Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1445500 Malus domestica HOM05D006925 ORTHO05D008830 9.9e-172 606.7 302 100.0
Prupe.1G587400 Prunus persica HOM05D006925 ORTHO05D008830 1.3e-147 526.6 305 88.2
RcHm_v2.0_Chr7g0218321 Rosa chinensis HOM05D006925 ORTHO05D008830 1.4e-138 496.5 302 84.1
FAN18G1352 Fragaria x ananassa HOM05D006925 ORTHO05D008830 4.1e-125 451.8 246 90.2
FvH4_5g27220 Fragaria vesca HOM05D006925 ORTHO05D008830 9.0e-125 450.7 246 89.8
FAN08G3037 Fragaria x ananassa HOM05D006925 ORTHO05D008830 1.5e-124 449.9 243 90.5
Dinv30983 Davidia involucrata HOM05D006925 ORTHO05D008830 2.6e-124 449.1 301 75.7
QL02p103778 Quercus lobata HOM05D006925 ORTHO05D008830 3.9e-120 435.3 285 75.8
Sabra03G0019700 Salix brachista HOM05D006925 ORTHO05D000812 2.5e-119 432.6 291 73.9
GSVIVG01023121001 Vitis vinifera HOM05D006925 ORTHO05D008830 2.2e-118 429.5 275 77.1
Cfa004416 Carpinus fangiana HOM05D006925 ORTHO05D008830 3.7e-118 428.7 255 83.1
TWI14G0460 Tripterygium wilfordii HOM05D006925 ORTHO05D008830 3.7e-118 428.7 277 77.3
Potri.003G046600 Populus trichocarpa HOM05D006925 ORTHO05D008830 6.3e-118 427.9 291 73.2
CANSAT01G0563 Cannabis sativa HOM05D006925 ORTHO05D008830 1.8e-117 426.4 268 77.6
Gorai.011G089700 Gossypium raimondii HOM05D006925 ORTHO05D008830 3.1e-117 425.6 264 79.9
Duzib160G0166 Durio zibethinus HOM05D006925 ORTHO05D008830 4.1e-117 425.2 284 73.9
Gohir.D10G082800 Gossypium hirsutum HOM05D006925 ORTHO05D008830 2.0e-116 422.9 264 79.5
MSTRG.16455 Avicennia marina HOM05D006925 ORTHO05D008830 2.2e-115 419.5 283 73.5
Haze_09956 Corylus avellana HOM05D006925 ORTHO05D008830 3.8e-115 418.7 298 72.8
FAN13G1230 Fragaria x ananassa HOM05D006925 ORTHO05D008830 3.8e-115 418.7 264 80.7
CSS0028149 Camellia sinensis var. sinensis HOM05D006925 ORTHO05D008830 8.5e-115 417.5 289 73.0
CiPaw.05G000400 Carya illinoinensis HOM05D006925 ORTHO05D008830 1.9e-114 416.4 266 77.8
Hma1.2p1_0157F.1_g069250 Hydrangea macrophylla HOM05D006925 ORTHO05D008830 1.9e-114 416.4 280 74.3
THA.LOC104824095 Tarenaya hassleriana HOM05D006925 ORTHO05D008830 3.2e-114 415.6 248 79.0
CSS0004280 Camellia sinensis var. sinensis HOM05D006925 ORTHO05D008830 7.2e-114 414.5 256 79.3
Cc02_g23820 Coffea canephora HOM05D006925 ORTHO05D008830 1.6e-113 413.3 285 72.6
ClCG10G007640 Citrullus lanatus HOM05D006925 ORTHO05D008830 2.1e-113 412.9 247 80.2
HanXRQChr03g0071141 Helianthus annuus HOM05D006925 ORTHO05D008830 2.1e-113 412.9 277 74.4
Glyma.07G271000 Glycine max HOM05D006925 ORTHO05D008830 2.7e-113 412.5 276 74.3
