Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1427300 Malus domestica HOM05D000175 ORTHO05D003429 3.6e-101 372.1 264 100.0
MD08G1235600 Malus domestica HOM05D000175 ORTHO05D003429 8.6e-71 271.2 254 79.1
Prupe.1G571300 Prunus persica HOM05D000175 ORTHO05D003429 7.1e-57 224.9 276 66.3
RcHm_v2.0_Chr7g0221771 Rosa chinensis HOM05D000175 ORTHO05D003429 6.6e-39 165.2 271 54.6
FAN04G2895 Fragaria x ananassa HOM05D000175 ORTHO05D003429 6.2e-37 158.7 271 50.9
FvH4_5g29110 Fragaria vesca HOM05D000175 ORTHO05D003429 5.3e-36 155.6 270 55.2
FAN18G3229 Fragaria x ananassa HOM05D000175 ORTHO05D003429 4.5e-35 152.5 270 54.4
FAN13G1408 Fragaria x ananassa HOM05D000175 ORTHO05D003429 2.2e-34 150.2 270 54.1
FAN08G1710 Fragaria x ananassa HOM05D000175 ORTHO05D003429 4.5e-27 125.9 255 52.2
TWI59G0278 Tripterygium wilfordii HOM05D000175 ORTHO05D003429 4.2e-17 92.8 278 37.1
Cfa005506 Carpinus fangiana HOM05D000175 ORTHO05D003429 1.6e-16 90.9 265 33.6
TPR.G2058 Trifolium pratense HOM05D000175 ORTHO05D003429 7.9e-16 88.6 74 58.1
EL10Ac6g14058 Beta vulgaris HOM05D000175 ORTHO05D003429 1.8e-15 87.4 239 31.8
Cc02_g22640 Coffea canephora HOM05D000175 ORTHO05D003429 2.3e-15 87.0 75 60.0
Peaxi162Scf00152g01441 Petunia axillaris HOM05D000175 ORTHO05D003429 3.9e-15 86.3 65 61.5
Cpa.g.c26548.4 Carica papaya HOM05D000175 ORTHO05D003429 5.1e-15 85.9 62 66.1
MELO3C014371.2 Cucumis melo HOM05D000175 ORTHO05D003429 8.7e-15 85.1 255 36.5
Psat1g221160 Pisum sativum HOM05D000175 ORTHO05D003429 1.1e-14 84.7 70 61.4
CiPaw.05G048900 Carya illinoinensis HOM05D000175 ORTHO05D003429 1.9e-14 84.0 65 58.5
Thecc.02G088300 Theobroma cacao HOM05D000175 ORTHO05D003429 1.9e-14 84.0 264 36.7
Nitab4.5_0001093g0010 Nicotiana tabacum HOM05D000175 ORTHO05D003429 3.3e-14 83.2 65 60.0
Dinv24293 Davidia involucrata HOM05D000175 ORTHO05D003429 7.4e-14 82.0 55 72.7
Medtr2g006890 Medicago truncatula HOM05D000175 ORTHO05D003429 7.4e-14 82.0 60 63.3
Oeu000108.1 Olea europaea HOM05D000175 ORTHO05D003429 7.4e-14 82.0 69 60.9
TAR376G0063 Trochodendron aralioides HOM05D000175 ORTHO05D003429 7.4e-14 82.0 62 64.5
Sc18g0004310 Simmondsia chinensis HOM05D000175 ORTHO05D003429 9.6e-14 81.6 59 71.2
Eucgr.G00563 Eucalyptus grandis HOM05D000175 ORTHO05D003429 1.6e-13 80.9 103 43.7
SGA_v2.0_scaffold110G31334 Striga asiatica HOM05D000175 ORTHO05D003429 2.1e-13 80.5 66 59.1
CSS0007389 Camellia sinensis var. sinensis HOM05D000175 ORTHO05D003429 2.8e-13 80.1 263 33.8
COL.COLO4_15439 Corchorus olitorius HOM05D000175 ORTHO05D003429 2.8e-13 80.1 68 55.9
Nitab4.5_0000001g0320 Nicotiana tabacum HOM05D000175 ORTHO05D003429 3.7e-13 79.7 66 60.6
CsaV3_6G037470 Cucumis sativus L. HOM05D000175 ORTHO05D003429 4.8e-13 79.3 253 37.2
