Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1433100 Malus domestica HOM05D000803 ORTHO05D009288 6.1e-68 260.8 139 100.0
Prupe.1G070700 Prunus persica HOM05D000803 ORTHO05D009288 1.3e-30 136.7 110 68.2
RcHm_v2.0_Chr4g0398691 Rosa chinensis HOM05D000803 ORTHO05D009288 6.8e-27 124.4 112 64.3
FvH4_4g06760 Fragaria vesca HOM05D000803 ORTHO05D009288 3.4e-26 122.1 105 66.7
FAN12G0291 Fragaria x ananassa HOM05D000803 ORTHO05D009288 3.4e-26 122.1 105 66.7
FAN22G0075 Fragaria x ananassa HOM05D000803 ORTHO05D009288 7.6e-26 120.9 105 65.7
FAN07G2540 Fragaria x ananassa HOM05D000803 ORTHO05D009288 4.9e-25 118.2 105 65.7
Cfa008764 Carpinus fangiana HOM05D000803 ORTHO05D009288 8.9e-19 97.4 104 58.7
Haze_11775 Corylus avellana HOM05D000803 ORTHO05D009288 3.4e-18 95.5 104 59.6
Duzib052G0208 Durio zibethinus HOM05D000803 ORTHO05D009288 1.4e-16 90.1 113 50.4
Duzib132G0129 Durio zibethinus HOM05D000803 ORTHO05D009288 2.4e-16 89.4 105 55.2
Potri.007G074000 Populus trichocarpa HOM05D000803 ORTHO05D009288 3.2e-16 89.0 105 55.2
Gohir.A04G109000 Gossypium hirsutum HOM05D000803 ORTHO05D009288 5.4e-16 88.2 113 47.8
Gohir.D04G148500 Gossypium hirsutum HOM05D000803 ORTHO05D009288 5.4e-16 88.2 114 47.4
Gorai.012G134800 Gossypium raimondii HOM05D000803 ORTHO05D009288 5.4e-16 88.2 113 47.8
PGR044G0351 Punica granatum HOM05D000803 ORTHO05D009288 5.4e-16 88.2 114 49.1
CiPaw.05G170800 Carya illinoinensis HOM05D000803 ORTHO05D009288 1.6e-15 86.7 107 57.0
Phvul.007G015500 Phaseolus vulgaris HOM05D000803 ORTHO05D009288 1.6e-15 86.7 116 45.7
Glyma.10G285000 Glycine max HOM05D000803 ORTHO05D009288 2.1e-15 86.3 116 47.4
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 3.5e-15 85.5 112 47.3
Psat6g233480 Pisum sativum HOM05D000803 ORTHO05D009288 6.0e-15 84.7 109 51.4
Medtr1g114290 Medicago truncatula HOM05D000803 ORTHO05D009288 7.8e-15 84.3 72 62.5
Sabra07G0061800 Salix brachista HOM05D000803 ORTHO05D009288 1.0e-14 84.0 105 51.4
Thecc.02G157100 Theobroma cacao HOM05D000803 ORTHO05D009288 1.3e-14 83.6 114 51.8
CSS0035072 Camellia sinensis var. sinensis HOM05D000803 ORTHO05D009288 1.7e-14 83.2 102 50.0
CSS0035181 Camellia sinensis var. sinensis HOM05D000803 ORTHO05D009288 2.3e-14 82.8 102 50.0
VMungo0720G1024 Vigna mungo HOM05D000803 ORTHO05D009288 2.3e-14 82.8 102 47.1
TPR.G4141 Trifolium pratense HOM05D000803 ORTHO05D009288 3.0e-14 82.4 58 67.2
Atru.chr11.1152 Acer truncatum HOM05D000803 ORTHO05D009288 3.9e-14 82.0 67 62.7
Glyma.20G104000 Glycine max HOM05D000803 ORTHO05D009288 3.9e-14 82.0 59 64.4
vmacro15984 Vaccinium macrocarpon HOM05D000803 ORTHO05D009288 3.9e-14 82.0 119 44.5
Eucgr.J00880 Eucalyptus grandis HOM05D000803 ORTHO05D009288 5.1e-14 81.6 106 49.1
Lj5g0005958 Lotus japonicus HOM05D000803 ORTHO05D009288 5.1e-14 81.6 114 44.7
arahy.Tifrunner.gnm1.ann1.7N4CEX Arachis hypogaea HOM05D000803 ORTHO05D009288 6.6e-14 81.3 110 49.1
