Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 1.4e-70 269.6 148 100.0
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 1.4e-62 243.0 148 89.2
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 1.2e-61 240.0 148 87.8
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 1.3e-60 236.5 148 85.8
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 3.2e-59 231.9 143 88.1
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 9.4e-59 230.3 144 86.1
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.2e-58 229.9 144 86.1
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.4e-57 226.5 143 85.3
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 8.2e-55 217.2 148 78.4
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 2.4e-54 215.7 148 76.4
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 4.1e-54 214.9 148 76.4
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 5.3e-54 214.5 148 75.7
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 1.6e-53 213.0 148 75.7
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 2.0e-53 212.6 148 75.7
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 2.7e-53 212.2 148 74.3
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 2.7e-53 212.2 148 75.0
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 3.5e-53 211.8 148 74.3
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 4.5e-53 211.5 148 75.7
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 7.7e-53 210.7 147 76.9
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 1.0e-52 210.3 148 73.6
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 1.0e-52 210.3 148 74.3
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 3.8e-52 208.4 148 73.0
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 8.5e-52 207.2 148 72.3
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 1.9e-51 206.1 148 73.0
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 2.5e-51 205.7 148 72.3
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.2e-51 205.3 148 71.6
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 3.2e-51 205.3 148 71.6
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 5.5e-51 204.5 148 73.6
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 7.2e-51 204.1 148 72.3
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 2.7e-50 202.2 148 70.3
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 4.7e-50 201.4 148 70.9
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.4e-49 199.9 148 73.0
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 3.0e-49 198.7 148 70.9
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 5.2e-49 198.0 143 74.8
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 7.5e-48 194.1 148 69.6
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 4.8e-47 191.4 148 71.6
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 4.8e-47 191.4 150 70.0
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 1.1e-46 190.3 148 68.9
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 1.8e-46 189.5 148 68.9
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 5.4e-46 188.0 140 70.7
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 5.4e-46 188.0 145 67.6
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 7.0e-46 187.6 152 65.1
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 9.1e-46 187.2 148 68.9
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 1.2e-45 186.8 150 68.7
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 1.6e-45 186.4 148 70.9
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 2.7e-45 185.7 150 66.0
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 1.0e-44 183.7 148 64.2
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 6.5e-44 181.0 150 65.3
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 2.5e-43 179.1 151 66.2
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 3.3e-43 178.7 118 83.1
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 4.2e-43 178.3 120 80.8
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 4.2e-43 178.3 151 66.9
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 5.5e-43 177.9 148 64.9
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 7.2e-43 177.6 119 79.8
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 7.2e-43 177.6 143 68.5
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 7.2e-43 177.6 151 66.2
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.6e-42 176.4 119 79.8
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 1.6e-42 176.4 119 79.8
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 2.1e-42 176.0 140 62.9
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 2.8e-42 175.6 150 63.3
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 4.7e-42 174.9 144 64.6
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 8.0e-42 174.1 152 65.1
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 2.3e-41 172.6 150 62.0
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 3.4e-40 168.7 150 62.0
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 9.8e-40 167.2 114 78.9
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 1.3e-39 166.8 121 72.7
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 1.7e-39 166.4 148 68.2
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 2.8e-39 165.6 114 78.9
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 2.8e-39 165.6 148 63.5
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 8.3e-39 164.1 138 62.3
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 1.8e-38 162.9 141 61.0
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 2.4e-38 162.5 143 62.9
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 7.0e-38 161.0 121 72.7
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 1.6e-37 159.8 152 61.8
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 1.6e-37 159.8 119 69.7
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 2.0e-37 159.5 148 64.2
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 2.0e-37 159.5 155 58.7
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.3e-36 156.8 149 59.1
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.3e-36 156.8 149 59.1
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 1.3e-36 156.8 132 64.4
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.3e-36 156.0 149 59.1
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.9e-35 152.9 150 58.0
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 3.3e-35 152.1 148 59.5
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 4.3e-35 151.8 148 58.8
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 5.6e-35 151.4 148 56.8
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 9.5e-35 150.6 150 57.3
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 2.1e-34 149.4 151 56.3
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 2.8e-34 149.1 140 55.0
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 2.8e-34 149.1 148 56.1
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 4.7e-34 148.3 114 70.2
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 4.7e-34 148.3 149 61.1
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 8.0e-34 147.5 149 59.7
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 4.0e-33 145.2 149 53.0
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 8.9e-33 144.1 148 56.8
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 1.2e-32 143.7 148 55.4
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.2e-32 143.7 129 60.5
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 1.5e-32 143.3 148 55.4
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 1.5e-32 143.3 148 55.4
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 1.5e-32 143.3 148 55.4
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 1.5e-32 143.3 148 55.4
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 1.5e-32 143.3 148 55.4
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 2.6e-32 142.5 148 54.7
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 3.4e-32 142.1 138 57.2
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 3.4e-32 142.1 112 66.1
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 4.4e-32 141.7 148 54.7
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 7.5e-32 141.0 148 55.4
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 9.8e-32 140.6 148 54.7
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 2.2e-31 139.4 110 68.2
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 2.2e-31 139.4 148 54.1
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 1.4e-30 136.7 149 57.7
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 2.4e-30 136.0 150 52.7
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 2.4e-30 136.0 150 52.7
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 4.6e-29 131.7 119 58.8
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.5e-27 125.9 151 50.3
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 2.3e-25 119.4 125 52.0
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 5.2e-25 118.2 148 43.2
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 3.5e-21 105.5 119 56.3
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 6.0e-21 104.8 103 62.1
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 3.9e-20 102.1 103 61.2
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.9e-19 99.8 79 63.3
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 4.3e-19 98.6 75 69.3
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 5.2e-17 91.7 72 70.8
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 7.5e-16 87.8 92 58.7
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 1.3e-15 87.0 89 53.9
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 1.4e-14 83.6 59 74.6
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 2.1e-13 79.7 95 52.6
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 2.7e-13 79.3 89 49.4
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 6.0e-13 78.2 83 54.2
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 1.7e-12 76.6 62 64.5
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 6.6e-12 74.7 136 39.7
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.6e-10 68.9 128 45.3
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 3.6e-10 68.9 128 45.3
Oeu000185.1 Olea europaea HOM05D005880 ORTHO05D007114 1.1e-09 67.4 90 52.2
Gohir.A04G127300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.4e-08 62.4 97 49.5
ATR0794G127 Amborella trichopoda HOM05D005880 ORTHO05D007114 9.9e-08 60.8 130 30.8


User provided reference genes

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