AL1G22020 Arabidopsis lyrata HOM05D000175 ORTHO05D003429 1.1e-12 78.2 279 30.5
Ca_00069_v3 Cicer arietinum L. HOM05D000175 ORTHO05D003429 1.1e-12 78.2 271 30.6
BolC5t29674H Brassica oleracea HOM05D000175 ORTHO05D003429 2.4e-12 77.0 57 66.7
BraA06t23976Z Brassica rapa HOM05D000175 ORTHO05D003429 2.4e-12 77.0 57 66.7
CiPaw.06G146500 Carya illinoinensis HOM05D000175 ORTHO05D003429 2.4e-12 77.0 66 57.6
QL02p099217 Quercus lobata HOM05D000175 ORTHO05D003429 2.4e-12 77.0 61 67.2
AT1G11040 Arabidopsis thaliana HOM05D000175 ORTHO05D003429 3.1e-12 76.6 279 30.1
A06p07750 Brassica napus HOM05D000175 ORTHO05D003429 3.1e-12 76.6 57 66.7
A08p33690 Brassica napus HOM05D000175 ORTHO05D003429 3.1e-12 76.6 265 33.2
C05p09340 Brassica napus HOM05D000175 ORTHO05D003429 3.1e-12 76.6 57 64.9
Lalb_Chr18g0060931 Lupinus albus HOM05D000175 ORTHO05D003429 3.1e-12 76.6 60 60.0
BraA08t35285Z Brassica rapa HOM05D000175 ORTHO05D003429 4.1e-12 76.3 70 60.0
THA.LOC104809575 Tarenaya hassleriana HOM05D000175 ORTHO05D003429 5.3e-12 75.9 60 61.7
Actinidia39032 Actinidia chinensis HOM05D000175 ORTHO05D003429 6.9e-12 75.5 69 52.2
BolC8t49046H Brassica oleracea HOM05D000175 ORTHO05D003429 6.9e-12 75.5 70 58.6
Thhalv10007652m.g Eutrema salsugineum HOM05D000175 ORTHO05D003429 6.9e-12 75.5 284 29.9
Lj1g0025096 Lotus japonicus HOM05D000175 ORTHO05D003429 6.9e-12 75.5 73 57.5
Lalb_Chr20g0123521 Lupinus albus HOM05D000175 ORTHO05D003429 6.9e-12 75.5 69 52.2
Aqoxy6G00250 Aquilegia oxysepala HOM05D000175 ORTHO05D003429 9.0e-12 75.1 60 61.7
Gohir.A01G005101 Gossypium hirsutum HOM05D000175 ORTHO05D003429 9.0e-12 75.1 60 60.0
Dinv19377 Davidia involucrata HOM05D000175 ORTHO05D003429 1.2e-11 74.7 73 54.8
Lj6g0012353 Lotus japonicus HOM05D000175 ORTHO05D003429 1.2e-11 74.7 56 62.5
VMungo0540G1938 Vigna mungo HOM05D000175 ORTHO05D003429 1.2e-11 74.7 244 30.3
Carub.0001s1060 Capsella rubella HOM05D000175 ORTHO05D003429 1.5e-11 74.3 279 30.5
CARHR011230 Cardamine hirsuta HOM05D000175 ORTHO05D003429 1.5e-11 74.3 61 57.4
COL.COLO4_24723 Corchorus olitorius HOM05D000175 ORTHO05D003429 1.5e-11 74.3 60 60.0
Glyma.15G045800 Glycine max HOM05D000175 ORTHO05D003429 1.5e-11 74.3 71 54.9
DCAR_029258 Daucus carota HOM05D000175 ORTHO05D003429 2.0e-11 73.9 67 55.2
Duzib052G0959 Durio zibethinus HOM05D000175 ORTHO05D003429 2.0e-11 73.9 52 65.4
Solyc06g060240.1 Solanum lycopersicum HOM05D000175 ORTHO05D003429 2.0e-11 73.9 74 48.6
CANSAT11G2457 Cannabis sativa HOM05D000175 ORTHO05D003429 2.6e-11 73.6 73 57.5
Sp1g09730 Schrenkiella parvula HOM05D000175 ORTHO05D003429 2.6e-11 73.6 284 31.0
Aa31LG1G3870 Aethionema arabicum HOM05D000175 ORTHO05D003429 3.4e-11 73.2 292 30.1
PGR044G1188 Punica granatum HOM05D000175 ORTHO05D003429 3.4e-11 73.2 102 44.1