PGR042G2053 Punica granatum HOM05D006925 ORTHO05D008830 2.7e-113 412.5 272 75.0
VMungo1215G1006 Vigna mungo HOM05D006925 ORTHO05D008830 2.7e-113 412.5 274 75.2
COL.COLO4_31098 Corchorus olitorius HOM05D006925 ORTHO05D008830 3.6e-113 412.1 265 77.4
PGSC0003DMG400003436 Solanum tuberosum HOM05D006925 ORTHO05D008830 3.6e-113 412.1 285 71.9
arahy.Tifrunner.gnm1.ann1.EDE5FN Arachis hypogaea HOM05D006925 ORTHO05D008830 4.7e-113 411.8 275 76.0
Nitab4.5_0002274g0030 Nicotiana tabacum HOM05D006925 ORTHO05D008830 7.9e-113 411.0 259 77.6
Sopen10g013620 Solanum pennellii HOM05D006925 ORTHO05D008830 7.9e-113 411.0 285 71.9
Migut.B00701 Erythranthe guttata HOM05D006925 ORTHO05D008830 1.0e-112 410.6 254 79.1
Ah.02g128580 Amaranthus hybridus HOM05D006925 ORTHO05D008830 3.9e-112 408.7 281 71.2
PSO210G4845 Papaver somniferum HOM05D006925 ORTHO05D008830 3.9e-112 408.7 276 72.8
arahy.Tifrunner.gnm1.ann1.MTF64G Arachis hypogaea HOM05D006925 ORTHO05D008830 5.1e-112 408.3 275 75.6
Solyc10g044840.2 Solanum lycopersicum HOM05D006925 ORTHO05D008830 5.1e-112 408.3 284 71.5
MBI06_g17054_MAGBIO Magnolia biondii HOM05D006925 ORTHO05D008830 6.7e-112 407.9 273 72.9
ECA248G0237 Erigeron canadensis HOM05D002199 ORTHO05D007829 1.5e-111 406.8 253 79.8
CAN.G402.4 Capsicum annuum HOM05D006925 ORTHO05D008830 7.4e-111 404.4 282 71.6
Lalb_Chr07g0176851 Lupinus albus HOM05D006925 ORTHO05D008830 2.2e-110 402.9 275 73.1
Lj4g0023352 Lotus japonicus HOM05D006925 ORTHO05D008830 3.7e-110 402.1 253 79.8
CsaV3_3G006780 Cucumis sativus L. HOM05D006925 ORTHO05D008830 6.3e-110 401.4 246 78.5
AL5G11640 Arabidopsis lyrata HOM05D006925 ORTHO05D008830 8.2e-110 401.0 273 73.3
BcaC06g31233 Brassica carinata HOM05D006925 ORTHO05D008830 1.1e-109 400.6 250 78.4
Peaxi162Scf00055g00018 Petunia axillaris HOM05D006925 ORTHO05D008830 3.1e-109 399.1 281 71.2
Sp2g13680 Schrenkiella parvula HOM05D006925 ORTHO05D008830 3.1e-109 399.1 273 73.3
unitig_8.g4519 Utricularia gibba HOM05D006925 ORTHO05D008830 3.1e-109 399.1 243 76.5
ATR1089G139 Amborella trichopoda HOM05D006925 ORTHO05D008830 1.2e-108 397.1 247 75.3
Actinidia00135 Actinidia chinensis HOM05D006925 ORTHO05D008830 1.5e-108 396.7 254 77.2
A06p43640 Brassica napus HOM05D006925 ORTHO05D008830 1.5e-108 396.7 277 72.6
BraA06t27246Z Brassica rapa HOM05D006925 ORTHO05D008830 1.5e-108 396.7 277 72.6
Aqoxy5G01835 Aquilegia oxysepala HOM05D006925 ORTHO05D008830 2.0e-108 396.4 293 67.9
DCAR_004828 Daucus carota HOM05D006925 ORTHO05D008830 2.0e-108 396.4 273 71.1
