTHO05D008600 2.9e-82 308.9 216 76.9
RcHm_v2.0_Chr4g0446461 Rosa chinensis HOM05D006938 ORTHO05D008600 6.7e-71 271.2 207 72.5
FAN12G4276 Fragaria x ananassa HOM05D006938 ORTHO05D008600 2.2e-69 266.2 207 71.5
FvH4_4g36740 Fragaria vesca HOM05D006938 ORTHO05D008600 1.1e-68 263.8 208 71.6
FAN17G2681 Fragaria x ananassa HOM05D006938 ORTHO05D008600 5.9e-67 258.1 217 68.2
QL03p043666 Quercus lobata HOM05D006938 ORTHO05D008600 7.7e-59 231.1 211 61.1
TAR629G2816 Trochodendron aralioides HOM05D006938 ORTHO05D008600 4.7e-56 221.9 213 60.1
Glyma.10G219400 Glycine max HOM05D006938 ORTHO05D008600 4.8e-53 211.8 218 57.3
arahy.Tifrunner.gnm1.ann1.ZPRB1V Arachis hypogaea HOM05D006938 ORTHO05D008600 6.3e-53 211.5 206 54.4
CANSAT64G2234 Cannabis sativa HOM05D006938 ORTHO05D008600 4.1e-52 208.8 210 57.6
Glyma.20G172300 Glycine max HOM05D006938 ORTHO05D008600 9.1e-52 207.6 218 56.9
TPR.G23154 Trifolium pratense HOM05D006938 ORTHO05D008600 4.5e-51 205.3 214 55.1
Gohir.D11G002100 Gossypium hirsutum HOM05D006938 ORTHO05D008600 1.3e-50 203.8 213 53.5
Aqoxy3G04277 Aquilegia oxysepala HOM05D006938 ORTHO05D008600 1.7e-50 203.4 210 56.2
PGR142G2203 Punica granatum HOM05D006938 ORTHO05D008600 1.7e-50 203.4 194 60.3
Duzib084G0622 Durio zibethinus HOM05D006938 ORTHO05D008600 2.9e-50 202.6 211 55.9
Medtr1g097270 Medicago truncatula HOM05D006938 ORTHO05D008600 3.8e-50 202.2 215 54.0
Potri.002G062100 Populus trichocarpa HOM05D006938 ORTHO05D008600 5.0e-50 201.8 212 56.1
Lj5g0002504 Lotus japonicus HOM05D006938 ORTHO05D008600 1.1e-49 200.7 221 54.8
ClCG09G005720 Citrullus lanatus HOM05D006938 ORTHO05D008600 1.9e-49 199.9 210 55.7
Eucgr.G00991 Eucalyptus grandis HOM05D006938 ORTHO05D008600 3.3e-49 199.1 211 55.5
Gohir.A11G002500 Gossypium hirsutum HOM05D006938 ORTHO05D008600 3.3e-49 199.1 213 52.6
Phvul.007G086000 Phaseolus vulgaris HOM05D006938 ORTHO05D008600 3.3e-49 199.1 218 55.0
Thecc.03G060300 Theobroma cacao HOM05D006938 ORTHO05D008600 9.5e-49 197.6 209 56.0
Ciclev10032755m.g Citrus clementina HOM05D006938 ORTHO05D008600 1.6e-48 196.8 212 51.9
PSO017G4971 Papaver somniferum HOM05D006938 ORTHO05D008600 1.6e-48 196.8 208 53.8
Nn4g24932 Nelumbo nucifera HOM05D006938 ORTHO05D008600 1.0e-47 194.1 210 53.3
CsaV3_7G029440 Cucumis sativus L. HOM05D006938 ORTHO05D008600 1.4e-47 193.7 211 54.5
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 1.4e-47 193.7 167 64.7
Dinv17599 Davidia involucrata HOM05D006938 ORTHO05D008600 1.4e-47 193.7 179 59.8
Lalb_Chr03g0035761 Lupinus albus HOM05D006938 ORTHO05D008600 1.4e-47 193.7 205 54.6
CSS0018133 Camellia sinensis var. sinensis HOM05D006938 ORTHO05D008600 3.0e-47 192.6 189 59.3
TWI53G1636 Tripterygium wilfordii HOM05D006938 ORTHO05D008600 3.0e-47 192.6 217 51.2
PSO478G3769 Papaver somniferum HOM05D006938 ORTHO05D008600 4.0e-47 192.2 208 54.3
Psat6g189200 Pisum sativum HOM05D006938 ORTHO05D008600 4.0e-47 192.2 212 55.2
Lj6P721T41 Lonicera japonica HOM05D006938 ORTHO05D008600 5.2e-47 191.8 172 62.2
Hma1.2p1_0232F.1_g097690 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 6.8e-47 191.4 138 69.6
Cfa008713 Carpinus fangiana HOM05D006938 ORTHO05D008600 8.9e-47 191.0 173 59.5
Haze_11723 Corylus avellana HOM05D006938 ORTHO05D008600 1.2e-46 190.7 181 58.0