Manes.10G125800 Manihot esculenta HOM05D000175 ORTHO05D003429 4.5e-11 72.8 98 44.9
Sopen06g020360 Solanum pennellii HOM05D000175 ORTHO05D003429 4.5e-11 72.8 74 47.3
PGSC0003DMG400024427 Solanum tuberosum HOM05D000175 ORTHO05D003429 4.5e-11 72.8 76 51.3
CAN.G145.10 Capsicum annuum HOM05D000175 ORTHO05D003429 7.6e-11 72.0 74 51.4
SalBow5G3005 Salvia bowleyana HOM05D000175 ORTHO05D003429 7.6e-11 72.0 58 58.6
Cfa018574 Carpinus fangiana HOM05D000175 ORTHO05D003429 1.0e-10 71.6 65 60.0
ClCG11G015840 Citrullus lanatus HOM05D000175 ORTHO05D003429 1.0e-10 71.6 57 59.6
Haze_17506 Corylus avellana HOM05D000175 ORTHO05D003429 1.0e-10 71.6 65 60.0
Gohir.D01G005200 Gossypium hirsutum HOM05D000175 ORTHO05D003429 1.0e-10 71.6 55 63.6
Gorai.002G006100 Gossypium raimondii HOM05D000175 ORTHO05D003429 1.0e-10 71.6 55 63.6
Phvul.006G215400 Phaseolus vulgaris HOM05D000175 ORTHO05D003429 1.0e-10 71.6 252 28.6
BcaNung04770 Brassica carinata HOM05D000175 ORTHO05D003429 1.7e-10 70.9 54 63.0
Sed0023031 Sechium edule HOM05D000175 ORTHO05D003429 1.7e-10 70.9 60 56.7
arahy.Tifrunner.gnm1.ann1.1F8QU1 Arachis hypogaea HOM05D000175 ORTHO05D003429 2.2e-10 70.5 58 56.9
Lalb_Chr08g0241371 Lupinus albus HOM05D000175 ORTHO05D003429 2.2e-10 70.5 75 50.7
Peaxi162Scf00051g01310 Petunia axillaris HOM05D000175 ORTHO05D003429 2.2e-10 70.5 60 55.0
Solyc11g044450.3 Solanum lycopersicum HOM05D000175 ORTHO05D003429 2.9e-10 70.1 100 39.0
Sopen11g020010 Solanum pennellii HOM05D000175 ORTHO05D003429 2.9e-10 70.1 76 50.0
Cpa.g.sc64.105 Carica papaya HOM05D000175 ORTHO05D003429 5.0e-10 69.3 72 55.6
arahy.Tifrunner.gnm1.ann1.ZW6KD7 Arachis hypogaea HOM05D000175 ORTHO05D003429 6.5e-10 68.9 58 55.2
DCAR_006701 Daucus carota HOM05D000175 ORTHO05D003429 8.5e-10 68.6 74 51.4
Nn5g28356 Nelumbo nucifera HOM05D000175 ORTHO05D003429 8.5e-10 68.6 79 48.1
Sabra02G0064000 Salix brachista HOM05D000175 ORTHO05D003429 8.5e-10 68.6 58 58.6
Potri.002G081700 Populus trichocarpa HOM05D000175 ORTHO05D003429 1.1e-09 68.2 71 53.5
ClCG09G014010 Citrullus lanatus HOM05D000175 ORTHO05D003429 1.4e-09 67.8 257 40.9
Manes.18G079100 Manihot esculenta HOM05D000175 ORTHO05D003429 1.4e-09 67.8 73 50.7
Migut.N01044 Erythranthe guttata HOM05D000175 ORTHO05D003429 1.9e-09 67.4 110 37.3
Nn1g08879 Nelumbo nucifera HOM05D000175 ORTHO05D003429 1.9e-09 67.4 42 71.4
C08p14090 Brassica napus HOM05D000175 ORTHO05D003429 3.2e-09 66.6 52 61.5
Glyma.08G187200 Glycine max HOM05D000175 ORTHO05D003429 3.2e-09 66.6 60 53.3
Rhsim06G0101900 Rhododendron simsii HOM05D000175 ORTHO05D003429 3.2e-09 66.6 73 49.3
Ciclev10003603m.g Citrus clementina HOM05D000175 ORTHO05D003429 5.5e-09 65.9 59 59.3
Sed0009216 Sechium edule HOM05D000175 ORTHO05D003429 5.5e-09 65.9 259 35.1
