Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 1.6e-222 775.8 406 100.0
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 5.9e-103 378.6 343 68.5
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 8.8e-91 338.2 332 62.0
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 2.3e-46 190.7 341 44.3
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 8.1e-44 182.2 320 43.1
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 2.3e-43 180.6 256 52.7
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 1.4e-40 171.4 209 51.7
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 3.2e-40 170.2 207 51.7
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 4.1e-40 169.9 207 51.7
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 5.4e-40 169.5 311 46.3
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.7e-39 167.2 213 50.7
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 9.5e-37 158.7 157 56.7
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 6.2e-36 156.0 316 36.1
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 1.3e-33 148.3 158 51.3
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 3.2e-32 143.7 266 38.3
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.0e-30 138.7 280 37.9
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 3.0e-30 137.1 264 37.5
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 5.1e-30 136.3 234 39.3
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 8.7e-30 135.6 253 38.3
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 1.1e-29 135.2 163 50.9
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 1.1e-29 135.2 232 40.1
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.9e-29 134.4 180 45.6
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 2.5e-29 134.0 153 47.7
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 3.3e-29 133.7 129 57.4
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 4.3e-29 133.3 163 49.7
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.3e-29 133.3 113 57.5
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 5.6e-29 132.9 196 45.4
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 5.6e-29 132.9 289 38.1
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 7.3e-29 132.5 113 57.5
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.6e-28 131.3 113 57.5
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 3.6e-28 130.2 121 57.0
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 4.8e-28 129.8 187 44.4
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 6.2e-28 129.4 133 52.6
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 6.2e-28 129.4 120 57.5
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 6.2e-28 129.4 138 52.9
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 8.1e-28 129.0 163 49.1
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 1.1e-27 128.6 144 51.4
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 1.8e-27 127.9 141 53.2
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 2.4e-27 127.5 177 46.9
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 2.4e-27 127.5 235 38.3
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 2.4e-27 127.5 300 35.7
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 3.1e-27 127.1 111 58.6
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 3.1e-27 127.1 133 51.9
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 3.1e-27 127.1 154 52.6
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 3.1e-27 127.1 257 42.0
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 4.0e-27 126.7 192 43.8
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 4.0e-27 126.7 192 43.8
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 5.3e-27 126.3 238 39.1
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 6.9e-27 125.9 140 52.1
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 2.6e-26 124.0 155 47.1
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 2.6e-26 124.0 109 57.8
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 3.4e-26 123.6 121 55.4
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 3.4e-26 123.6 125 55.2
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 3.4e-26 123.6 268 40.3
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 4.4e-26 123.2 111 56.8
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 5.8e-26 122.9 190 41.6
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 1.3e-25 121.7 243 40.3
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 1.3e-25 121.7 111 56.8
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 1.7e-25 121.3 173 47.4
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 2.2e-25 120.9 140 50.7
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 2.9e-25 120.6 118 55.9
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 4.9e-25 119.8 112 57.1
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 1.1e-24 118.6 155 45.8
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 4.2e-24 116.7 114 52.6
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 7.1e-24 115.9 111 52.3
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 6.0e-23 112.8 159 45.9
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 1.7e-22 111.3 159 44.0
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 2.3e-22 110.9 136 45.6
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 5.1e-22 109.8 157 41.4
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 6.6e-22 109.4 123 49.6
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 1.1e-21 108.6 74 70.3
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 1.5e-21 108.2 111 47.7
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 1.5e-21 108.2 134 43.3
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 1.9e-21 107.8 178 40.4
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 2.5e-21 107.5 61 78.7
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 2.5e-21 107.5 157 40.8
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 7.3e-21 105.9 75 69.3
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 7.3e-21 105.9 117 49.6
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 9.6e-21 105.5 117 51.3
