Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 3.4e-198 694.9 369 100.0
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 1.1e-52 211.5 371 44.5
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 7.6e-41 172.2 370 41.6
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 2.2e-40 170.6 370 41.6
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.2e-40 170.6 370 41.6
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 6.4e-40 169.1 246 43.9
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 4.2e-39 166.4 348 41.1
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.1e-38 164.1 370 40.8
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 3.2e-31 140.2 368 35.1
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 1.8e-29 134.4 274 39.8
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 1.1e-28 131.7 313 39.0
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 2.8e-27 127.1 257 37.7
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 6.9e-26 122.5 310 35.8
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.5e-25 121.3 239 38.5
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.6e-25 120.6 306 38.6
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 3.4e-25 120.2 220 40.5
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.4e-23 114.8 253 38.3
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.2e-23 113.2 251 38.6
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 1.6e-22 111.3 235 39.1
Ciclev10003675m.g Citrus clementina HOM05D004520 ORTHO05D005520 2.8e-19 100.5 255 37.3
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 3.1e-18 97.1 147 44.2
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 6.9e-18 95.9 185 37.3
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 1.5e-17 94.7 123 43.9
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 2.0e-17 94.4 138 44.2
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 5.8e-17 92.8 157 41.4
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 5.8e-17 92.8 125 43.2
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.0e-16 92.0 149 43.0
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 1.7e-16 91.3 126 45.2
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 1.7e-16 91.3 183 35.5
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 2.9e-16 90.5 206 35.4
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.9e-16 90.5 206 35.4
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 3.8e-16 90.1 269 31.6
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 5.0e-16 89.7 149 38.9
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 5.0e-16 89.7 168 38.7
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 5.0e-16 89.7 124 43.5
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 6.5e-16 89.4 200 36.5
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 6.5e-16 89.4 230 32.2
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 8.4e-16 89.0 202 35.6
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 1.4e-15 88.2 123 43.9
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.4e-15 88.2 167 40.1
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 1.9e-15 87.8 150 42.0
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 2.5e-15 87.4 126 46.0
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 4.2e-15 86.7 156 36.5
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 5.5e-15 86.3 147 40.1
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 5.5e-15 86.3 154 37.7
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 7.1e-15 85.9 132 40.9
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 9.3e-15 85.5 163 38.7
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 9.3e-15 85.5 160 40.0
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 9.3e-15 85.5 121 43.0
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 1.6e-14 84.7 77 57.1
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 1.6e-14 84.7 230 33.5
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 2.1e-14 84.3 118 40.7
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 2.1e-14 84.3 90 51.1
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 2.1e-14 84.3 123 44.7
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 4.6e-14 83.2 153 39.9
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 4.6e-14 83.2 241 32.4
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 6.1e-14 82.8 149 40.9
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 6.1e-14 82.8 147 40.1
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 6.1e-14 82.8 163 36.2
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 7.9e-14 82.4 211 35.1
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 1.0e-13 82.0 205 35.6
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 1.0e-13 82.0 205 35.6
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.0e-13 82.0 145 37.2
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 1.3e-13 81.6 294 30.6
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 1.3e-13 81.6 70 61.4
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 1.8e-13 81.3 148 38.5
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.8e-13 81.3 146 38.4
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.8e-13 81.3 130 36.2
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 2.3e-13 80.9 155 34.8
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 3.0e-13 80.5 216 35.2
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 3.0e-13 80.5 216 35.2
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 3.0e-13 80.5 126 38.9
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 3.9e-13 80.1 107 46.7
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 5.1e-13 79.7 75 53.3
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 6.7e-13 79.3 109 43.1
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 1.1e-12 78.6 147 38.8
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.1e-12 78.6 76 52.6
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.1e-12 78.6 177 33.3
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 1.1e-12 78.6 67 56.7
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 1.5e-12 78.2 147 38.8
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 1.5e-12 78.2 146 38.4
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 1.5e-12 78.2 116 42.2
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 1.9e-12 77.8 80 48.8
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 1.9e-12 77.8 147 40.8
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 1.9e-12 77.8 143 38.5
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 1.9e-12 77.8 109 42.2
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 1.9e-12 77.8 204 31.4
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 2.5e-12 77.4 104 46.2
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.5e-12 77.4 140 37.9
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 4.3e-12 76.6 170 32.9
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 4.3e-12 76.6 71 50.7
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 4.3e-12 76.6 95 48.4
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 4.3e-12 76.6 95 48.4
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 4.3e-12 76.6 92 47.8
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 5.7e-12 76.3 97 48.5
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 5.7e-12 76.3 212 30.7
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 7.4e-12 75.9 82 50.0
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 7.4e-12 75.9 211 34.1
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 9.7e-12 75.5 88 46.6
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 1.3e-11 75.1 123 41.5
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 1.3e-11 75.1 84 48.8
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 1.3e-11 75.1 143 37.8
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 1.3e-11 75.1 64 59.4
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 1.6e-11 74.7 93 41.9
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 2.8e-11 73.9 63 57.1
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 2.8e-11 73.9 63 57.1
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 3.7e-11 73.6 87 43.7
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 3.7e-11 73.6 189 36.0
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 3.7e-11 73.6 67 53.7
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 6.3e-11 72.8 170 31.2
PGSC0003DMG400046169 Solanum tuberosum HOM05D004520 ORTHO05D005520 6.3e-11 72.8 82 50.0
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 8.2e-11 72.4 142 38.0
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 8.2e-11 72.4 155 34.2
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 1.1e-10 72.0 142 38.0
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 3.1e-10 70.5 100 43.0
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 9.0e-10 68.9 192 31.8
Ca_26311_v3 Cicer arietinum L. HOM05D016564 ORTHO05D019006 2.0e-09 67.8 151 39.1
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 4.5e-09 66.6 259 29.0
Sed0003147 Sechium edule HOM05D004520 ORTHO05D005520 5.9e-09 66.2 254 30.3
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 1.0e-08 65.5 178 31.5
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.0e-08 65.5 66 48.5
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.0e-08 65.5 66 48.5
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.0e-08 65.5 106 39.6
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 1.3e-08 65.1 113 38.1
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.7e-08 64.7 124 36.3
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 2.9e-08 63.9 99 43.4
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 3.8e-08 63.5 106 38.7
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 5.0e-08 63.2 117 33.3
CAN.G689.16 Capsicum annuum HOM05D004520 ORTHO05D005520 1.1e-07 62.0 63 50.8
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 2.5e-07 60.8 143 32.9
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.2e-07 60.5 77 44.2
TPR.G28946 Trifolium pratense HOM05D016564 ORTHO05D019006 3.2e-07 60.5 161 36.0
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 5.5e-07 59.7 139 32.4
Glyma.04G106800 Glycine max HOM05D016564 ORTHO05D019006 1.6e-06 58.2 252 29.8
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.6e-06 58.2 77 42.9
Oeu017826.1 Olea europaea HOM05D004520 ORTHO05D291388 1.6e-06 58.2 70 42.9
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 1.6e-06 58.2 75 42.7
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 2.7e-06 57.4 112 32.1
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 3.6e-06 57.0 139 33.8
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 4.6e-06 56.6 58 51.7
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 7.9e-06 55.8 96 38.5
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 7.9e-06 55.8 96 38.5
Sp1g19610 Schrenkiella parvula HOM05D004520 ORTHO05D005520 7.9e-06 55.8 94 37.2


User provided reference genes

Program Settings