Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 3.7e-121 438.3 240 100.0
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 1.8e-107 392.9 240 89.2
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 2.3e-91 339.3 217 84.8
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 3.2e-80 302.4 217 74.2
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 9.8e-74 280.8 221 70.1
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 6.8e-67 258.1 210 64.3
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 1.7e-65 253.4 211 66.4
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 2.4e-64 249.6 211 64.9
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 4.1e-64 248.8 211 64.0
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 7.1e-64 248.1 211 64.5
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 2.7e-63 246.1 211 64.5
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 4.6e-63 245.4 211 64.5
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 4.6e-63 245.4 211 64.0
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 2.3e-62 243.0 211 64.0
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 8.6e-62 241.1 216 62.0
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 1.9e-61 240.0 211 63.0
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 1.9e-61 240.0 211 62.1
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 4.3e-61 238.8 211 63.5
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 5.6e-61 238.4 212 63.2
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 5.6e-61 238.4 211 63.0
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 5.6e-61 238.4 219 58.0
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 9.6e-61 237.7 211 62.6
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 1.2e-60 237.3 219 57.5
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 1.2e-60 237.3 209 62.7
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 1.6e-60 236.9 212 62.7
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 4.7e-60 235.3 208 62.5
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 8.1e-60 234.6 219 57.1
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 6.9e-59 231.5 212 60.4
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 8.9e-59 231.1 212 61.8
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 2.6e-58 229.6 217 60.4
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 7.6e-58 228.0 220 56.8
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 3.8e-57 225.7 210 60.0
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 4.9e-57 225.3 212 57.5
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 8.4e-57 224.6 210 58.1
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 8.4e-57 224.6 211 61.6
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 8.4e-57 224.6 220 54.5
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 1.4e-56 223.8 213 59.6
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 1.2e-55 220.7 209 58.4
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 2.1e-55 219.9 213 59.2
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 4.6e-55 218.8 216 55.6
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 6.0e-55 218.4 210 55.2
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 7.8e-55 218.0 208 56.2
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 1.7e-54 216.9 212 58.0
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 2.3e-54 216.5 213 59.2
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 3.0e-54 216.1 216 55.1
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 3.9e-54 215.7 213 59.2
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 5.1e-54 215.3 218 54.6
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 4.3e-53 212.2 214 55.1
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 1.6e-52 210.3 219 53.9
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 4.8e-52 208.8 228 52.2
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 6.2e-52 208.4 211 53.6
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 1.1e-51 207.6 212 57.1
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 3.1e-51 206.1 202 55.9
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 1.5e-50 203.8 213 52.1
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 5.8e-50 201.8 217 52.5
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 7.6e-50 201.4 210 53.3
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 2.9e-49 199.5 210 53.8
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 4.9e-49 198.7 176 59.7
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 4.9e-49 198.7 211 50.2
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 2.4e-48 196.4 209 55.0
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 7.1e-48 194.9 196 53.6
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 7.1e-48 194.9 211 49.3
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 3.5e-47 192.6 208 49.5
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 4.6e-47 192.2 215 52.1
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 1.3e-46 190.7 202 54.0
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 1.8e-46 190.3 208 50.5
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 1.8e-46 190.3 210 49.0
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 3.0e-46 189.5 208 50.0
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 3.9e-46 189.1 215 49.8
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 1.1e-45 187.6 220 52.3
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 4.3e-45 185.7 210 53.8
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 3.7e-44 182.6 197 50.8
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 1.4e-43 180.6 214 47.2
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 1.4e-43 180.6 180 56.7
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 1.8e-43 180.3 213 47.9
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 1.8e-43 180.3 214 45.3
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 4.0e-43 179.1 212 48.1
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 6.9e-43 178.3 205 47.8
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 1.2e-42 177.6 212 50.0
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 2.0e-42 176.8 214 47.7
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 2.0e-42 176.8 214 47.2
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 3.4e-42 176.0 212 47.2
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 3.4e-42 176.0 211 48.3
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 3.4e-42 176.0 208 50.5
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 7.6e-42 174.9 229 43.7
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 9.9e-42 174.5 208 45.7
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 1.3e-41 174.1 216 50.9
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 1.3e-41 174.1 207 51.2
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 1.7e-41 173.7 212 47.2
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 2.2e-41 173.3 212 45.8
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 2.2e-41 173.3 211 47.9
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 4.9e-41 172.2 214 45.3
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 1.9e-40 170.2 213 48.8
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 2.4e-40 169.9 213 45.5
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 2.4e-40 169.9 205 46.3
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 1.6e-39 167.2 210 46.2
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 7.9e-39 164.9 213 47.4
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 7.9e-39 164.9 210 47.6
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 1.8e-38 163.7 163 55.2
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 1.8e-38 163.7 210 47.6
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 5.1e-38 162.2 210 47.1
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 8.7e-38 161.4 210 46.2
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 3.3e-37 159.5 219 44.3
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 4.3e-37 159.1 213 43.7
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 4.3e-37 159.1 211 46.0
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 8.2e-36 154.8 207 41.5
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 1.8e-35 153.7 201 47.3
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 4.0e-35 152.5 219 41.6
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 6.9e-35 151.8 199 44.2
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 3.4e-34 149.4 210 43.3
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 4.5e-34 149.1 210 44.8
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 5.8e-34 148.7 215 41.4
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 5.8e-34 148.7 215 38.6
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 7.6e-34 148.3 222 44.1
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 1.0e-33 147.9 218 39.0
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 3.8e-33 146.0 214 41.1
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 8.4e-33 144.8 211 45.5
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 1.1e-32 144.4 212 40.6
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.4e-32 144.1 214 39.7
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 2.1e-31 140.2 140 57.1
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 1.0e-30 137.9 208 40.9
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 1.0e-30 137.9 199 44.2
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 1.3e-30 137.5 217 41.9
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 2.3e-30 136.7 198 40.4
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 3.0e-30 136.3 198 40.4
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 8.7e-30 134.8 216 40.7
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 1.1e-29 134.4 142 54.2
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 4.3e-29 132.5 216 39.8
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 9.7e-29 131.3 217 36.9
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 2.8e-28 129.8 198 40.4
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 8.2e-28 128.3 198 39.9
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 8.2e-28 128.3 200 38.5
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 8.2e-28 128.3 197 40.1
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 8.2e-28 128.3 139 54.0
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 1.8e-27 127.1 198 39.4
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 1.8e-27 127.1 198 39.4
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 1.8e-27 127.1 216 37.5
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 2.4e-27 126.7 208 38.5
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 4.5e-26 122.5 215 39.5
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 1.0e-25 121.3 115 55.7
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 1.3e-25 120.9 192 39.1
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 1.3e-25 120.9 139 48.2
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 5.0e-25 119.0 212 38.2
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 6.5e-25 118.6 195 39.0
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 8.5e-25 118.2 205 37.6
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 2.5e-24 116.7 208 40.4
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 3.2e-24 116.3 214 36.9
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 9.3e-24 114.8 138 47.1
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 8.7e-22 108.2 214 34.6
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 2.2e-20 103.6 139 44.6
EL10Ac2g03122 Beta vulgaris HOM05D004648 ORTHO05D005782 1.4e-14 84.3 118 41.5
CSS0037477 Camellia sinensis var. sinensis HOM05D000739 ORTHO05D109703 3.8e-09 66.2 108 44.4
Phvul.008G182701 Phaseolus vulgaris HOM05D004648 ORTHO05D307582 1.0e-06 58.2 90 41.1


User provided reference genes

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