Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 1.6e-48 195.7 94 100.0
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 2.0e-30 135.6 76 88.2
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 6.4e-29 130.6 78 84.6
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 4.2e-28 127.9 78 82.1
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 2.1e-27 125.6 72 80.6
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 2.7e-27 125.2 72 83.3
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 2.7e-27 125.2 72 80.6
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 4.6e-27 124.4 78 78.2
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 6.0e-27 124.0 72 80.6
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 6.0e-27 124.0 72 80.6
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 6.0e-27 124.0 72 80.6
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 6.0e-27 124.0 72 80.6
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 6.0e-27 124.0 72 80.6
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 6.0e-27 124.0 72 80.6
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 7.9e-27 123.6 78 79.5
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.0e-26 123.2 72 80.6
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 1.3e-26 122.9 70 82.9
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.3e-26 122.9 72 79.2
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 1.8e-26 122.5 72 80.6
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 1.8e-26 122.5 72 81.9
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.8e-26 122.5 72 77.8
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.8e-26 122.5 72 77.8
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 1.8e-26 122.5 72 77.8
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 1.8e-26 122.5 72 79.2
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 1.8e-26 122.5 72 80.6
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 1.8e-26 122.5 72 79.2
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 1.8e-26 122.5 72 79.2
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 1.8e-26 122.5 71 77.5
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 2.3e-26 122.1 72 79.2
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 3.0e-26 121.7 72 79.2
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 3.0e-26 121.7 77 75.3
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 3.0e-26 121.7 71 77.5
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 3.9e-26 121.3 72 76.4
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 3.9e-26 121.3 72 77.8
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 5.1e-26 120.9 72 76.4
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 5.1e-26 120.9 71 78.9
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 6.7e-26 120.6 78 75.6
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 6.7e-26 120.6 78 78.2
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 8.7e-26 120.2 72 79.2
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 8.7e-26 120.2 77 76.6
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 8.7e-26 120.2 72 77.8
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 1.1e-25 119.8 72 79.2
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 1.5e-25 119.4 72 77.8
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 1.5e-25 119.4 72 80.6
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.9e-25 119.0 72 76.4
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 2.5e-25 118.6 72 77.8
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 2.5e-25 118.6 72 79.2
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 3.3e-25 118.2 71 77.5
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 3.3e-25 118.2 72 76.4
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 3.3e-25 118.2 77 75.3
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 4.3e-25 117.9 72 77.8
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 4.3e-25 117.9 71 77.5
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 5.6e-25 117.5 72 75.0
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 5.6e-25 117.5 71 78.9
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 5.6e-25 117.5 72 75.0
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 7.4e-25 117.1 78 73.1
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 7.4e-25 117.1 77 74.0
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.3e-24 116.3 72 77.8
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 1.3e-24 116.3 77 72.7
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.6e-24 115.9 72 75.0
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 2.1e-24 115.5 70 72.9
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 2.1e-24 115.5 72 75.0
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 2.8e-24 115.2 93 61.3
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 3.7e-24 114.8 76 76.3
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 4.8e-24 114.4 72 76.4
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 6.2e-24 114.0 71 73.2
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 1.1e-23 113.2 72 72.2
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.1e-23 113.2 78 73.1
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.1e-23 113.2 78 73.1
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 1.4e-23 112.8 78 67.9
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.4e-23 112.8 78 73.1
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 1.8e-23 112.5 72 68.1
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.8e-23 112.5 71 74.6
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 2.4e-23 112.1 72 70.8
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.4e-23 112.1 78 71.8
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 2.4e-23 112.1 76 73.7
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 3.1e-23 111.7 72 73.6
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 4.0e-23 111.3 71 73.2
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 4.0e-23 111.3 72 70.8
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 5.3e-23 110.9 77 70.1
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 5.3e-23 110.9 69 76.8
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 6.9e-23 110.5 72 72.2
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 6.9e-23 110.5 72 72.2
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 6.9e-23 110.5 72 69.4
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 6.9e-23 110.5 72 72.2
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 6.9e-23 110.5 69 76.8
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 6.9e-23 110.5 71 73.2
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 9.0e-23 110.2 70 74.3
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 9.0e-23 110.2 78 70.5
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 1.2e-22 109.8 72 68.1
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 1.5e-22 109.4 72 69.4
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.0e-22 109.0 100 58.0
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.0e-22 109.0 71 71.8
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.0e-22 109.0 71 71.8
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 2.6e-22 108.6 72 70.8
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 2.6e-22 108.6 72 69.4
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 3.4e-22 108.2 70 71.4
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 3.4e-22 108.2 72 72.2
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 4.5e-22 107.8 72 70.8
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 4.5e-22 107.8 72 70.8
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 4.5e-22 107.8 72 70.8
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 4.5e-22 107.8 72 70.8
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 4.5e-22 107.8 72 68.1
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 7.6e-22 107.1 72 66.7
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 1.3e-21 106.3 72 68.1
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 1.3e-21 106.3 72 68.1
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 1.7e-21 105.9 72 66.7
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 1.7e-21 105.9 72 66.7
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 1.7e-21 105.9 72 66.7
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 1.7e-21 105.9 72 66.7
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 2.2e-21 105.5 72 66.7
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 2.2e-21 105.5 72 66.7
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 2.2e-21 105.5 71 71.8
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 8.4e-21 103.6 68 72.1
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 8.4e-21 103.6 73 69.9
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.1e-20 103.2 72 65.3
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 2.5e-20 102.1 71 66.2
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 3.2e-20 101.7 72 66.7
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 1.6e-19 99.4 72 63.9
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 2.1e-19 99.0 73 64.4
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 2.7e-19 98.6 68 66.2
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 2.7e-19 98.6 71 64.8
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 3.5e-19 98.2 91 57.1
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 3.5e-19 98.2 118 49.2
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 6.0e-19 97.4 76 63.2
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.3e-18 96.3 72 62.5
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.8e-18 95.9 123 45.5
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 3.9e-18 94.7 75 62.7
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 5.1e-18 94.4 76 61.8
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 7.4e-17 90.5 71 60.6
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 5.9e-14 80.9 76 59.2
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 5.9e-14 80.9 76 59.2
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 2.9e-13 78.6 72 58.3
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 2.9e-13 78.6 72 58.3
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 2.9e-13 78.6 72 58.3
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 2.9e-13 78.6 66 53.0
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 3.8e-13 78.2 57 70.2
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 5.0e-13 77.8 65 52.3
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.1e-12 76.6 61 63.9
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 2.5e-12 75.5 170 31.8
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 3.2e-12 75.1 46 76.1
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 7.2e-12 73.9 65 60.0
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 4.6e-11 71.2 52 67.3
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 7.9e-11 70.5 51 64.7
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 7.9e-11 70.5 46 69.6
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.8e-10 69.3 46 69.6
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 5.1e-10 67.8 51 68.6
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 5.1e-10 67.8 70 48.6
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 8.8e-10 67.0 50 60.0
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 4.3e-09 64.7 64 56.2
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 9.7e-09 63.5 54 57.4
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 1.3e-08 63.2 46 65.2
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 1.3e-08 63.2 50 60.0
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 6.9e-07 57.4 43 67.4
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 6.9e-07 57.4 61 44.3
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 9.1e-07 57.0 50 52.0
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 2.0e-06 55.8 55 43.6
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 2.0e-06 55.8 55 43.6
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.4e-06 55.1 46 63.0
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 7.7e-06 53.9 52 51.9


User provided reference genes

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