BcaC06g34054 Brassica carinata HOM05D006925 ORTHO05D008830 5.9e-108 394.8 277 72.2
C07p33220 Brassica napus HOM05D006925 ORTHO05D008830 5.9e-108 394.8 277 72.2
BolC7t43833H Brassica oleracea HOM05D006925 ORTHO05D008830 5.9e-108 394.8 277 72.2
CDE05G0936 Ceratophyllum demersum HOM05D006925 ORTHO05D008830 7.7e-108 394.4 246 74.8
Nn5g27113 Nelumbo nucifera HOM05D006925 ORTHO05D008830 8.0e-105 384.4 228 80.7
Aa31LG2G7670 Aethionema arabicum HOM05D006925 ORTHO05D008830 9.7e-103 377.5 273 70.7
Gohir.A10G068400 Gossypium hirsutum HOM05D006925 ORTHO05D008830 9.1e-101 370.9 231 79.2
Medtr4g134410 Medicago truncatula HOM05D006925 ORTHO05D008830 1.7e-99 366.7 253 72.7
Carub.0005s0146 Capsella rubella HOM05D006925 ORTHO05D008830 1.4e-96 357.1 219 79.9
HPP92_001204 Vanilla planifolia HOM05D006925 ORTHO05D008830 2.3e-96 356.3 250 67.2
Thecc.06G062200 Theobroma cacao HOM05D006925 ORTHO05D008830 1.3e-94 350.5 237 73.4
SGA_v2.0_scaffold254G45226 Striga asiatica HOM05D006925 ORTHO05D008830 3.7e-94 349.0 341 54.3
Nitab4.5_0000288g0050 Nicotiana tabacum HOM05D006925 ORTHO05D008830 6.3e-94 348.2 259 68.7
Eucgr.G00053 Eucalyptus grandis HOM05D006925 ORTHO05D008830 3.5e-92 342.4 215 77.7
Lsat_1_v5_gn_7_69720 Lactuca sativa HOM05D006925 ORTHO05D008830 4.5e-92 342.0 246 71.1
Sc03g0005610 Simmondsia chinensis HOM05D006925 ORTHO05D008830 8.5e-91 337.8 222 75.2
Phvul.003G090400 Phaseolus vulgaris HOM05D006925 ORTHO05D008830 1.1e-90 337.4 225 73.3
Manes.06G015100 Manihot esculenta HOM05D006925 ORTHO05D008830 1.6e-89 333.6 201 79.6
Thhalv10004663m.g Eutrema salsugineum HOM05D006925 ORTHO05D008830 1.8e-88 330.1 226 69.9
Psat4g001760 Pisum sativum HOM05D006925 ORTHO05D008830 3.7e-86 322.4 252 63.1
Ca_13518_v3 Cicer arietinum L. HOM05D006925 ORTHO05D008830 4.9e-86 322.0 213 73.7
Sed0012673 Sechium edule HOM05D006925 ORTHO05D008830 3.1e-85 319.3 197 77.7
AUR62032491 Chenopodium quinoa HOM05D006925 ORTHO05D008830 4.2e-82 308.9 194 74.2
EL10Ac6g13952 Beta vulgaris HOM05D006925 ORTHO05D008830 3.6e-81 305.8 287 55.7
Pp3c15_4340 Physcomitrium patens HOM05D006925 ORTHO05D008830 6.1e-81 305.1 287 53.0
Pp3c9_8480 Physcomitrium patens HOM05D006925 ORTHO05D008830 3.0e-80 302.8 268 56.3
Mapoly0001s0380 Marchantia polymorpha HOM05D006925 ORTHO05D008830 9.8e-79 297.7 252 58.7
Lj5A307T31 Lonicera japonica HOM05D006925 ORTHO05D008830 2.9e-78 296.2 262 58.4
Hund15314 Selenicereus undatus HOM05D006925 ORTHO05D008830 3.5e-76 289.3 188 75.5
AUR62040119 Chenopodium quinoa HOM05D006925 ORTHO05D008830 6.6e-75 285.0 307 52.8