CANSAT78G0634 Cannabis sativa HOM05D000803 ORTHO05D009288 6.6e-14 81.3 114 45.6
COL.COLO4_33073 Corchorus olitorius HOM05D000803 ORTHO05D009288 6.6e-14 81.3 114 50.9
Rhsim09G0069900 Rhododendron simsii HOM05D000803 ORTHO05D009288 8.7e-14 80.9 110 46.4
RhsimUnG0173800 Rhododendron simsii HOM05D000803 ORTHO05D009288 8.7e-14 80.9 110 46.4
Lalb_Chr02g0143601 Lupinus albus HOM05D000803 ORTHO05D009288 1.5e-13 80.1 103 45.6
Actinidia04326 Actinidia chinensis HOM05D000803 ORTHO05D009288 2.5e-13 79.3 97 50.5
arahy.Tifrunner.gnm1.ann1.NS7DLW Arachis hypogaea HOM05D000803 ORTHO05D009288 2.5e-13 79.3 112 49.1
Dinv17639 Davidia involucrata HOM05D000803 ORTHO05D009288 3.3e-13 79.0 117 45.3
Ciclev10032824m.g Citrus clementina HOM05D000803 ORTHO05D009288 9.6e-13 77.4 109 41.3
TWI74G0120 Tripterygium wilfordii HOM05D000803 ORTHO05D009288 2.1e-12 76.3 49 67.3
DCAR_002593 Daucus carota HOM05D000803 ORTHO05D009288 2.8e-12 75.9 104 49.0
Nn3g18624 Nelumbo nucifera HOM05D000803 ORTHO05D009288 2.8e-12 75.9 107 45.8
THA.LOC104826518 Tarenaya hassleriana HOM05D000803 ORTHO05D009288 3.6e-12 75.5 112 45.5
Peaxi162Scf00021g02221 Petunia axillaris HOM05D000803 ORTHO05D009288 6.2e-12 74.7 104 47.1
Sopen01g003770 Solanum pennellii HOM05D000803 ORTHO05D009288 8.1e-12 74.3 95 49.5
PGSC0003DMG400016361 Solanum tuberosum HOM05D000803 ORTHO05D009288 8.1e-12 74.3 48 70.8
SGA_v2.0_scaffold306G48029 Striga asiatica HOM05D000803 ORTHO05D009288 8.1e-12 74.3 108 44.4
TAR622G1240 Trochodendron aralioides HOM05D000803 ORTHO05D009288 8.1e-12 74.3 107 45.8
AL851U10010 Arabidopsis lyrata HOM05D008385 ORTHO05D009288 1.1e-11 73.9 111 40.5
arahy.Tifrunner.gnm1.ann1.2X0IV6 Arachis hypogaea HOM05D000803 ORTHO05D009288 1.1e-11 73.9 41 80.5
Aqoxy7G01361 Aquilegia oxysepala HOM05D000803 ORTHO05D009288 1.4e-11 73.6 101 38.6
QL03p046068 Quercus lobata HOM05D000803 ORTHO05D009288 1.4e-11 73.6 50 68.0
QL03p046129 Quercus lobata HOM05D000803 ORTHO05D009288 1.4e-11 73.6 50 68.0
arahy.Tifrunner.gnm1.ann1.2L9GNP Arachis hypogaea HOM05D000803 ORTHO05D009288 2.4e-11 72.8 44 75.0
MSTRG.13680 Avicennia marina HOM05D000803 ORTHO05D009288 2.4e-11 72.8 49 65.3
AL1G57960 Arabidopsis lyrata HOM05D000803 ORTHO05D009288 3.1e-11 72.4 110 40.0
ECA246G5126 Erigeron canadensis HOM05D000001 ORTHO05D000003 3.1e-11 72.4 44 68.2
Nitab4.5_0002387g0050 Nicotiana tabacum HOM05D000803 ORTHO05D009288 3.1e-11 72.4 114 43.0
Solyc01g008250.3 Solanum lycopersicum HOM05D000803 ORTHO05D009288 3.1e-11 72.4 95 48.4
Lsat_1_v5_gn_3_36620 Lactuca sativa HOM05D000803 ORTHO05D009288 4.0e-11 72.0 99 44.4
Thhalv10012400m.g Eutrema salsugineum HOM05D000803 ORTHO05D009288 5.3e-11 71.6 115 41.7
Sp1g37160 Schrenkiella parvula HOM05D000803 ORTHO05D009288 5.3e-11 71.6 114 40.4
Cc00_g16790 Coffea canephora HOM05D000803 ORTHO05D009288 6.9e-11 71.2 111 42.3
Nitab4.5_0000069g0180 Nicotiana tabacum HOM05D000803 ORTHO05D009288 6.9e-11 71.2 111 41.4