TWI60G1024 Tripterygium wilfordii HOM05D000175 ORTHO05D003429 5.5e-09 65.9 90 47.8
MELO3C010495.2 Cucumis melo HOM05D000175 ORTHO05D003429 7.2e-09 65.5 53 60.4
Thecc.08G128200 Theobroma cacao HOM05D000175 ORTHO05D003429 7.2e-09 65.5 76 48.7
Lj9A304T83 Lonicera japonica HOM05D000175 ORTHO05D003429 1.2e-08 64.7 63 46.0
Manes.02G165300 Manihot esculenta HOM05D000175 ORTHO05D003429 1.2e-08 64.7 74 47.3
Nitab4.5_0000322g0090 Nicotiana tabacum HOM05D000175 ORTHO05D003429 1.2e-08 64.7 69 47.8
Phvul.009G126300 Phaseolus vulgaris HOM05D000175 ORTHO05D003429 1.2e-08 64.7 69 49.3
TAR625G1347 Trochodendron aralioides HOM05D000175 ORTHO05D003429 1.2e-08 64.7 43 67.4
CsaV3_4G028140 Cucumis sativus L. HOM05D000175 ORTHO05D003429 1.6e-08 64.3 53 60.4
PGR042G1648 Punica granatum HOM05D000175 ORTHO05D003429 1.6e-08 64.3 47 61.7
CiPaw.15G087500 Carya illinoinensis HOM05D000175 ORTHO05D003429 2.1e-08 63.9 57 52.6
Medtr3g088140 Medicago truncatula HOM05D000175 ORTHO05D003429 2.7e-08 63.5 74 45.9
Psat5g086520 Pisum sativum HOM05D000175 ORTHO05D003429 2.7e-08 63.5 69 47.8
MD15G1345600 Malus domestica HOM05D000175 ORTHO05D003429 3.6e-08 63.2 57 52.6
Glyma.04G248600 Glycine max HOM05D000175 ORTHO05D003429 4.6e-08 62.8 74 44.6
Gohir.A06G045800 Gossypium hirsutum HOM05D000175 ORTHO05D003429 6.1e-08 62.4 78 48.7
Gohir.D06G046300 Gossypium hirsutum HOM05D000175 ORTHO05D003429 6.1e-08 62.4 78 48.7
Gorai.010G051600 Gossypium raimondii HOM05D000175 ORTHO05D003429 6.1e-08 62.4 78 48.7
PGSC0003DMG400017553 Solanum tuberosum HOM05D000175 ORTHO05D003429 6.1e-08 62.4 52 57.7
Sabra01G0163600 Salix brachista HOM05D000175 ORTHO05D003429 1.0e-07 61.6 56 58.9
TWI34G1448 Tripterygium wilfordii HOM05D000175 ORTHO05D003429 1.0e-07 61.6 49 63.3
VMungo1309G1645 Vigna mungo HOM05D000175 ORTHO05D003429 1.0e-07 61.6 52 55.8
Sed0004914 Sechium edule HOM05D000175 ORTHO05D003429 1.3e-07 61.2 269 33.5
GSVIVG01022872001 Vitis vinifera HOM05D000175 ORTHO05D003429 2.3e-07 60.5 37 73.0
Ca_16565_v3 Cicer arietinum L. HOM05D000175 ORTHO05D003429 3.0e-07 60.1 74 44.6
Potri.001G211800 Populus trichocarpa HOM05D000175 ORTHO05D003429 3.0e-07 60.1 70 52.9
Actinidia29475 Actinidia chinensis HOM05D000175 ORTHO05D003429 3.9e-07 59.7 60 51.7
CANSAT25G3552 Cannabis sativa HOM05D000175 ORTHO05D003429 3.9e-07 59.7 42 66.7
Eucgr.F04343 Eucalyptus grandis HOM05D000175 ORTHO05D003429 3.9e-07 59.7 60 48.3
CSS0015810 Camellia sinensis var. sinensis HOM05D000175 ORTHO05D003429 5.1e-07 59.3 59 59.3
Migut.C01107 Erythranthe guttata HOM05D000175 ORTHO05D003429 5.1e-07 59.3 75 40.0
MD00G1029000 Malus domestica HOM05D000175 ORTHO05D003429 5.1e-07 59.3 57 49.1
Potri.005G179400 Populus trichocarpa HOM05D000175 ORTHO05D003429 5.1e-07 59.3 76 47.4