SGA_v2.0_scaffold25G10864 Striga asiatica HOM05D006938 ORTHO05D008600 1.5e-46 190.3 193 56.0
Gorai.007G003100 Gossypium raimondii HOM05D006938 ORTHO05D008600 2.0e-46 189.9 190 54.7
Peaxi162Scf00363g00087 Petunia axillaris HOM05D006938 ORTHO05D008600 2.0e-46 189.9 120 78.3
Sabra02G0050200 Salix brachista HOM05D006938 ORTHO05D008600 3.4e-46 189.1 145 69.0
Potri.005G199000 Populus trichocarpa HOM05D006938 ORTHO05D008600 4.4e-46 188.7 191 55.5
Sed0026401 Sechium edule HOM05D006938 ORTHO05D008600 4.4e-46 188.7 180 60.0
PGSC0003DMG400019837 Solanum tuberosum HOM05D006938 ORTHO05D008600 4.4e-46 188.7 154 66.9
CiPaw.09G164200 Carya illinoinensis HOM05D006938 ORTHO05D008600 9.8e-46 187.6 139 69.8
CAN.G157.8 Capsicum annuum HOM05D006938 ORTHO05D008600 1.3e-45 187.2 120 76.7
vmacro22268 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 1.3e-45 187.2 179 58.1
Oeu024662.1 Olea europaea HOM05D006938 ORTHO05D008600 1.7e-45 186.8 117 78.6
vmacro22787 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 1.7e-45 186.8 117 79.5
HanXRQChr17g0540771 Helianthus annuus HOM05D006938 ORTHO05D008600 2.2e-45 186.4 209 55.0
Actinidia11174 Actinidia chinensis HOM05D006938 ORTHO05D008600 2.8e-45 186.0 115 79.1
Ca_10639_v3 Cicer arietinum L. HOM05D006938 ORTHO05D008600 2.8e-45 186.0 203 52.7
MELO3C015984.2 Cucumis melo HOM05D006938 ORTHO05D008600 3.7e-45 185.7 180 57.8
Thhalv10005006m.g Eutrema salsugineum HOM05D006938 ORTHO05D008600 3.7e-45 185.7 132 71.2
MBI06_g36504_MAGBIO Magnolia biondii HOM05D006938 ORTHO05D008600 4.9e-45 185.3 114 78.1
Manes.10G035800 Manihot esculenta HOM05D006938 ORTHO05D008600 6.3e-45 184.9 174 58.0
GSVIVG01010180001 Vitis vinifera HOM05D006938 ORTHO05D008600 6.3e-45 184.9 186 57.5
ECA246G5327 Erigeron canadensis HOM05D006938 ORTHO05D008600 8.3e-45 184.5 134 71.6
Ah.01g012920 Amaranthus hybridus HOM05D006938 ORTHO05D008600 1.1e-44 184.1 134 68.7
AUR62017669 Chenopodium quinoa HOM05D006938 ORTHO05D008600 1.4e-44 183.7 182 54.9
AUR62015206 Chenopodium quinoa HOM05D006938 ORTHO05D008600 4.1e-44 182.2 117 75.2
Cc07_g19080 Coffea canephora HOM05D006938 ORTHO05D008600 5.4e-44 181.8 174 58.6
Rhsim06G0126000 Rhododendron simsii HOM05D006938 ORTHO05D008600 5.4e-44 181.8 115 78.3
AL7G45100 Arabidopsis lyrata HOM05D006938 ORTHO05D008600 7.0e-44 181.4 145 64.1
BcaC08g44319 Brassica carinata HOM05D006938 ORTHO05D008600 7.0e-44 181.4 134 68.7
C06p17420 Brassica napus HOM05D006938 ORTHO05D008600 7.0e-44 181.4 134 68.7
BolC6t36937H Brassica oleracea HOM05D006938 ORTHO05D008600 7.0e-44 181.4 134 68.7
Nitab4.5_0000139g0080 Nicotiana tabacum HOM05D006938 ORTHO05D008600 1.2e-43 180.6 120 75.0
Nitab4.5_0002392g0050 Nicotiana tabacum HOM05D006938 ORTHO05D008600 1.6e-43 180.3 117 76.9
A05p16420 Brassica napus HOM05D006938 ORTHO05D008600 2.7e-43 179.5 121 74.4
ATR0618G369 Amborella trichopoda HOM05D006938 ORTHO05D008600 3.5e-43 179.1 126 69.8
BcaB02g08043 Brassica carinata HOM05D006938 ORTHO05D008600 4.5e-43 178.7 121 74.4
Sp7g06080 Schrenkiella parvula HOM05D006938 ORTHO05D008600 4.5e-43 178.7 114 77.2
THA.LOC104805738 Tarenaya hassleriana HOM05D006938 ORTHO05D008600 4.5e-43 178.7 209 51.2
Atru.chr11.1233 Acer truncatum HOM05D006938 ORTHO05D008600 7.8e-43 177.9 207 50.2
Atru.chr11.1321 Acer truncatum HOM05D006938 ORTHO05D008600 7.8e-43 177.9 207 50.2