SalBow2G0636 Salvia bowleyana HOM05D000803 ORTHO05D009288 6.9e-11 71.2 128 41.4
Lj3C848G3 Lonicera japonica HOM05D007202 ORTHO05D009125 9.0e-11 70.9 111 47.7
Cpa.g.c31520 Carica papaya HOM05D000803 ORTHO05D009288 1.2e-10 70.5 92 46.7
CARHR039580 Cardamine hirsuta HOM05D000803 ORTHO05D009288 1.5e-10 70.1 102 46.1
arahy.Tifrunner.gnm1.ann1.6Y22KH Arachis hypogaea HOM05D000803 ORTHO05D009288 2.6e-10 69.3 91 46.2
CAN.G282.48 Capsicum annuum HOM05D000803 ORTHO05D009288 4.4e-10 68.6 108 41.7
Sc02g0004820 Simmondsia chinensis HOM05D000803 ORTHO05D009288 4.4e-10 68.6 47 63.8
CDE04G3619 Ceratophyllum demersum HOM05D000803 ORTHO05D009288 9.9e-10 67.4 41 68.3
Carub.0001s3942 Capsella rubella HOM05D000803 ORTHO05D009288 1.7e-09 66.6 110 42.7
CDE02G1801 Ceratophyllum demersum HOM05D000803 ORTHO05D009288 1.7e-09 66.6 41 68.3
Oeu006340.1 Olea europaea HOM05D000803 ORTHO05D009288 2.2e-09 66.2 97 41.2
BolC6t35646H Brassica oleracea HOM05D000803 ORTHO05D009288 2.9e-09 65.9 104 38.5
C06p05410 Brassica napus HOM05D000803 ORTHO05D009288 3.8e-09 65.5 112 36.6
Aa31LG10G3930 Aethionema arabicum HOM05D000803 ORTHO05D009288 4.9e-09 65.1 109 43.1
A06p03220 Brassica napus HOM05D000803 ORTHO05D009288 4.9e-09 65.1 113 38.9
MBI06_g27502_MAGBIO Magnolia biondii HOM05D000803 ORTHO05D009288 4.9e-09 65.1 54 50.0
Os04g0676100 Oryza sativa ssp. japonica HOM05D000803 ORTHO05D009288 4.9e-09 65.1 57 45.6
AT1G50320 Arabidopsis thaliana HOM05D000803 ORTHO05D009288 8.4e-09 64.3 103 43.7
BraA06t23533Z Brassica rapa HOM05D000803 ORTHO05D009288 8.4e-09 64.3 114 38.6
ATR0618G274 Amborella trichopoda HOM05D000803 ORTHO05D009288 1.4e-08 63.5 44 52.3
PSO063G3598 Papaver somniferum HOM05D000803 ORTHO05D009288 2.4e-08 62.8 107 32.7
Migut.O00873 Erythranthe guttata HOM05D000803 ORTHO05D009288 4.2e-08 62.0 105 42.9
Migut.E00687 Erythranthe guttata HOM05D000803 ORTHO05D009288 5.4e-08 61.6 104 40.4
Mapoly0022s0050 Marchantia polymorpha HOM05D000803 ORTHO05D009288 1.6e-07 60.1 41 58.5
Nitab4.5_0003688g0090 Nicotiana tabacum HOM05D000803 ORTHO05D001162 2.7e-07 59.3 106 34.9
PSO782G1772 Papaver somniferum HOM05D000803 ORTHO05D009288 2.7e-07 59.3 95 37.9
Zm00001eb433660 Zea mays HOM05D000803 ORTHO05D009288 6.0e-07 58.2 107 34.6
Rhsim11G0077200 Rhododendron simsii HOM05D000803 ORTHO05D001162 7.9e-07 57.8 82 36.6
SEGI_04482 Sequoiadendron giganteum HOM05D000803 ORTHO05D009288 7.9e-07 57.8 51 41.2
ATR0584G027 Amborella trichopoda HOM05D000803 ORTHO05D001162 1.0e-06 57.4 52 44.2
arahy.Tifrunner.gnm1.ann1.WT2SCQ Arachis hypogaea HOM05D000803 ORTHO05D001162 1.0e-06 57.4 120 37.5
Ah.05g169330 Amaranthus hybridus HOM05D000803 ORTHO05D001162 1.3e-06 57.0 110 33.6
AagrBONN_evm.TU.Sc2ySwM_117.4096 Anthoceros agrestis HOM05D000803 ORTHO05D009288 1.3e-06 57.0 49 51.0
EL10Ac1g01445 Beta vulgaris HOM05D000803 ORTHO05D001162 1.3e-06 57.0 64 40.6
AUR62013476 Chenopodium quinoa HOM05D000803 ORTHO05D001162 1.3e-06 57.0 96 34.4
