Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 6.0e-109 397.5 198 100.0
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 1.7e-100 369.4 198 90.9
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 1.2e-96 356.7 198 89.4
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 4.1e-94 348.2 198 84.8
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 2.5e-91 339.0 198 83.3
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 4.0e-89 331.6 198 80.3
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.3e-87 326.6 206 79.1
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 1.7e-87 326.2 198 78.8
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.8e-87 325.1 198 81.8
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.8e-87 325.1 206 78.6
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 4.9e-87 324.7 198 78.3
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 3.2e-86 322.0 198 79.3
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 1.2e-85 320.1 198 77.3
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 3.5e-85 318.5 198 77.8
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 7.8e-85 317.4 199 77.9
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 7.8e-85 317.4 198 77.3
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 1.0e-84 317.0 198 76.3
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 1.3e-84 316.6 198 76.3
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 3.0e-84 315.5 198 76.3
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 3.0e-84 315.5 198 78.3
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 8.7e-84 313.9 198 78.8
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 1.1e-83 313.5 198 76.3
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 1.5e-83 313.2 198 77.3
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 1.9e-83 312.8 198 76.8
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 1.9e-83 312.8 198 73.7
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.5e-83 312.4 198 76.8
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 2.5e-83 312.4 198 76.8
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 2.5e-83 312.4 198 76.3
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 5.6e-83 311.2 198 75.3
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 5.6e-83 311.2 198 75.3
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 5.6e-83 311.2 198 76.3
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 9.6e-83 310.5 198 74.7
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 1.3e-82 310.1 198 74.2
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 1.6e-82 309.7 198 75.3
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 2.1e-82 309.3 198 75.8
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 3.6e-82 308.5 198 75.8
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 3.6e-82 308.5 198 75.8
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 4.8e-82 308.1 198 74.2
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 6.2e-82 307.8 198 74.2
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 1.4e-81 306.6 198 73.7
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 1.4e-81 306.6 198 72.2
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 1.8e-81 306.2 198 73.2
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 1.8e-81 306.2 198 73.2
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.8e-81 306.2 200 75.5
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 2.4e-81 305.8 198 72.2
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 3.1e-81 305.4 198 73.2
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 4.0e-81 305.1 198 72.2
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 4.0e-81 305.1 198 72.2
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 9.0e-81 303.9 198 74.2
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 1.2e-80 303.5 198 71.7
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 1.5e-80 303.1 199 73.4
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 3.4e-80 302.0 198 71.7
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 7.6e-80 300.8 198 72.2
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 7.6e-80 300.8 198 72.7
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 9.9e-80 300.4 198 72.7
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 1.3e-79 300.1 198 71.7
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 2.2e-79 299.3 198 72.7
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 3.8e-79 298.5 198 74.2
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 3.8e-79 298.5 198 72.2
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 4.9e-79 298.1 198 70.2
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 4.9e-79 298.1 198 71.7
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 6.4e-79 297.7 198 70.7
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 8.4e-79 297.4 198 70.7
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 8.4e-79 297.4 198 71.7
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 1.4e-78 296.6 200 73.0
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 1.4e-78 296.6 198 71.2
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 1.4e-78 296.6 198 71.2
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 1.4e-78 296.6 198 72.2
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 1.9e-78 296.2 198 70.7
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 1.9e-78 296.2 198 71.2
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 2.4e-78 295.8 198 71.2
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 5.4e-78 294.7 198 70.2
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 7.1e-78 294.3 198 69.2
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 7.1e-78 294.3 198 72.2
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 9.3e-78 293.9 198 70.2
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 2.1e-77 292.7 198 70.2
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 2.1e-77 292.7 198 70.2
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 2.7e-77 292.4 198 69.7
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 4.6e-77 291.6 198 69.7
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 6.0e-77 291.2 198 70.2
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 7.9e-77 290.8 216 65.7
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 2.3e-76 289.3 219 64.8
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 3.0e-76 288.9 217 66.8
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 6.6e-76 287.7 234 61.5