Lsat_1_v5_gn_3_33800 Lactuca sativa HOM05D006938 ORTHO05D008600 7.8e-43 177.9 107 84.1
Sopen02g005300 Solanum pennellii HOM05D006938 ORTHO05D008600 7.8e-43 177.9 111 78.4
Hund24283 Selenicereus undatus HOM05D006938 ORTHO05D008600 1.0e-42 177.6 109 79.8
SGA_v2.0_scaffold467G52037 Striga asiatica HOM05D006938 ORTHO05D008600 1.0e-42 177.6 108 79.6
Cpa.g.sc51.44 Carica papaya HOM05D006938 ORTHO05D008600 1.7e-42 176.8 112 74.1
Solyc02g021000.3 Solanum lycopersicum HOM05D006938 ORTHO05D008600 1.7e-42 176.8 111 78.4
AT5G36120 Arabidopsis thaliana HOM05D006938 ORTHO05D008600 2.3e-42 176.4 141 63.8
BraA05t20549Z Brassica rapa HOM05D006938 ORTHO05D008600 2.9e-42 176.0 122 73.8
Hma1.2p1_0499F.1_g166850 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 2.9e-42 176.0 112 75.9
RcHm_v2.0_Chr3g0449681 Rosa chinensis HOM05D006938 ORTHO05D008600 6.6e-42 174.9 103 80.6
Sc20g0002200 Simmondsia chinensis HOM05D006938 ORTHO05D008600 6.6e-42 174.9 116 73.3
Migut.I00065 Erythranthe guttata HOM05D006938 ORTHO05D008600 1.5e-41 173.7 104 81.7
Oeu022179.1 Olea europaea HOM05D006938 ORTHO05D008600 4.3e-41 172.2 100 85.0
Aa31LG9G17890 Aethionema arabicum HOM05D006938 ORTHO05D008600 5.6e-41 171.8 121 71.9
Manes.07G111600 Manihot esculenta HOM05D006938 ORTHO05D008600 9.5e-41 171.0 208 51.4
HPP92_002496 Vanilla planifolia HOM05D006938 ORTHO05D008600 2.1e-40 169.9 107 74.8
Carub.0007s3179 Capsella rubella HOM05D006938 ORTHO05D008600 3.6e-40 169.1 130 66.9
HPP92_002538 Vanilla planifolia HOM05D006938 ORTHO05D008600 1.8e-39 166.8 107 73.8
Sc10g0007070 Simmondsia chinensis HOM05D006938 ORTHO05D008600 1.5e-38 163.7 116 70.7
Os01g0966200 Oryza sativa ssp. japonica HOM05D006938 ORTHO05D008600 2.0e-38 163.3 102 79.4
Zm00001eb362370 Zea mays HOM05D006938 ORTHO05D008600 2.9e-37 159.5 102 76.5
Mapoly0101s0070 Marchantia polymorpha HOM05D006938 ORTHO05D008600 7.8e-35 151.4 119 65.5
AagrBONN_evm.TU.Sc2ySwM_344.2773 Anthoceros agrestis HOM05D006938 ORTHO05D008600 3.0e-34 149.4 115 62.6
Pp3c10_19880 Physcomitrium patens HOM05D006938 ORTHO05D008600 6.6e-34 148.3 103 68.0
SEGI_34816 Sequoiadendron giganteum HOM05D006938 ORTHO05D008600 7.3e-33 144.8 106 62.3
CDE07G1356 Ceratophyllum demersum HOM05D002851 ORTHO05D003084 1.8e-31 140.2 91 75.8
MCO16G496 Micromonas commoda HOM05D006938 ORTHO05D008600 4.9e-29 132.1 106 60.4
unitig_21.g20451 Utricularia gibba HOM05D006938 ORTHO05D008600 6.0e-27 125.2 70 84.3
MBI06_g34033_MAGBIO Magnolia biondii HOM05D006938 ORTHO05D008600 3.0e-26 122.9 78 75.6
Peaxi162Scf00818g00021 Petunia axillaris HOM05D006938 ORTHO05D008600 3.6e-24 115.9 63 87.3
Cre01.g052400 Chlamydomonas reinhardtii HOM05D006938 ORTHO05D008600 7.1e-20 101.7 93 51.6
CDE06G1837 Ceratophyllum demersum HOM05D006938 ORTHO05D008600 3.0e-18 96.3 55 81.8
CsaV3_4G025230 Cucumis sativus L. HOM05D006938 ORTHO05D008600 2.1e-16 90.1 62 71.0
EL10Ac9g22924 Beta vulgaris HOM05D006938 ORTHO05D008600 1.8e-15 87.0 44 90.9
PRCOL_00002779 Prasinoderma coloniale HOM05D006938 ORTHO05D008600 1.2e-14 84.3 77 51.9
Sc10g0007050 Simmondsia chinensis HOM05D006938 ORTHO05D008600 2.7e-11 73.2 58 58.6
Migut.I00066 Erythranthe guttata HOM05D006938 ORTHO05D008600 6.6e-10 68.6 44 68.2


User provided reference genes

Program Settings