Zm00001eb066320 Zea mays HOM05D000803 ORTHO05D009288 1.7e-06 56.6 107 32.7
CANSAT25G2413 Cannabis sativa HOM05D000803 ORTHO05D001162 2.3e-06 56.2 54 42.6
AUR62026795 Chenopodium quinoa HOM05D000803 ORTHO05D001162 3.0e-06 55.8 111 31.5
AUR62034259 Chenopodium quinoa HOM05D000803 ORTHO05D001162 3.0e-06 55.8 128 32.8
MD10G1011900 Malus domestica HOM05D000803 ORTHO05D001162 3.0e-06 55.8 54 40.7
Prupe.8G016900 Prunus persica HOM05D000803 ORTHO05D001162 3.0e-06 55.8 54 40.7
SEGI_39306 Sequoiadendron giganteum HOM05D000803 ORTHO05D001162 3.0e-06 55.8 56 41.1
Atru.chr6.3002 Acer truncatum HOM05D000803 ORTHO05D001162 3.9e-06 55.5 44 54.5
Aqoxy4G00864 Aquilegia oxysepala HOM05D000803 ORTHO05D001162 3.9e-06 55.5 54 46.3
FvH4_6g26180 Fragaria vesca HOM05D000803 ORTHO05D001162 3.9e-06 55.5 54 48.1
FAN02G1940 Fragaria x ananassa HOM05D000803 ORTHO05D001162 3.9e-06 55.5 54 48.1
FAN02G4328 Fragaria x ananassa HOM05D000803 ORTHO05D001162 3.9e-06 55.5 54 48.1
FAN05G1882 Fragaria x ananassa HOM05D000803 ORTHO05D001162 3.9e-06 55.5 54 48.1
Os12g0188700 Oryza sativa ssp. japonica HOM05D000803 ORTHO05D001162 5.1e-06 55.1 90 37.8
Actinidia03442 Actinidia chinensis HOM05D000803 ORTHO05D001162 6.6e-06 54.7 54 38.9
Actinidia29509 Actinidia chinensis HOM05D000803 ORTHO05D001162 6.6e-06 54.7 54 38.9
arahy.Tifrunner.gnm1.ann1.2JA7D7 Arachis hypogaea HOM05D000803 ORTHO05D001162 6.6e-06 54.7 120 35.8
ClCG08G002220 Citrullus lanatus HOM05D000803 ORTHO05D007008 6.6e-06 54.7 105 37.1
FvH4_2g14900 Fragaria vesca HOM05D000803 ORTHO05D001162 6.6e-06 54.7 94 33.0
FAN24G1956 Fragaria x ananassa HOM05D000803 ORTHO05D001162 6.6e-06 54.7 94 33.0
FAN27G3006 Fragaria x ananassa HOM05D000803 ORTHO05D001162 6.6e-06 54.7 94 33.0
Gorai.012G129200 Gossypium raimondii HOM05D000803 ORTHO05D001162 6.6e-06 54.7 54 46.3
MD05G1011900 Malus domestica HOM05D000803 ORTHO05D001162 6.6e-06 54.7 74 37.8
Atru.chr13.1667 Acer truncatum HOM05D000803 ORTHO05D001162 8.7e-06 54.3 44 47.7
CSS0012956 Camellia sinensis var. sinensis HOM05D000803 ORTHO05D001162 8.7e-06 54.3 48 43.8
CDE02G3546 Ceratophyllum demersum HOM05D000803 ORTHO05D001162 8.7e-06 54.3 51 43.1
Thhalv10008668m.g Eutrema salsugineum HOM05D000803 ORTHO05D001162 8.7e-06 54.3 103 34.0
FAN20G0142 Fragaria x ananassa HOM05D000803 ORTHO05D001162 8.7e-06 54.3 54 38.9
Hma1.2p1_0655F.1_g196720 Hydrangea macrophylla HOM05D000803 ORTHO05D001162 8.7e-06 54.3 44 47.7
Hma1.2p1_2059F.1_g312900 Hydrangea macrophylla HOM05D000803 ORTHO05D001162 8.7e-06 54.3 44 47.7
Peaxi162Scf00069g01330 Petunia axillaris HOM05D000803 ORTHO05D001162 8.7e-06 54.3 58 41.4
SMO353G0239 Selaginella moellendorffii HOM05D000803 ORTHO05D001162 8.7e-06 54.3 41 53.7
SMO364G0178 Selaginella moellendorffii HOM05D000803 ORTHO05D009288 8.7e-06 54.3 39 48.7


User provided reference genes

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