Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 0.0e+00 1181.0 610 100.0
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 4.0e-305 1050.8 610 89.0
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 2.5e-283 978.4 616 84.1
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.0e-240 835.9 613 71.6
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 1.0e-236 823.5 616 71.4
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 3.0e-236 822.0 616 71.4
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 5.7e-235 817.8 619 70.3
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 1.4e-230 803.1 582 74.2
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 7.2e-222 774.2 625 67.4
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 4.8e-218 761.5 578 69.4
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 7.7e-216 754.2 618 65.2
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 1.0e-212 743.8 616 64.0
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 2.6e-211 739.2 624 65.7
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 2.8e-210 735.7 618 64.4
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 1.2e-205 720.3 614 62.7
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 2.1e-205 719.5 614 62.4
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 5.2e-204 714.9 615 61.6
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 2.6e-203 712.6 614 62.2
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.1e-201 707.2 622 63.5
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 5.6e-198 694.9 623 61.0
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 8.0e-197 691.0 684 56.7
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 1.5e-195 686.8 622 61.3
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.1e-193 680.6 620 60.6
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 5.4e-193 678.3 569 63.6
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 8.6e-191 671.0 615 62.1
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.1e-188 664.1 650 57.7
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 3.2e-185 652.5 618 60.0
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 7.1e-185 651.4 619 59.1
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 2.1e-181 639.8 614 58.6
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 2.6e-179 632.9 622 58.2
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 6.4e-178 628.2 624 57.1
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 1.4e-177 627.1 626 56.4
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 2.3e-175 619.8 479 67.2
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 2.3e-175 619.8 617 56.1
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 3.9e-175 619.0 513 64.5
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 7.3e-174 614.8 637 58.6
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 2.1e-173 613.2 621 55.9
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 6.2e-173 611.7 627 56.0
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 8.1e-173 611.3 621 55.4
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 1.4e-172 610.5 627 56.3
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 8.9e-172 607.8 624 55.8
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 5.8e-171 605.1 626 54.0
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 4.9e-170 602.1 625 57.0
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 2.4e-169 599.7 716 49.4
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 7.1e-169 598.2 639 54.8
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 4.6e-168 595.5 628 53.5
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 4.6e-168 595.5 716 49.6
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 3.9e-167 592.4 627 55.2
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 3.6e-165 585.9 682 50.6
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 3.6e-165 585.9 682 50.6
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.1e-164 584.3 566 57.4
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 9.0e-164 581.3 612 53.8
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 2.6e-163 579.7 618 53.7
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 6.4e-162 575.1 637 54.0
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 2.4e-161 573.2 619 54.1
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 7.1e-161 571.6 630 53.3
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 9.3e-161 571.2 651 52.4
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 1.0e-159 567.8 587 55.4
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 1.0e-159 567.8 634 53.3
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 3.0e-159 566.2 625 53.1
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 1.5e-158 563.9 625 53.0
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 9.6e-158 561.2 621 54.6
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 9.6e-158 561.2 649 52.1
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 6.9e-156 555.1 626 52.9
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 5.8e-155 552.0 629 53.3
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 1.7e-154 550.4 627 52.5
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 4.9e-154 548.9 675 49.6
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 1.6e-152 543.9 639 52.3
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 1.0e-151 541.2 620 50.2
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 3.9e-151 539.3 629 51.7
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 1.1e-150 537.7 623 52.2
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 2.5e-150 536.6 629 51.5
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 3.3e-150 536.2 605 51.4
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 1.1e-148 531.2 630 51.6
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 9.0e-148 528.1 657 51.0
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 4.9e-146 522.3 614 51.5
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 1.9e-145 520.4 630 50.2
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 4.6e-144 515.8 639 49.9
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 3.0e-143 513.1 617 50.4
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 2.5e-142 510.0 616 51.9
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 1.0e-138 498.0 626 48.9
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 1.0e-138 498.0 626 48.9
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 1.7e-138 497.3 638 50.5
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 1.1e-137 494.6 614 49.7
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 1.9e-137 493.8 609 51.4
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 2.5e-137 493.4 619 50.4
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 3.2e-137 493.0 618 51.6
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 1.6e-136 490.7 624 48.4
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 3.5e-136 489.6 645 49.0
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 1.8e-135 487.3 622 50.3
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 8.7e-135 485.0 621 48.6
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 2.4e-132 476.9 632 47.9
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 2.4e-132 476.9 632 48.1
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 2.9e-130 469.9 581 50.4
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 1.4e-121 441.0 414 57.7
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 3.9e-119 433.0 618 46.6
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 1.1e-118 431.4 458 52.8
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 2.6e-115 420.2 621 46.5
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 2.0e-107 394.0 653 43.3
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 2.2e-101 374.0 583 44.1
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 3.7e-101 373.2 414 51.0
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 1.8e-100 370.9 360 58.9
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 1.6e-80 304.7 701 34.8
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 3.6e-80 303.5 239 68.2
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 8.9e-79 298.9 307 54.7
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 1.5e-78 298.1 722 34.1
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 1.5e-70 271.6 462 41.8
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 2.6e-54 217.6 278 43.5
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 5.1e-50 203.4 285 44.6
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 8.1e-48 196.1 561 29.6
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 2.4e-47 194.5 285 46.3
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 8.1e-40 169.5 182 52.2
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 6.9e-39 166.4 154 59.1
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.2e-35 155.6 196 46.9
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 1.8e-34 151.8 662 26.9
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 1.1e-33 149.1 583 24.7
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 1.5e-33 148.7 111 66.7
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.1e-31 142.5 113 62.8
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 6.9e-31 139.8 170 48.2
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 1.2e-30 139.0 613 26.3
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 1.0e-29 136.0 509 28.5
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 1.3e-29 135.6 190 45.8
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 4.9e-29 133.7 143 58.0
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 1.9e-28 131.7 155 51.6
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.2e-27 129.0 129 54.3
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.9e-25 121.7 104 60.6
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 4.3e-25 120.6 134 50.0
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 7.6e-22 109.8 186 40.9
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 3.8e-21 107.5 75 66.7
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 4.2e-20 104.0 88 65.9
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 5.7e-17 93.6 170 42.9
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.6e-14 84.7 79 49.4
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 6.5e-13 80.1 69 56.5
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 1.1e-12 79.3 155 40.6
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 1.2e-11 75.9 84 52.4
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 2.3e-10 71.6 82 48.8
Solyc02g062815.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 6.9e-07 60.1 49 59.2


User provided reference genes

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