Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 0.0e+00 1173.7 569 100.0
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 0.0e+00 1156.7 569 98.2
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 0.0e+00 1137.1 569 96.1
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 7.8e-311 1069.7 567 89.2
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 1.9e-309 1065.1 567 88.5
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 2.5e-309 1064.7 573 90.1
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 1.4e-307 1058.9 567 89.1
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 1.5e-306 1055.4 564 87.8
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.2e-305 1051.6 568 89.8
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 2.9e-305 1051.2 567 87.7
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 2.9e-305 1051.2 569 89.5
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 4.9e-305 1050.4 558 88.5
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 8.3e-305 1049.7 567 87.7
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 4.1e-304 1047.3 567 87.7
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 9.2e-304 1046.2 567 87.1
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 9.2e-304 1046.2 567 89.2
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 3.5e-303 1044.3 567 86.8
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 4.6e-303 1043.9 567 86.8
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 6.6e-302 1040.0 567 86.6
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 8.6e-302 1039.6 567 86.2
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 8.6e-302 1039.6 563 87.6
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.1e-301 1039.3 564 87.8
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 1.9e-301 1038.5 563 87.0
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 1.9e-301 1038.5 561 86.8
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 1.9e-301 1038.5 567 87.5
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 1.9e-301 1038.5 563 87.2
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 4.3e-301 1037.3 570 87.2
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 4.3e-301 1037.3 561 87.7
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 4.3e-301 1037.3 563 86.9
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 1.2e-300 1035.8 561 86.6
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 1.0e-299 1032.7 567 86.2
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.4e-299 1032.3 561 87.2
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 1.8e-299 1031.9 567 86.4
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 3.1e-299 1031.2 567 86.6
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 4.0e-299 1030.8 550 88.0
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 8.9e-299 1029.6 567 86.9
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.2e-298 1029.2 567 86.2
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 2.6e-298 1028.1 567 85.7
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 3.4e-298 1027.7 563 86.3
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 3.4e-298 1027.7 567 86.6
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 4.4e-298 1027.3 567 85.5
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 4.4e-298 1027.3 567 85.5
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 5.8e-298 1026.9 567 85.9
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 5.8e-298 1026.9 563 86.3
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 7.5e-298 1026.5 567 84.7
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 7.5e-298 1026.5 561 87.0
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 7.5e-298 1026.5 567 86.4
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 9.8e-298 1026.2 562 85.6
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.3e-297 1025.8 563 86.1
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 1.3e-297 1025.8 565 85.8
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.7e-297 1025.4 565 85.7
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 1.7e-297 1025.4 567 86.1
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.2e-297 1025.0 567 84.3
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 2.9e-297 1024.6 567 85.5
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 6.4e-297 1023.5 567 85.4
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 6.4e-297 1023.5 567 86.4
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 8.3e-297 1023.1 567 86.1
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 3.2e-296 1021.1 567 85.5
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 3.2e-296 1021.1 563 86.3
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 4.1e-296 1020.8 567 84.7
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 7.8e-295 1016.5 567 85.2
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 3.9e-294 1014.2 567 85.2
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 5.0e-294 1013.8 563 85.3
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 1.9e-293 1011.9 563 85.1
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 1.9e-293 1011.9 563 85.1
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 9.5e-293 1009.6 565 83.7
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 9.5e-293 1009.6 552 85.5
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 1.2e-292 1009.2 567 84.7
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 6.2e-292 1006.9 561 84.7
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 5.2e-291 1003.8 566 84.6
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 8.9e-291 1003.0 565 83.2
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 8.9e-291 1003.0 563 84.7
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 8.9e-291 1003.0 565 83.2
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 1.2e-290 1002.7 551 85.8
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.4e-290 1001.1 563 87.9
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 3.7e-289 997.7 556 85.3
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 6.4e-289 996.9 557 85.5
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 8.3e-289 996.5 561 83.8
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 1.9e-288 995.3 567 82.7
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 2.1e-287 991.9 550 84.9
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 1.7e-286 988.8 534 87.1
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.3e-286 988.4 549 84.5
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 3.0e-286 988.0 568 82.4
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 3.9e-286 987.6 564 84.0
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 1.9e-285 985.3 565 83.2
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.9e-285 985.3 564 83.7
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.5e-285 984.9 549 84.3
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 2.1e-284 981.9 565 82.8
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 4.4e-282 974.2 567 82.7
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 2.9e-281 971.5 562 83.3
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 3.8e-281 971.1 564 80.9