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 8.7e-76 287.3 234 61.1
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 2.5e-75 285.8 198 68.7
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 5.6e-75 284.6 176 78.4
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 4.8e-74 281.6 253 58.9
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 1.2e-72 276.9 170 78.8
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 2.0e-72 276.2 198 65.2
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 1.7e-71 273.1 198 64.6
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 1.7e-71 273.1 241 58.9
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 2.2e-71 272.7 159 84.9
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 2.9e-71 272.3 236 59.3
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 1.1e-70 270.4 233 59.7
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 5.5e-70 268.1 198 64.6
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 1.6e-69 266.5 173 71.1
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 4.6e-69 265.0 198 65.7
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 1.3e-68 263.5 180 68.9
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 1.8e-68 263.1 171 73.1
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 4.8e-66 255.0 188 67.6
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 8.1e-66 254.2 170 70.0
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 7.6e-64 247.7 191 63.4
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 1.3e-63 246.9 198 63.6
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 2.2e-63 246.1 155 74.2
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 2.5e-59 232.6 198 57.1
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 1.1e-57 227.3 198 59.1
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 3.1e-57 225.7 167 65.9
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 1.3e-55 220.3 198 52.5
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 3.8e-55 218.8 198 50.0
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 2.5e-54 216.1 145 69.7
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 7.9e-53 211.1 135 74.1
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 3.9e-52 208.8 195 49.2
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 1.5e-51 206.8 191 49.2
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 1.9e-51 206.5 198 47.5
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 5.5e-46 188.3 151 58.9
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 1.0e-44 184.1 130 67.7
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 1.8e-44 183.3 147 63.9
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 2.5e-43 179.5 185 54.6
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 4.3e-43 178.7 115 74.8
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 1.3e-42 177.2 115 70.4
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 1.1e-41 174.1 120 66.7
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 1.8e-41 173.3 160 50.0
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 3.1e-41 172.6 111 78.4
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 3.8e-39 165.6 130 59.2
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 1.5e-35 153.7 142 52.8
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 9.7e-35 151.0 143 50.3
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.9e-30 136.7 115 52.2
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 2.5e-30 136.3 115 52.2
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 4.7e-29 132.1 77 88.3
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 1.4e-28 130.6 87 63.2
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 8.8e-28 127.9 77 84.4
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 2.6e-27 126.3 82 76.8
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 4.4e-27 125.6 77 81.8
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 1.3e-26 124.0 75 84.0
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 4.8e-26 122.1 122 53.3
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 8.2e-26 121.3 77 77.9
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 1.6e-24 117.1 77 77.9
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 2.7e-24 116.3 77 74.0
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 2.7e-24 116.3 77 74.0
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 3.8e-23 112.5 83 67.5
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 6.5e-23 111.7 77 72.7
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 1.9e-22 110.2 145 36.6
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 7.2e-22 108.2 69 79.7
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 1.5e-19 100.5 72 69.4
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 5.7e-19 98.6 69 63.8
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 7.5e-19 98.2 145 43.4
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 9.8e-19 97.8 75 68.0
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 3.7e-18 95.9 65 70.8
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 1.4e-17 94.0 55 80.0
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 3.1e-17 92.8 68 63.2
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 9.1e-17 91.3 99 46.5
PRCOL_00004865 Prasinoderma coloniale HOM05D004322 ORTHO05D005033 1.3e-15 87.4 191 27.2
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 4.2e-14 82.4 55 61.8
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 2.1e-13 80.1 73 53.4
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 2.1e-13 80.1 64 64.1
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 2.7e-13 79.7 119 37.8
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 1.0e-12 77.8 64 53.1
MCO15G520 Micromonas commoda HOM05D004322 ORTHO05D005033 1.8e-12 77.0 186 24.7
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 6.8e-12 75.1 46 80.4
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 1.5e-11 73.9 61 55.7
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 2.0e-11 73.6 56 60.7
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 3.7e-10 69.3 63 54.0
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 7.0e-09 65.1 55 52.7
VMungo0540G1689 Vigna mungo HOM05D004322 ORTHO05D005033 7.7e-08 61.6 40 80.0
Lsat_1_v5_gn_4_104380 Lactuca sativa HOM05D001722 ORTHO05D048310 5.0e-07 58.9 36 58.3
TAR381G0540 Trochodendron aralioides HOM05D004322 ORTHO05D005033 4.3e-06 55.8 45 62.2


User provided reference genes

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