Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 6.9e-177 624.4 457 100.0
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 4.1e-137 492.3 456 75.4
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 3.2e-121 439.5 461 68.1
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 4.6e-120 435.6 461 67.0
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 3.0e-119 433.0 243 90.5
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.8e-116 423.7 471 66.0
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.0e-112 410.2 464 65.5
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 6.8e-108 395.2 247 80.6
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 2.0e-107 393.7 242 81.0
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 9.9e-107 391.3 249 79.5
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 1.7e-106 390.6 247 78.5
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 6.4e-106 388.7 247 78.1
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 8.3e-106 388.3 248 80.2
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 1.1e-105 387.9 246 78.5
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 1.9e-105 387.1 246 78.0
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 1.9e-105 387.1 246 78.5
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 2.4e-105 386.7 243 81.5
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.4e-105 386.7 242 80.2
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 3.2e-105 386.3 456 58.3
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 4.1e-105 386.0 246 78.0
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 4.1e-105 386.0 242 80.2
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 7.1e-105 385.2 246 78.0
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 9.2e-105 384.8 481 62.2
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 1.6e-104 384.0 243 81.1
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 2.1e-104 383.6 249 80.3
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 3.5e-104 382.9 251 78.1
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 4.6e-104 382.5 246 77.2
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 4.6e-104 382.5 246 77.2
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 4.6e-104 382.5 468 57.9
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 6.0e-104 382.1 242 79.8
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 7.8e-104 381.7 246 77.2
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.0e-103 381.3 242 79.8
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 1.0e-103 381.3 240 80.0
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 2.3e-103 380.2 242 80.2
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 2.3e-103 380.2 242 79.8
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 3.0e-103 379.8 467 65.5
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 3.0e-103 379.8 247 76.5
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 3.9e-103 379.4 246 76.4
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 3.9e-103 379.4 246 76.4
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 3.9e-103 379.4 246 76.4
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 5.1e-103 379.0 242 78.9
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 8.6e-103 378.3 242 78.9
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 1.1e-102 377.9 242 78.9
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 1.9e-102 377.1 251 76.9
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 3.3e-102 376.3 246 77.6
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 7.3e-102 375.2 246 76.4
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 1.6e-101 374.0 238 80.7
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 2.8e-101 373.2 479 54.7
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 2.8e-101 373.2 469 60.3
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 4.0e-100 369.4 461 55.5
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 4.0e-100 369.4 246 75.6
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 4.0e-100 369.4 462 53.5
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 4.0e-100 369.4 246 76.0
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 5.2e-100 369.0 452 52.7
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 8.9e-100 368.2 247 74.5
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 1.2e-99 367.9 246 77.2
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 1.5e-99 367.5 247 74.1
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 2.0e-99 367.1 465 51.4
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 2.6e-99 366.7 247 74.1
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 3.4e-99 366.3 459 52.5
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 4.4e-99 365.9 248 77.0
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 5.8e-99 365.5 247 73.7
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 5.8e-99 365.5 247 73.7
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 2.2e-98 363.6 462 55.6
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 2.4e-97 360.1 249 75.1
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 3.2e-97 359.8 245 76.3
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 3.2e-97 359.8 247 74.1
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 5.4e-97 359.0 245 75.5
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 7.1e-97 358.6 252 72.6
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 1.6e-96 357.5 243 74.9
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 2.1e-96 357.1 242 74.4
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 2.7e-96 356.7 239 74.9
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 2.7e-96 356.7 239 74.9
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 6.0e-96 355.5 247 73.3
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 5.1e-95 352.4 245 75.5
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 6.6e-95 352.1 245 74.3
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 8.7e-95 351.7 245 73.1
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 1.1e-94 351.3 241 72.6
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 1.5e-94 350.9 239 75.3
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 1.9e-94 350.5 251 69.7
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 7.3e-94 348.6 247 71.7
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 1.2e-93 347.8 252 68.7
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 1.6e-93 347.4 247 71.3
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 3.6e-93 346.3 251 72.1
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 3.1e-92 343.2 248 70.2
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 9.0e-92 341.7 241 71.8
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 2.0e-91 340.5 243 72.0
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 3.4e-91 339.7 247 72.1
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 4.4e-91 339.3 244 73.8
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 4.4e-91 339.3 237 71.7
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 7.6e-91 338.6 245 71.0
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 6.4e-90 335.5 246 69.5
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 8.4e-90 335.1 247 69.2
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 7.1e-89 332.0 253 67.6
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 9.3e-89 331.6 241 69.7
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 2.1e-88 330.5 247 68.0
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 6.0e-88 328.9 241 69.7
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 1.7e-87 327.4 247 68.8
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 3.0e-87 326.6 247 68.4
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 3.9e-87 326.2 240 69.6
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 5.1e-87 325.9 246 68.3
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 8.7e-87 325.1 246 67.9
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.1e-86 324.7 246 68.3
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 2.5e-86 323.6 253 66.4
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 7.3e-86 322.0 229 69.0
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 1.3e-85 321.2 247 66.4
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 1.6e-85 320.9 244 66.8
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 2.8e-85 320.1 247 68.0
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 2.2e-82 310.5 231 68.0
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 3.8e-82 309.7 221 71.5
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 3.2e-81 306.6 466 57.3
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 7.1e-81 305.4 246 62.2
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 1.1e-78 298.1 227 66.1
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 1.3e-77 294.7 211 72.0
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 8.1e-77 292.0 247 61.5
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 7.6e-75 285.4 236 65.3
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 1.9e-73 280.8 223 61.0
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 2.2e-66 257.3 240 56.2
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 1.1e-65 255.0 293 72.7
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 2.1e-56 224.2 243 49.8
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 6.5e-50 202.6 241 46.5
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 2.7e-48 197.2 246 46.7
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 8.8e-47 192.2 250 40.0
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 1.4e-44 184.9 110 80.0
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 4.5e-43 179.9 229 41.5
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 1.0e-42 178.7 246 41.1
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 7.4e-38 162.5 237 42.6
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 7.4e-38 162.5 87 85.1
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 4.8e-37 159.8 246 38.2
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 2.2e-34 151.0 215 38.6
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 7.2e-33 146.0 219 37.0
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 2.1e-32 144.4 225 40.9
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 3.0e-31 140.6 131 52.7
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 2.8e-29 134.0 230 31.7
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 5.0e-26 123.2 225 31.6
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 1.5e-25 121.7 218 37.6
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 2.5e-25 120.9 146 44.5
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 7.2e-25 119.4 234 30.3
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 2.5e-17 94.4 67 65.7
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 4.0e-15 87.0 131 40.5
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 2.6e-14 84.3 126 41.3
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 4.4e-14 83.6 209 31.6
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 1.3e-13 82.0 103 47.6
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 2.2e-13 81.3 103 44.7
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 3.7e-13 80.5 108 45.4
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 4.9e-13 80.1 177 34.5
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 1.7e-10 71.6 62 58.1
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 3.8e-10 70.5 48 56.2
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 1.5e-09 68.6 57 52.6
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 1.5e-09 68.6 54 48.1
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 1.6e-08 65.1 134 32.8
MCO08G346 Micromonas commoda HOM05D004657 ORTHO05D005562 9.8e-06 55.8 126 27.8


User provided reference genes

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