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 1.1e-280 969.5 564 82.3
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 1.6e-279 965.7 564 80.0
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.7e-279 964.9 564 80.3
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.3e-278 961.8 564 80.5
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 2.3e-278 961.8 562 82.2
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 5.1e-278 960.7 564 81.7
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 3.3e-277 958.0 567 79.2
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 4.0e-275 951.0 564 80.3
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 1.2e-274 949.5 564 80.3
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 7.6e-274 946.8 564 80.3
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 7.6e-274 946.8 564 80.3
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 7.6e-274 946.8 564 80.3
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 7.6e-274 946.8 564 80.1
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 9.9e-274 946.4 567 78.1
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 1.3e-273 946.0 564 80.0
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 1.3e-273 946.0 564 80.0
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 1.7e-273 945.7 564 80.1
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 3.8e-273 944.5 564 80.1
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 4.9e-273 944.1 564 80.1
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 4.9e-273 944.1 564 79.8
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 4.9e-273 944.1 564 79.3
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 6.4e-273 943.7 564 80.0
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 6.4e-273 943.7 564 79.4
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 8.4e-273 943.3 564 79.4
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 1.9e-272 942.2 564 80.0
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 9.3e-272 939.9 563 78.5
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 1.6e-271 939.1 570 77.2
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 2.1e-271 938.7 564 79.3
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 2.1e-271 938.7 564 79.3
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 2.1e-271 938.7 564 78.9
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 7.8e-271 936.8 570 76.8
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 2.3e-270 935.3 564 79.3
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 2.3e-270 935.3 564 79.1
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 3.3e-269 931.4 570 77.7
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 2.4e-267 925.2 567 76.7
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 1.6e-260 902.5 576 74.5
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 3.2e-256 888.3 567 73.7
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 6.7e-254 880.6 524 79.4
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.5e-253 879.4 565 72.9
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 7.4e-253 877.1 568 74.1
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 1.3e-252 876.3 565 73.8
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 2.8e-252 875.2 568 74.3
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 1.1e-251 873.2 564 74.8
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 5.3e-251 870.9 562 74.2
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 1.7e-249 865.9 557 76.8
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 5.7e-245 850.9 566 71.9
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 5.5e-240 834.3 469 82.1
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 2.5e-237 825.5 564 69.5
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 2.9e-217 758.8 418 85.9
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.1e-211 740.3 425 81.4
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 7.7e-210 734.2 563 65.2
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 2.6e-205 719.2 569 63.4
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 8.0e-191 671.0 373 82.3
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.7e-180 636.7 541 55.8
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 4.6e-170 602.1 329 83.3
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.1e-167 593.2 417 71.2
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 3.1e-166 589.3 488 54.9
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 4.4e-165 585.5 523 52.0
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 3.6e-159 565.8 292 87.7
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.8e-150 537.0 418 58.6
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 7.9e-138 495.0 567 49.0
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 9.6e-136 488.0 567 48.7
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 1.3e-132 477.6 318 71.7
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 4.3e-128 462.6 468 54.9
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 1.6e-82 311.2 213 70.9
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 8.0e-82 308.9 549 37.2
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 6.8e-81 305.8 492 35.4
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 9.8e-64 248.8 197 62.4
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 2.4e-62 244.2 197 61.4
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 1.9e-59 234.6 166 67.5
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 4.9e-55 219.9 119 87.4
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 5.8e-48 196.4 133 72.9
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 4.9e-47 193.4 127 67.7
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 2.4e-46 191.0 128 74.2
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 7.3e-43 179.5 166 58.4
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 2.8e-42 177.6 166 58.4
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 4.7e-42 176.8 166 58.4
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.4e-41 175.3 324 33.6
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 5.3e-41 173.3 166 57.8
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 4.0e-33 147.1 496 26.8
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 6.4e-31 139.8 87 72.4
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 2.4e-30 137.9 94 69.1
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 1.1e-27 129.0 90 65.6
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 1.3e-26 125.6 75 70.7
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 4.8e-26 123.6 213 38.0
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 7.9e-21 106.3 166 42.8
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 3.9e-20 104.0 184 38.0
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 1.2e-16 92.4 103 46.6
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 1.3e-10 72.4 46 65.2
Cc08_g01180 Coffea canephora HOM05D000597 ORTHO05D006307 1.4e-06 58.9 175 27.4
Duzib187G1275 Durio zibethinus HOM05D000597 ORTHO05D006307 4.2e-06 57.4 99 30.3
Psat0s3488g0080 Pisum sativum HOM05D002270 ORTHO05D030496 9.4e-06 56.2 72 50.0


User provided reference genes

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