MELO3C016443.2 Cucumis melo HOM05D006925 ORTHO05D008830 5.6e-74 282.0 166 80.7
TPR.G5931 Trifolium pratense HOM05D006925 ORTHO05D008830 6.2e-73 278.5 228 61.8
TAR628G1169 Trochodendron aralioides HOM05D006925 ORTHO05D008830 3.2e-69 266.2 157 78.3
SMO358G0233 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 4.6e-68 262.3 246 53.3
vmacro01630 Vaccinium macrocarpon HOM05D006925 ORTHO05D008830 2.3e-67 260.0 212 62.3
CARHR144990 Cardamine hirsuta HOM05D006925 ORTHO05D008830 5.0e-67 258.8 186 68.3
AagrBONN_evm.TU.Sc2ySwM_369.585 Anthoceros agrestis HOM05D006925 ORTHO05D008830 3.1e-64 249.6 213 56.8
Zm00001eb064090 Zea mays HOM05D006925 ORTHO05D008830 3.1e-64 249.6 180 65.6
AT2G02410 Arabidopsis thaliana HOM05D006925 ORTHO05D008830 1.7e-62 243.8 210 60.5
SEGI_06138 Sequoiadendron giganteum HOM05D006925 ORTHO05D008830 3.2e-61 239.6 248 52.0
Sabra03G0019900 Salix brachista HOM05D006925 ORTHO05D008830 7.3e-50 201.8 163 63.8
Ciclev10003645m.g Citrus clementina HOM05D006925 ORTHO05D008830 2.0e-47 193.7 164 64.6
Rhsim11G0114700 Rhododendron simsii HOM05D006925 ORTHO05D008830 1.3e-43 181.0 251 43.0
Glyma.17G002900 Glycine max HOM05D006925 ORTHO05D008830 3.2e-37 159.8 93 84.9
AL5G11650 Arabidopsis lyrata HOM05D006925 ORTHO05D008830 7.4e-34 148.7 92 80.4
Os03g0843200 Oryza sativa ssp. japonica HOM05D006925 ORTHO05D008830 1.1e-29 134.8 106 62.3
SMO201G0205 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 8.1e-25 118.6 98 52.0
TAR628G1563 Trochodendron aralioides HOM05D006925 ORTHO05D008830 2.5e-21 107.1 56 87.5
SEGI_30664 Sequoiadendron giganteum HOM05D006925 ORTHO05D008830 4.6e-20 102.8 117 50.4
CBR_g49407 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-19 101.3 124 46.8
Oeu016657.1 Olea europaea HOM05D006925 ORTHO05D008830 6.7e-19 99.0 59 83.1
Oeu016658.1 Olea europaea HOM05D006925 ORTHO05D008830 2.8e-17 93.6 96 50.0
SMO199G0001 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 1.1e-16 91.7 98 45.9
PRCOL_00002508 Prasinoderma coloniale HOM05D006925 ORTHO05D008830 6.5e-14 82.4 216 30.6
Glyma.20G064100 Glycine max HOM05D006925 ORTHO05D008830 3.5e-12 76.6 41 78.0
EL10Ac6g13953 Beta vulgaris HOM05D006925 ORTHO05D008830 1.0e-11 75.1 52 71.2
CBR_g46374 Chara braunii HOM05D000019 ORTHO05D000353 3.9e-11 73.2 47 66.0
Ciclev10003790m.g Citrus clementina HOM05D006925 ORTHO05D008830 1.2e-07 61.6 36 88.9
vmacro01629 Vaccinium macrocarpon HOM05D006925 ORTHO05D008830 1.7e-06 57.8 55 52.7


User provided reference genes

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