Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 7.3e-311 1069.7 535 100.0
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 4.0e-277 957.6 534 89.3
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 9.7e-255 883.2 534 83.0
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 7.2e-250 867.1 534 80.9
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.2e-249 866.3 534 80.9
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 2.7e-241 838.6 553 77.2
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 6.5e-235 817.4 534 75.3
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 5.2e-232 807.7 533 76.5
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 9.7e-231 803.5 534 74.5
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 5.3e-229 797.7 533 75.2
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 1.6e-228 796.2 532 75.0
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 4.5e-228 794.7 533 74.5
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 1.5e-226 789.6 533 74.5
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 5.5e-226 787.7 533 73.4
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 2.7e-225 785.4 533 73.4
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 2.7e-225 785.4 532 73.3
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 4.7e-225 784.6 533 73.4
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 5.2e-224 781.2 533 73.5
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 1.7e-222 776.2 534 72.7
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 2.8e-222 775.4 535 73.5
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 2.4e-221 772.3 550 70.4
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 3.1e-221 771.9 531 73.1
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 3.1e-221 771.9 535 72.1
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 3.5e-220 768.5 533 71.9
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 7.2e-218 760.8 532 71.2
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 2.4e-213 745.7 532 69.9
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 3.1e-213 745.3 532 70.5
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 1.3e-211 740.0 534 70.0
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 2.3e-211 739.2 534 69.5
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 3.8e-211 738.4 536 69.2
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 6.6e-211 737.6 532 69.7
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 1.6e-209 733.0 533 68.5
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 1.6e-209 733.0 532 69.0
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 8.0e-209 730.7 534 68.4
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 1.2e-207 726.9 534 68.5
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 2.0e-207 726.1 536 68.3
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 3.4e-207 725.3 533 68.7
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 1.3e-206 723.4 530 68.3
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 6.4e-206 721.1 533 68.1
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 1.1e-205 720.3 543 68.5
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 1.8e-205 719.5 534 67.8
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 1.6e-204 716.5 548 66.2
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 1.3e-203 713.4 530 67.4
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 2.3e-203 712.6 531 67.0
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 5.6e-202 708.0 530 67.2
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 1.2e-201 706.8 531 66.9
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 2.8e-201 705.7 532 66.0
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 1.2e-199 700.3 534 65.5
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 1.2e-199 700.3 534 65.7
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 1.5e-199 699.9 530 65.7
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 9.8e-199 697.2 530 65.1
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 2.2e-198 696.0 530 65.5
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 2.9e-198 695.7 534 64.8
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 1.4e-197 693.3 579 62.2
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 2.4e-197 692.6 532 64.1
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 2.4e-197 692.6 534 64.2
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 3.2e-197 692.2 451 74.1
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 3.2e-197 692.2 533 67.4
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 3.2e-197 692.2 533 64.0
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 2.0e-196 689.5 532 64.3
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 4.6e-196 688.3 533 64.4
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 6.6e-195 684.5 533 65.3
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 6.6e-195 684.5 592 60.1
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 5.6e-194 681.4 533 63.4
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 2.8e-193 679.1 533 64.2
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 6.8e-192 674.5 533 63.6
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 2.4e-189 666.0 533 63.0
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 3.2e-189 665.6 531 62.3
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 1.3e-187 660.2 533 62.3
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 8.6e-187 657.5 450 72.0
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 5.2e-184 648.3 584 58.7
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 5.8e-183 644.8 546 60.8
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 2.2e-182 642.9 502 62.9
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 1.1e-181 640.6 533 60.6
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 1.9e-181 639.8 557 60.1
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 1.6e-180 636.7 499 65.3
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 7.8e-180 634.4 533 60.6
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 8.6e-179 630.9 439 73.1
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 4.3e-178 628.6 548 58.6
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 7.6e-175 617.8 535 60.7
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 1.6e-172 610.1 534 59.0
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 8.7e-171 604.4 534 58.4
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 2.5e-170 602.8 534 58.4
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 4.3e-170 602.1 533 59.5
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 6.4e-166 588.2 533 58.3
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 1.1e-165 587.4 533 57.2
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 7.4e-162 574.7 534 56.6
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 7.4e-162 574.7 533 56.7
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 9.3e-157 557.8 533 55.9
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 1.9e-149 533.5 407 63.9
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 5.1e-147 525.4 395 63.8
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 6.7e-147 525.0 395 64.3
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 6.3e-145 518.5 571 51.7
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 6.3e-137 491.9 544 50.0
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 1.7e-134 483.8 531 47.6
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 1.8e-131 473.8 545 48.4
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 3.3e-130 469.5 345 66.4
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 1.3e-129 467.6 345 66.1
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 1.0e-123 448.0 499 49.3
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 9.4e-117 424.9 290 73.1
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 1.8e-107 394.0 292 67.1
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 8.3e-105 385.2 461 45.6
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.1e-101 374.8 556 39.7
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 2.1e-92 344.0 559 38.3
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 7.0e-88 328.9 207 81.2
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 5.0e-86 322.8 286 60.1
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 1.4e-80 304.7 391 44.8
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.7e-73 281.2 212 65.6
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 1.7e-70 271.2 583 31.9
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 4.0e-67 260.0 561 32.4
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 1.6e-63 248.1 531 32.8
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 2.4e-56 224.2 151 71.5
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 7.3e-53 212.6 160 63.8
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 1.1e-51 208.8 168 61.9
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 6.7e-46 189.5 137 70.8
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 8.7e-46 189.1 132 72.7
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 1.6e-44 184.9 141 64.5
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 6.2e-36 156.4 123 61.8
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 4.2e-32 143.7 115 66.1
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 2.5e-29 134.4 87 78.2
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 4.8e-28 130.2 100 66.0
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 1.4e-27 128.6 101 68.3
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 6.5e-25 119.8 511 26.2
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 3.0e-22 110.9 149 41.6
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 2.3e-14 84.7 83 55.4
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 3.9e-14 84.0 67 62.7
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 8.8e-14 82.8 71 60.6
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 3.3e-13 80.9 115 47.0
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 1.7e-12 78.6 114 43.0
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 1.7e-12 78.6 71 57.7
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 1.7e-12 78.6 71 57.7
Cpa.g.c47759 Carica papaya HOM05D005625 ORTHO05D007564 2.4e-11 74.7 49 73.5
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 5.9e-10 70.1 303 26.7
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 2.2e-09 68.2 89 43.8
Lsat_1_v5_gn_3_107600 Lactuca sativa HOM05D000629 ORTHO05D013393 5.5e-08 63.5 68 42.6


User provided reference genes

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