Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 2.4e-57 225.3 116 100.0
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 7.7e-40 167.2 97 90.7
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 3.0e-36 155.2 109 77.1
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 3.0e-36 155.2 109 77.1
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 3.0e-36 155.2 109 77.1
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.1e-35 153.3 84 90.5
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 2.6e-35 152.1 80 95.0
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 5.7e-35 151.0 81 95.1
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 5.7e-35 151.0 79 96.2
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 9.7e-35 150.2 80 93.8
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 9.7e-35 150.2 80 93.8
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 1.7e-34 149.4 79 94.9
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 2.2e-34 149.1 80 92.5
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 2.2e-34 149.1 77 97.4
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 2.8e-34 148.7 79 94.9
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 2.8e-34 148.7 77 96.1
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 2.8e-34 148.7 77 96.1
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 4.8e-34 147.9 77 96.1
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 4.8e-34 147.9 77 96.1
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 4.8e-34 147.9 77 96.1
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 6.3e-34 147.5 97 79.4
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 6.3e-34 147.5 77 96.1
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 6.3e-34 147.5 77 96.1
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 6.3e-34 147.5 77 96.1
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 6.3e-34 147.5 77 96.1
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 6.3e-34 147.5 79 92.4
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 6.3e-34 147.5 77 94.8
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 2.4e-33 145.6 81 87.7
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 2.4e-33 145.6 81 87.7
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 2.4e-33 145.6 79 91.1
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 2.4e-33 145.6 79 91.1
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 2.4e-33 145.6 77 93.5
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 2.4e-33 145.6 77 93.5
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 2.4e-33 145.6 81 90.1
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 3.1e-33 145.2 82 89.0
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 3.1e-33 145.2 77 93.5
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 3.1e-33 145.2 86 83.7
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 3.1e-33 145.2 77 93.5
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 3.1e-33 145.2 103 75.7
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 4.1e-33 144.8 82 87.8
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 4.1e-33 144.8 82 87.8
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 4.1e-33 144.8 77 92.2
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 4.1e-33 144.8 77 92.2
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 4.1e-33 144.8 75 97.3
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 4.1e-33 144.8 77 92.2
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 4.1e-33 144.8 79 91.1
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 5.3e-33 144.4 79 89.9
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 5.3e-33 144.4 79 89.9
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 5.3e-33 144.4 99 75.8
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 7.0e-33 144.1 77 90.9
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 7.0e-33 144.1 77 90.9
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 7.0e-33 144.1 77 92.2
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 9.1e-33 143.7 77 90.9
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 9.1e-33 143.7 77 90.9
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 9.1e-33 143.7 77 90.9
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 9.1e-33 143.7 77 90.9
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 9.1e-33 143.7 81 87.7
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 9.1e-33 143.7 82 87.8
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 9.1e-33 143.7 77 90.9
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 9.1e-33 143.7 77 90.9
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 9.1e-33 143.7 77 90.9
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 1.2e-32 143.3 77 93.5
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.2e-32 143.3 77 92.2
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 1.2e-32 143.3 75 96.0
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 3.5e-32 141.7 77 92.2
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 4.5e-32 141.4 77 89.6
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 5.9e-32 141.0 77 89.6
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 5.9e-32 141.0 129 66.7
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 7.7e-32 140.6 77 89.6
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 1.0e-31 140.2 81 85.2
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.3e-31 139.8 77 90.9
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 1.3e-31 139.8 81 85.2
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 1.7e-31 139.4 93 79.6
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 1.7e-31 139.4 77 89.6
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 2.9e-31 138.7 79 87.3
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 3.8e-31 138.3 82 81.7
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 3.8e-31 138.3 112 67.0
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 3.8e-31 138.3 84 83.3
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 5.0e-31 137.9 101 70.3
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 5.0e-31 137.9 77 88.3
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 5.0e-31 137.9 78 91.0
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 6.5e-31 137.5 81 85.2
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 8.5e-31 137.1 84 81.0
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 8.5e-31 137.1 77 88.3
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 1.1e-30 136.7 77 87.0
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 1.1e-30 136.7 87 79.3
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 1.1e-30 136.7 87 79.3
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 1.1e-30 136.7 77 87.0
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.5e-30 136.3 77 85.7
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 1.5e-30 136.3 79 84.8
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 1.5e-30 136.3 77 83.1
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 3.2e-30 135.2 77 84.4
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 5.5e-30 134.4 77 84.4
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 5.5e-30 134.4 77 84.4
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 5.5e-30 134.4 77 87.0
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 7.2e-30 134.0 77 87.0
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 9.4e-30 133.7 78 85.9
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 1.2e-29 133.3 73 87.7
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 1.6e-29 132.9 75 88.0
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 2.1e-29 132.5 78 84.6
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 2.7e-29 132.1 77 84.4
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 2.7e-29 132.1 78 84.6
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 2.7e-29 132.1 78 84.6
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 3.6e-29 131.7 80 81.2
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 3.6e-29 131.7 71 91.5
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 3.6e-29 131.7 77 80.5
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 4.7e-29 131.3 100 68.0
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 6.1e-29 131.0 71 91.5
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 1.0e-28 130.2 77 83.1
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 1.8e-28 129.4 76 82.9
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 1.8e-28 129.4 77 83.1
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 1.8e-28 129.4 77 83.1
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 2.3e-28 129.0 77 79.2
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 3.0e-28 128.6 80 78.8
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 3.9e-28 128.3 96 70.8
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.1e-27 126.7 99 70.7
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 1.1e-27 126.7 99 70.7
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 2.6e-27 125.6 77 76.6
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 2.6e-27 125.6 78 80.8
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 3.3e-27 125.2 80 78.8
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 1.1e-25 120.2 77 70.1
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 1.1e-25 120.2 93 64.5
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 1.4e-25 119.8 77 68.8
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 2.4e-25 119.0 70 81.4
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 5.3e-25 117.9 77 67.5
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 5.3e-25 117.9 85 72.9
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 7.7e-24 114.0 105 61.0
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 7.2e-22 107.5 56 94.6
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 1.2e-21 106.7 57 91.2
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 3.6e-21 105.1 57 89.5
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 4.0e-20 101.7 71 71.8
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 5.2e-20 101.3 55 87.3
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 8.8e-20 100.5 75 58.7
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 1.2e-19 100.1 70 60.0
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 9.7e-19 97.1 97 58.8
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 1.2e-16 90.1 84 52.4
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 4.5e-16 88.2 51 78.4
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 5.0e-15 84.7 45 88.9
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 1.2e-13 80.1 99 44.4
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 4.0e-12 75.1 42 81.0
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 6.3e-10 67.8 81 50.6
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 8.3e-10 67.4 78 44.9
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 7.7e-08 60.8 29 100.0


User provided reference genes

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