Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 6426.3 3233 100.0
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 5296.1 3255 83.5
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 4961.4 3252 79.0
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 4874.7 3253 77.6
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 4873.9 3253 77.7
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 4868.1 3253 77.4
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 4838.9 3253 77.2
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 4837.7 3254 77.1
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 4351.2 3253 70.3
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 4329.6 3251 69.9
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 4233.3 3281 67.6
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 4108.5 3258 66.5
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 4107.0 3247 66.7
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 4036.9 3261 65.4
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 4030.3 3273 65.3
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 4021.9 3273 64.6
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 4017.2 3260 65.3
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 4005.7 3269 64.6
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 4004.1 3267 64.4
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 4002.6 3250 65.0
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3992.2 3270 64.0
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 3985.3 3282 64.7
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3962.5 3272 63.9
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3954.8 3273 63.8
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 3951.4 3318 63.1
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 3937.1 3251 63.8
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 3935.6 3274 63.3
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3927.1 3268 63.4
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 3927.1 3266 63.4
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3912.5 3268 63.3
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 3856.6 3248 62.7
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 3816.9 3270 61.9
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 3799.6 3264 62.3
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 3767.2 3248 62.9
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3754.5 2889 67.7
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 3729.9 3257 60.5
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 3727.9 3375 60.0
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 3719.1 3299 60.3
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 3713.3 3254 60.3
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 3663.2 3252 59.7
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 3662.8 3259 60.1
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3659.8 3262 60.8
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 3635.1 3261 59.4
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3518.8 3295 57.9
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 3511.5 3310 57.8
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3505.7 3297 57.8
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 3498.0 3273 58.1
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 3470.2 3263 58.3
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 3466.4 3260 57.8
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 3459.1 3253 58.2
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 3444.8 3025 60.7
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 3444.1 3270 57.7
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 3442.5 3269 58.0
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3435.6 3282 57.9
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3428.6 3255 57.5
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 3422.9 3255 57.4
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 3418.2 3319 56.8
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3414.0 3257 57.4
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 3413.6 3258 57.3
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 3399.0 3271 57.7
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 3390.5 3256 57.0
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 3385.5 3247 56.9
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 3377.8 3259 57.2
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 3361.2 3276 56.3
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 3339.3 3265 56.8
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 3328.9 3139 57.0
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 3303.8 3299 55.7
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3285.7 3278 55.2
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 3244.5 3243 55.4
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 3237.6 3287 54.4
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 3156.7 3248 54.8
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 3087.4 2708 60.8
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 3024.2 2438 64.7
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 2991.8 3114 54.2
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2987.6 2019 75.9
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 2909.0 3023 53.7
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2689.1 3257 47.9
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2678.7 3145 49.6
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2482.2 2469 54.3
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2370.9 1600 76.6
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2281.5 2568 50.8
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2215.3 2015 58.9
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 2205.3 1690 67.5
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 2134.4 3549 38.9
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 2074.3 2424 49.0
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2031.5 1511 70.0
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 2028.8 2450 48.0
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 2008.8 1797 60.9
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 1996.1 1468 70.2
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1989.9 2823 42.7
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1958.3 1447 71.9
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1910.6 3292 38.1
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1881.3 3296 37.3
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1845.1 3525 36.2
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1625.1 1004 82.9
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1521.1 1244 63.0
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1482.6 2184 42.2
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1385.9 1753 45.8
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1383.2 969 72.7
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 1352.4 1490 52.1
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 0.0e+00 1296.2 1537 48.4
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1254.6 1007 65.6
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1239.9 1553 47.6
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1195.6 843 72.1
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 1166.4 1503 45.2
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1134.0 848 69.8
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 1086.6 1137 55.8
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 5.0e-306 1056.2 973 59.4
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 1.6e-299 1034.6 852 62.9
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 2.2e-293 1014.2 3367 27.5
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 7.3e-281 972.6 889 57.8
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 2.3e-274 951.0 755 64.2
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 3.2e-252 877.5 1306 42.9
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 1.8e-231 808.5 799 56.1
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 1.6e-203 715.7 412 88.1
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 8.9e-202 709.9 441 81.2
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 6.0e-190 670.6 802 48.3
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 2.7e-182 645.2 946 42.6
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 8.9e-178 630.2 872 43.8
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 1.3e-155 556.6 821 44.0
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 1.9e-148 532.7 409 67.7
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 1.3e-144 520.0 657 45.1
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 7.9e-134 484.2 806 38.1
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 2.4e-130 472.6 327 71.6
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 6.9e-130 471.1 450 54.0
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 8.5e-128 464.2 601 47.1
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 8.2e-123 447.6 270 81.1
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 3.4e-121 442.2 250 86.8
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 2.9e-120 439.1 578 47.2
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 1.4e-117 430.3 827 34.9
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 1.9e-111 409.8 342 63.5
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 1.2e-110 407.1 905 34.3
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 4.8e-107 395.2 301 67.4
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 8.5e-104 384.4 414 51.7
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 2.7e-97 362.8 217 85.7
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 4.8e-91 342.0 244 67.6
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 1.8e-90 340.1 651 35.2
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 5.4e-90 338.6 542 38.9
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 2.9e-88 332.8 245 63.3
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 1.4e-85 323.9 309 57.3
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 3.0e-85 322.8 358 50.6
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 5.7e-84 318.5 828 31.8
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 6.0e-73 282.0 326 49.4
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 3.9e-72 279.3 304 51.6
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 1.2e-70 274.2 954 26.9
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 8.9e-69 268.1 809 27.9
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 8.6e-64 251.5 155 79.4
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 8.9e-61 241.5 328 44.5
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 1.2e-57 231.1 707 28.0
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 2.7e-49 203.4 392 35.5
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 1.3e-48 201.1 725 26.3
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 8.7e-48 198.4 194 53.1
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 4.5e-36 159.5 118 69.5
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 4.8e-30 139.4 82 82.9
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 9.0e-29 135.2 97 72.2
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 2.0e-28 134.0 120 59.2
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 2.2e-27 130.6 116 63.8
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 4.9e-27 129.4 130 60.0
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 2.5e-26 127.1 111 54.1
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 2.1e-25 124.0 109 65.1
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 2.3e-24 120.6 86 69.8
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 4.3e-23 116.3 109 58.7
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 1.4e-21 111.3 70 78.6
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 1.7e-19 104.4 93 53.8
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 5.9e-12 79.3 128 34.4
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 1.3e-11 78.2 60 60.0
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 2.7e-09 70.5 45 77.8
Lsat_1_v5_gn_3_124661 Lactuca sativa HOM05D004165 ORTHO05D232501 4.6e-09 69.7 59 57.6
Lsat_1_v5_gn_5_173760 Lactuca sativa HOM05D000298 ORTHO05D233122 1.4e-08 68.2 80 50.0
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 4.3e-07 63.2 59 59.3
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 5.7e-07 62.8 53 52.8
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 3.7e-06 60.1 48 54.2


User provided reference genes

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