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 9.6e-21 105.5 223 36.3
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 9.6e-21 105.5 221 40.3
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 1.6e-20 104.8 89 57.3
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.6e-20 104.8 95 52.6
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 2.8e-20 104.0 220 36.8
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 2.8e-20 104.0 91 57.1
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 2.8e-20 104.0 91 57.1
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.6e-20 103.6 241 35.7
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 4.8e-20 103.2 209 37.8
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 6.2e-20 102.8 117 49.6
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 6.2e-20 102.8 90 58.9
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 6.2e-20 102.8 114 49.1
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.4e-19 100.9 239 35.1
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 4.0e-19 100.1 72 65.3
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 4.0e-19 100.1 241 34.9
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 4.0e-19 100.1 107 53.3
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.5e-18 98.2 110 51.8
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.5e-18 98.2 110 51.8
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.6e-18 97.4 112 50.0
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 3.4e-18 97.1 84 58.3
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 4.5e-18 96.7 147 42.2
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 7.6e-18 95.9 203 36.9
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 9.9e-18 95.5 113 47.8
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 3.8e-17 93.6 140 43.6
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 4.9e-17 93.2 236 36.0
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 8.4e-17 92.4 67 67.2
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 8.4e-17 92.4 115 46.1
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 8.4e-17 92.4 77 55.8
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 8.4e-17 92.4 74 58.1
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 2.4e-16 90.9 111 45.9
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 2.4e-16 90.9 118 42.4
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.2e-16 90.5 149 41.6
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.2e-16 90.5 178 36.5
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 5.4e-16 89.7 149 40.9
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 7.1e-16 89.4 223 35.9
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 7.1e-16 89.4 73 58.9
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 7.1e-16 89.4 142 40.8
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 7.1e-16 89.4 74 56.8
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 9.3e-16 89.0 135 43.7
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.6e-15 88.2 113 45.1
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 3.5e-15 87.0 115 45.2
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 4.6e-15 86.7 113 44.2
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 1.0e-14 85.5 149 40.9
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 1.0e-14 85.5 110 47.3
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 1.3e-14 85.1 72 54.2
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.8e-14 84.7 112 46.4
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 2.3e-14 84.3 59 66.1
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 6.7e-14 82.8 110 46.4
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 8.7e-14 82.4 95 48.4
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 8.7e-14 82.4 95 48.4
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 8.7e-14 82.4 109 41.3
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 7.4e-13 79.3 92 47.8
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 1.6e-12 78.2 122 41.0
Sp1g19610 Schrenkiella parvula HOM05D004520 ORTHO05D005520 2.1e-12 77.8 95 49.5
Atru.chr3.816 Acer truncatum HOM05D004520 ORTHO05D005520 2.8e-12 77.4 107 45.8
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 3.7e-12 77.0 95 47.4
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 5.3e-11 73.2 111 42.3
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 6.9e-11 72.8 70 60.0
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 6.9e-11 72.8 45 68.9
SEGI_20648 Sequoiadendron giganteum HOM05D004520 ORTHO05D005520 4.5e-10 70.1 53 62.3
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 3.8e-09 67.0 116 37.9
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 1.4e-08 65.1 95 41.1
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 1.4e-08 65.1 95 41.1
TAR381G0361 Trochodendron aralioides HOM05D004520 ORTHO05D005520 1.9e-08 64.7 61 54.1
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 2.5e-08 64.3 111 35.1
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 2.5e-08 64.3 171 33.9
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 3.2e-08 63.9 111 36.0
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 4.2e-08 63.5 135 38.5
THA.LOC104816921 Tarenaya hassleriana HOM05D004520 ORTHO05D005520 5.5e-08 63.2 42 69.0
Oeu061390.1 Olea europaea HOM05D004520 ORTHO05D005520 1.6e-07 61.6 45 60.0
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 2.1e-07 61.2 205 32.2
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 2.7e-07 60.8 68 45.6
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 2.7e-07 60.8 76 42.1
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 3.5e-07 60.5 109 40.4
PGSC0003DMG400046169 Solanum tuberosum HOM05D004520 ORTHO05D005520 7.9e-07 59.3 65 50.8
Cc01_g09000 Coffea canephora HOM05D004622 ORTHO05D005431 1.3e-06 58.5 203 30.0
Lsat_1_v5_gn_2_59400 Lactuca sativa HOM05D004622 ORTHO05D005431 2.3e-06 57.8 130 33.8
CiPaw.13G134900 Carya illinoinensis HOM05D004622 ORTHO05D005431 3.9e-06 57.0 156 31.4
ECA232G0105 Erigeron canadensis HOM05D004520 ORTHO05D005520 3.9e-06 57.0 74 43.2


User provided reference genes

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