Atru.chr13.1506 Acer truncatum HOM05D000175 ORTHO05D003429 6.7e-07 58.9 44 63.6
Nitab4.5_0003719g0030 Nicotiana tabacum HOM05D000175 ORTHO05D003429 6.7e-07 58.9 48 54.2
DCAR_014383 Daucus carota HOM05D000175 ORTHO05D003429 1.1e-06 58.2 66 48.5
Dinv14636 Davidia involucrata HOM05D000175 ORTHO05D003429 1.1e-06 58.2 48 56.2
Aa31LG9G14200 Aethionema arabicum HOM05D000175 ORTHO05D003429 1.5e-06 57.8 80 48.8
AL1G52200 Arabidopsis lyrata HOM05D000175 ORTHO05D003429 1.5e-06 57.8 78 48.7
CSS0023247 Camellia sinensis var. sinensis HOM05D000175 ORTHO05D003429 1.5e-06 57.8 76 51.3
Cc10_g12090 Coffea canephora HOM05D000175 ORTHO05D003429 1.5e-06 57.8 62 43.5
Thhalv10011600m.g Eutrema salsugineum HOM05D000175 ORTHO05D003429 1.5e-06 57.8 55 52.7
Gohir.D05G238700 Gossypium hirsutum HOM05D000175 ORTHO05D003429 1.5e-06 57.8 61 50.8
MBI03_g28540_MAGBIO Magnolia biondii HOM05D000175 ORTHO05D003429 1.5e-06 57.8 75 38.7
QL09p033975 Quercus lobata HOM05D000175 ORTHO05D003429 1.5e-06 57.8 53 47.2
Carub.0001s3508 Capsella rubella HOM05D000175 ORTHO05D003429 1.9e-06 57.4 56 57.1
Ciclev10003769m.g Citrus clementina HOM05D000175 ORTHO05D003429 1.9e-06 57.4 83 43.4
Haze_01735 Corylus avellana HOM05D000175 ORTHO05D003429 1.9e-06 57.4 249 28.9
Lj7A343T67 Lonicera japonica HOM05D000175 ORTHO05D003429 1.9e-06 57.4 101 33.7
SGA_v2.0_scaffold24G10449 Striga asiatica HOM05D000175 ORTHO05D003429 1.9e-06 57.4 75 45.3
PSO170G3276 Papaver somniferum HOM05D000175 ORTHO05D003429 2.5e-06 57.0 45 57.8
PSO528G0206 Papaver somniferum HOM05D000175 ORTHO05D003429 2.5e-06 57.0 45 57.8
arahy.Tifrunner.gnm1.ann1.9XSN4Y Arachis hypogaea HOM05D000175 ORTHO05D003429 5.7e-06 55.8 76 47.4
CARHR035830 Cardamine hirsuta HOM05D000175 ORTHO05D003429 5.7e-06 55.8 97 37.1
Prupe.1G493700 Prunus persica HOM05D000175 ORTHO05D003429 5.7e-06 55.8 101 34.7
RcHm_v2.0_Chr6g0296201 Rosa chinensis HOM05D000175 ORTHO05D003429 5.7e-06 55.8 52 55.8
BcaB02g11445 Brassica carinata HOM05D000175 ORTHO05D003429 7.4e-06 55.5 77 42.9
FvH4_2g27360 Fragaria vesca HOM05D000175 ORTHO05D003429 7.4e-06 55.5 118 36.4
FAN15G1612 Fragaria x ananassa HOM05D000175 ORTHO05D003429 7.4e-06 55.5 109 41.3
FAN15G2719 Fragaria x ananassa HOM05D000175 ORTHO05D003429 7.4e-06 55.5 109 41.3
FAN24G1051 Fragaria x ananassa HOM05D000175 ORTHO05D003429 7.4e-06 55.5 118 36.4
vmacro01753 Vaccinium macrocarpon HOM05D000175 ORTHO05D003429 7.4e-06 55.5 63 49.2
Gorai.009G247400 Gossypium raimondii HOM05D000175 ORTHO05D003429 9.7e-06 55.1 60 50.0
SalBow7G4600 Salvia bowleyana HOM05D000175 ORTHO05D003429 9.7e-06 55.1 58 44.8
THA.LOC104808249 Tarenaya hassleriana HOM05D000175 ORTHO05D003429 9.7e-06 55.1 52 53.8


User provided reference genes

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